Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005513

Physical Location & Seq

Genomic Coordinates Reverse (-)

3092399 .. 3092967

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCATTCGCAACAAACAGTAGGTTATCCATGTTCATGCTACTAGTACTACACGTGCTAGCAGCAGCAGCTCTTGCTCATAATGAAGGTGATGATCATGTAACGCATTCGATTCAGTCTCCAAATCCACCATCGCCATCATCAGATGGTTCGGGTTCTGCTAAGCCGGAGGGTTTAATCGACGTAGGTCTATGTGCCATTCAATGTGGTGCTAGGTGTTTTGGTCGTAAGGCATCCCTAATTTCATCACCTGATAAGCTTCACTTTCCCAAAATTCATTTGGGTAGGGCTATTTGTTTTAGTAAATGTATGCTCGAGTGCACCATTAACAACGCGAATGTGAAGCCAGAACTCTATCATTGTACACTTGGATGTGCTTATAAGTCTGCTGCTAAAACAAAATTAACTGGTTCAGATGCTGATGTTGGGAACAACTATTTGGGTTCTTGCTACAACAAGTGCGAGAAGAACTATCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.02

Weight (kDa)

8.33

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03011 FvH4_1g03012
rosa_laevigata	RLG00000015946 RLG00000015949 RLG00000026127 RLG00000026132 RLG00000026133
rosa_multiflora	Rmu_co8406007.1_g000001 Rmu_sc0004235.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152720 Rroxscaffold_4G00277610 Rroxscaffold_4G00277620
rosa_rugosa	Rorug01G0438300 Rorug01G0483400
rosa_samantha	Rh1AG464000 Rh1AG464600 Rh1BG421200 Rh1BG421300 Rh1CG434700 Rh1CG435300 Rh1DG453800 Rh1DG453900 Rh2AG038200 Rh2BG037500 Rh2BG037700 Rh2CG038600 Rh2DG038200
rosa_wichuraiana	Rw1G040810 Rw1G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccII	CGCG	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	273
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	48, 364
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	203
AhlI	ACTAGT	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	2 cut(s)	71, 259
AluI	AGCT	2 cut(s)	71, 259
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	4 cut(s)	62, 65, 68, 389
ApoI	RAATTY	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	101, 240
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	74, 77, 80, 376
BccI	CCATC	3 cut(s)	139, 140, 145
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	3 cut(s)	44, 59, 213
BisI	GCNGC	4 cut(s)	63, 66, 69, 390
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	4 cut(s)	64, 67, 70, 391
BmcAI	AGTACT	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	242, 406
BmtI	GCTAGC	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	233, 377
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	74, 77, 80, 376
Bsh1236I	CGCG	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	2 cut(s)	5, 106
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	335
BspOI	GCTAGC	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	233, 377
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 74
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	74, 77, 80, 376
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	233, 377
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	47, 363
CviAII	CATG	3 cut(s)	31, 37, 98
CviJI	RGCY	5 cut(s)	71, 166, 259, 290, 346
CviKI_1	RGCY	5 cut(s)	71, 166, 259, 290, 346
CviQI	GTAC	2 cut(s)	47, 363
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco72I	CACGTG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	314
FaeI	CATG	3 cut(s)	34, 40, 101
FaiI	YATR	7 cut(s)	32, 38, 81, 99, 193, 311, 381
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	3 cut(s)	30, 36, 97
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 390
FokI	GGATG	2 cut(s)	220, 384
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 390
FspBI	CTAG	3 cut(s)	44, 59, 213
GluI	GCNGC	4 cut(s)	63, 66, 69, 390
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	3 cut(s)	34, 40, 101
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	2 cut(s)	101, 240
Hpy166II	GTNNAC	2 cut(s)	321, 365
Hpy188I	TCNGA	2 cut(s)	145, 415
Hpy8I	GTNNAC	2 cut(s)	321, 365
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	54, 183
HpyCH4V	TGCA	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 74
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	54, 183
Hsp92II	CATG	3 cut(s)	34, 40, 101
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	180, 264, 360, 393
Lsp1109I	GCAGC	4 cut(s)	74, 77, 80, 376
LweI	GCATC	2 cut(s)	242, 406
MaeI	CTAG	3 cut(s)	44, 59, 213
MaeII	ACGT	2 cut(s)	54, 183
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	3 cut(s)	240, 273, 401
MnlI	CCTC	1 cut(s)	163
MseI	TTAA	3 cut(s)	176, 327, 404
MslI	CAYNNNNRTG	2 cut(s)	35, 370
MspI	CCGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	5, 106
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	68, 74
NdeII	GATC	1 cut(s)	94
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	34, 40, 101
PaeR7I	CTCGAG	1 cut(s)	314
PctI	GAATGC	2 cut(s)	5, 106
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	64, 67, 70, 391
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	48, 364
RsaNI	GTAC	2 cut(s)	47, 363
RseI	CAYNNNNRTG	2 cut(s)	35, 370
SaqAI	TTAA	3 cut(s)	176, 327, 404
SatI	GCNGC	4 cut(s)	63, 66, 69, 390
Sau3AI	GATC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	2 cut(s)	242, 406
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	35, 370
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	3 cut(s)	240, 273, 401
SspMI	CTAG	3 cut(s)	44, 59, 213
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	57, 186
TaqI	TCGA	3 cut(s)	110, 180, 315
TasI	AATT	3 cut(s)	240, 273, 401
TatI	WGTACW	2 cut(s)	46, 362
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	176, 327, 404
Tru9I	TTAA	3 cut(s)	176, 327, 404
TseI	GCWGC	4 cut(s)	62, 65, 68, 389
TspDTI	ATGAA	4 cut(s)	25, 99, 234, 266
VneI	GTGCAC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	3 cut(s)	44, 59, 213
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.