Rh2BG037700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005513
Physical Location & Seq
Forward (+)
2622144 .. 2622356
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG037700.1

Sequence Viewer

Length: 213 bp
ATGGCATTCACAACAAACAGTAGGTTTTCCGTGTTCATGCTACTAGTACTACTCGGGCTAGCAGTAGCAGCTCTTGCTCATAATGAAGGTGATGATCATGCAACGCCGCCCATTCTGTCTCCAAATCATCCACTACCGTCATCATCAGAAGGTTCGGGTTCTGCTAAGCCGGGGCCCGGAGGGTTTAGTCGACGTAGGTCTATGTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.3

Weight (kDa)

8.06

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 190
AciI CCGC 1 cut(s) 107
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 43
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 173
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 173, 174
AsuC2I CCSGG 2 cut(s) 171, 177
AsuHPI GGTGA 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 80
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 171, 177
BcoDI GTCTC 1 cut(s) 123
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 59
BisI GCNGC 2 cut(s) 69, 107
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 2 cut(s) 70, 108
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 171, 177
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 173, 174
BmiI GGNNCC 2 cut(s) 174, 175
BmrFI CCNGG 2 cut(s) 171, 177
BmtI GCTAGC 1 cut(s) 62
BoxI GACNNNNGTC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 171, 177
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 175
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 170, 177
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 53
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 94
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 174, 175
BspOI GCTAGC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 20, 138
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 68, 74
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 169, 175
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 173, 174
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 37, 98
CviJI RGCY 4 cut(s) 58, 71, 169, 175
CviKI_1 RGCY 4 cut(s) 58, 71, 169, 175
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 2 cut(s) 40, 101
FaiI YATR 4 cut(s) 38, 81, 99, 203
FatI CATG 2 cut(s) 36, 97
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 69, 107
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 69, 107
FspBI CTAG 2 cut(s) 44, 59
GluI GCNGC 2 cut(s) 69, 107
HaeIII GGCC 1 cut(s) 175
HapII CCGG 2 cut(s) 170, 177
Hin1II CATG 2 cut(s) 40, 101
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HpaII CCGG 2 cut(s) 170, 177
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 80, 143
HpyCH4III ACNGT 2 cut(s) 20, 138
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 74
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 2 cut(s) 40, 101
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 183, 190
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 2 cut(s) 44, 59
MaeII ACGT 1 cut(s) 193
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 177
MnlI CCTC 1 cut(s) 173
MspI CCGG 2 cut(s) 170, 177
MspR9I CCNGG 2 cut(s) 171, 177
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 68, 74
NciI CCSGG 2 cut(s) 171, 177
NdeII GATC 1 cut(s) 94
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 2 cut(s) 40, 101
NlaIV GGNNCC 2 cut(s) 174, 175
PctI GAATGC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 70, 108
PshAI GACNNNNGTC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 174, 175
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 173, 174
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SalI GTCGAC 1 cut(s) 189
SatI GCNGC 2 cut(s) 69, 107
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 173, 174
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 171, 177
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 26, 73, 91, 154, 196, 200
SpeI ACTAGT 1 cut(s) 43
SsiI CCGC 1 cut(s) 107
SspMI CTAG 2 cut(s) 44, 59
StyD4I CCNGG 2 cut(s) 169, 175
TaaI ACNGT 2 cut(s) 20, 138
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 190
TatI WGTACW 1 cut(s) 46
TauI GCSGC 1 cut(s) 109
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 25, 99
TspGWI ACGGA 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 2 cut(s) 44, 59
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.