RLG00000015946

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005513
Physical Location & Seq
Reverse (-)
2676922 .. 2677462
541 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015946

Sequence Viewer

Length: 447 bp
ATGCTACTAGTACTACTCGTGCTAGCAGCAGCAGCTCTTGCTCGCAATGAAGGAGATGATCATGCAACGCCTCCGATTCAGTCTCCAAATCCACCATCGCCATCATCAGATGGTTCGGGTTCTGCTAAGCCGGAGGGTTTAATCGACGTAGGTCTATGCACCATTCAATGTGGTGCTAGGTGTTTTGGTCGTAAGGCATCCCTAATTTCATCACCTGATAAGCTTCACTTTCCCAAAATTCATTTGGGTATGGCTATTTGTTTTAGTAAATGCATGCTCGAGTGCACCATTAACAACGCGAATGTGAAGCCAGAACTCTATCATTGTACACTTGGATGTGCTTATAAGTCTGCTGCTAAAACAAAATTAACTGGTTCAGATGCTGATGTTGGGAACAACTATTTGGGTTCTTGCTACAACAAGTGCGAGAAGAACTATCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.61

Weight (kDa)

8.02

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 299
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 2 cut(s) 12, 328
AgsI TTSAA 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 2 cut(s) 35, 223
AluI AGCT 2 cut(s) 35, 223
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 278
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 26, 29, 32, 353
ApoI RAATTY 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 204
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 287
BauI CACGAG 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 38, 41, 44, 340
BccI CCATC 3 cut(s) 103, 104, 109
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 87
BcuI ACTAGT 1 cut(s) 7
BfaI CTAG 3 cut(s) 8, 23, 177
BisI GCNGC 4 cut(s) 27, 30, 33, 354
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 4 cut(s) 28, 31, 34, 355
BmcAI AGTACT 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 278
BmsI GCATC 2 cut(s) 206, 370
BmtI GCTAGC 1 cut(s) 26
BoxI GACNNNNGTC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 52
BseGI GGATG 2 cut(s) 197, 341
BseMI GCAATG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 4 cut(s) 38, 41, 44, 340
Bsh1236I CGCG 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 58
Bsp1720I GCTNAGC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 299
BspOI GCTAGC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 326
BsrI ACTGG 1 cut(s) 376
BssMI GATC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 24, 43, 275
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 197, 341
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 32, 38
BstNSI RCATGY 1 cut(s) 277
BstPAI GACNNNNGTC 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 4 cut(s) 38, 41, 44, 340
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 197, 341
Cac8I GCNNGC 3 cut(s) 24, 43, 275
CaiI CAGNNNCTG 1 cut(s) 383
Csp6I GTAC 2 cut(s) 11, 327
CviAII CATG 2 cut(s) 62, 274
CviJI RGCY 5 cut(s) 35, 130, 223, 254, 310
CviKI_1 RGCY 5 cut(s) 35, 130, 223, 254, 310
CviQI GTAC 2 cut(s) 11, 327
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 275
FaeI CATG 2 cut(s) 65, 277
FaiI YATR 5 cut(s) 63, 157, 251, 275, 345
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 61, 273
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 27, 30, 33, 354
FokI GGATG 2 cut(s) 184, 348
Fsp4HI GCNGC 4 cut(s) 27, 30, 33, 354
FspBI CTAG 3 cut(s) 8, 23, 177
GluI GCNGC 4 cut(s) 27, 30, 33, 354
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 65, 277
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 285, 329
Hpy188I TCNGA 3 cut(s) 75, 109, 379
Hpy8I GTNNAC 2 cut(s) 285, 329
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 65, 159, 273, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 38
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 65, 277
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 4 cut(s) 144, 228, 324, 357
Lsp1109I GCAGC 4 cut(s) 38, 41, 44, 340
LweI GCATC 2 cut(s) 206, 370
MaeI CTAG 3 cut(s) 8, 23, 177
MaeII ACGT 1 cut(s) 147
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 3 cut(s) 204, 237, 365
MnlI CCTC 2 cut(s) 81, 127
Mph1103I ATGCAT 1 cut(s) 275
MseI TTAA 3 cut(s) 140, 291, 368
MslI CAYNNNNRTG 1 cut(s) 334
MspI CCGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 32, 38
NdeII GATC 1 cut(s) 58
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 65, 277
NsiI ATGCAT 1 cut(s) 275
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 278
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 4 cut(s) 28, 31, 34, 355
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 383
RsaI GTAC 2 cut(s) 12, 328
RsaNI GTAC 2 cut(s) 11, 327
RseI CAYNNNNRTG 1 cut(s) 334
SaqAI TTAA 3 cut(s) 140, 291, 368
SatI GCNGC 4 cut(s) 27, 30, 33, 354
Sau3AI GATC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 12
SduI GDGCHC 1 cut(s) 287
SetI ASST 7 cut(s) 37, 150, 154, 182, 217, 225, 445
SfaNI GCATC 2 cut(s) 206, 370
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 7
SphI GCATGC 1 cut(s) 277
Sse9I AATT 3 cut(s) 204, 237, 365
SspMI CTAG 3 cut(s) 8, 23, 177
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 144, 279
TasI AATT 3 cut(s) 204, 237, 365
TatI WGTACW 2 cut(s) 10, 326
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 3 cut(s) 140, 291, 368
Tru9I TTAA 3 cut(s) 140, 291, 368
TseI GCWGC 4 cut(s) 26, 29, 32, 353
TspDTI ATGAA 3 cut(s) 63, 198, 230
VneI GTGCAC 1 cut(s) 283
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 3 cut(s) 8, 23, 177
ZrmI AGTACT 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.