Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005513

Physical Location & Seq

Genomic Coordinates Forward (+)

2720787 .. 2724116

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATTCGCTGCTGCTGGGATGCAATTGACTGGCTCGAGCCGGAGAGGGAGTCGTCGGCGTCTGGGAGGTCGAGGTCAGCTTGTACAGGTGAGATCGAGGTCGTCGCTGGCGGCGGTGTGCAGGTGGAGTCGTCGCTGGCGGAGGTGTGCAGGTTTTCCGTGTTCATGCTACTAGTACTACTCGTGCTAGCAGCAACAGCTAATGCTCATAATGAAGGTGATGATCATGCAACGCCTCCCATTCTGTCTCCAAATCATCCACAACCGCCATCATCAGAAGGTTCGGGTTCTGCTAAGCCGGAGCCCGGAGGGGTTAGTCGACATAGGTATATATTGCAATTTTCACTGTACTTTGAGATCTATTCTCATAAAGTTAATTATCTTAAAGTTAAGACGTTTGTGACATTTATGCTGGATGCGGATGCAGATGCTCATAGAGGGAACTACTATTTGGGTTCTTGCTACAACAAGTGCGAGAAAAACTATCAAGCACTCGCCGAGATTGGGACACTTGGCCTCCTCGCAGATCGTGTAGAGCTTCAATTCCCTAAGCTTCTTCTTAATCTGCGTGTACTTCTCGCCGCCGGGGATCGACTCCTTCATCCATTTCAACTTCGGCAGCTGCTTCTTCTTCGTGCCGACCTCCACGGAGTATGGACCTTTGCCTTCGATGAATTTCGTGAGGGTGGGAGACTCCGCGGCGAGGCGAGCCCGGAGGTCCGCCAGGGTTGGCGGCAATTGGGAGGAGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.76

Weight (kDa)

6.07

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03011 FvH4_1g03012
rosa_laevigata	RLG00000015946 RLG00000015949 RLG00000026127 RLG00000026132 RLG00000026133
rosa_multiflora	Rmu_co8406007.1_g000001 Rmu_sc0004235.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152720 Rroxscaffold_4G00277610 Rroxscaffold_4G00277620
rosa_rugosa	Rorug01G0438300 Rorug01G0483400
rosa_samantha	Rh1AG464000 Rh1AG464600 Rh1BG421200 Rh1BG421300 Rh1CG434700 Rh1CG435300 Rh1DG453800 Rh1DG453900 Rh2AG038200 Rh2BG037500 Rh2BG037700 Rh2CG038600 Rh2DG038200
rosa_wichuraiana	Rw1G040810 Rw1G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	2 cut(s)	112, 141
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	699
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	4 cut(s)	85, 177, 350, 573
AfiI	CCNNNNNNNGG	3 cut(s)	305, 504, 703
AgsI	TTSAA	2 cut(s)	542, 611
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	723
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	5 cut(s)	80, 200, 538, 553, 622
AluI	AGCT	5 cut(s)	80, 200, 538, 553, 622
Alw26I	GTCTC	2 cut(s)	252, 685
AlwI	GGATC	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	5 cut(s)	9, 12, 191, 619, 622
ApoI	RAATTY	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	657, 718
AsuC2I	CCSGG	3 cut(s)	306, 586, 713
AsuHPI	GGTGA	2 cut(s)	101, 230
AsuNHI	GCTAGC	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	657, 718
BanII	GRGCYC	2 cut(s)	306, 713
BauI	CACGAG	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	203, 609, 631
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	725
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	3 cut(s)	306, 586, 713
BcoDI	GTCTC	2 cut(s)	252, 685
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	2 cut(s)	173, 188
BfuAI	ACCTGC	2 cut(s)	112, 141
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	9 cut(s)	10, 13, 112, 192, 582, 620, 623, 700, 734
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	9 cut(s)	11, 14, 113, 193, 583, 621, 624, 701, 735
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	306, 586, 713, 725
Bme18I	GGWCC	2 cut(s)	657, 718
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	657, 718
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	4 cut(s)	306, 586, 713, 725
BmsI	GCATC	4 cut(s)	10, 406, 412, 418
BmtI	GCTAGC	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuMI	CCSGG	3 cut(s)	306, 586, 713
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	585, 646, 697, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 501, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 504, 703
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	4 cut(s)	585, 646, 697, 724
BseGI	GGATG	5 cut(s)	25, 256, 421, 427, 601
BseLI	CCNNNNNNNGG	3 cut(s)	305, 504, 703
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	203, 609, 631
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	2 cut(s)	140, 169
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	5 cut(s)	41, 299, 306, 585, 713
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	3 cut(s)	305, 504, 703
BsmAI	GTCTC	2 cut(s)	252, 685
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	306, 713
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	5 cut(s)	93, 223, 357, 526, 589
Bsp1720I	GCTNAGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	2 cut(s)	112, 141
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	585, 646, 697, 724
BssMI	GATC	5 cut(s)	93, 223, 357, 526, 589
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	109, 138, 189, 709
BstDEI	CTNAG	2 cut(s)	294, 549
BstDSI	CCRYGG	2 cut(s)	646, 697
BstF5I	GGATG	5 cut(s)	25, 256, 421, 427, 601
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	5 cut(s)	96, 226, 360, 529, 592
BstMAI	GTCTC	2 cut(s)	252, 685
BstMBI	GATC	5 cut(s)	93, 223, 357, 526, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 708
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	4 cut(s)	304, 584, 711, 723
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	203, 609, 631
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	2 cut(s)	646, 697
BtsCI	GGATG	5 cut(s)	25, 256, 421, 427, 601
BtsIMutI	CAGTG	1 cut(s)	344
BveI	ACCTGC	2 cut(s)	112, 141
Cac8I	GCNNGC	4 cut(s)	109, 138, 189, 709
Cfr13I	GGNCC	2 cut(s)	657, 718
Cfr42I	CCGCGG	1 cut(s)	700
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	84, 176, 349, 572
CviAII	CATG	2 cut(s)	166, 227
CviQI	GTAC	4 cut(s)	84, 176, 349, 572
DdeI	CTNAG	2 cut(s)	294, 549
DpnI	GATC	5 cut(s)	95, 225, 359, 528, 591
DpnII	GATC	5 cut(s)	93, 223, 357, 526, 589
EciI	GGCGGA	2 cut(s)	155, 710
Eco24I	GRGCYC	2 cut(s)	306, 713
Eco47I	GGWCC	2 cut(s)	657, 718
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	723
EcoT38I	GRGCYC	2 cut(s)	306, 713
FaeI	CATG	2 cut(s)	169, 230
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	165, 226
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	9 cut(s)	10, 13, 112, 192, 582, 620, 623, 700, 734
FokI	GGATG	5 cut(s)	32, 243, 428, 434, 588
FriOI	GRGCYC	2 cut(s)	306, 713
Fsp4HI	GCNGC	9 cut(s)	10, 13, 112, 192, 582, 620, 623, 700, 734
FspBI	CTAG	2 cut(s)	173, 188
GluI	GCNGC	9 cut(s)	10, 13, 112, 192, 582, 620, 623, 700, 734
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	5 cut(s)	41, 299, 306, 585, 713
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	169, 230
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	5 cut(s)	4, 50, 128, 594, 693
HpaII	CCGG	5 cut(s)	41, 299, 306, 585, 713
HphI	GGTGA	2 cut(s)	101, 230
Hpy166II	GTNNAC	2 cut(s)	320, 572
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	2 cut(s)	320, 572
Hpy99I	CGWCG	3 cut(s)	58, 107, 136
HpyAV	CCTTC	4 cut(s)	209, 272, 608, 676
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	6 cut(s)	23, 121, 150, 230, 337, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 708
HpyF3I	CTNAG	2 cut(s)	294, 549
HpySE526I	ACGT	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	169, 230
Ksp22I	TGATCA	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	93, 223, 357, 526, 589
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	3 cut(s)	203, 609, 631
LweI	GCATC	4 cut(s)	10, 406, 412, 418
MaeI	CTAG	2 cut(s)	173, 188
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	95, 225, 359, 528, 591
MboI	GATC	5 cut(s)	93, 223, 357, 526, 589
MboII	GAAGA	3 cut(s)	548, 620, 623
MfeI	CAATTG	2 cut(s)	24, 737
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	306, 713
MluCI	AATT	6 cut(s)	24, 338, 376, 542, 674, 737
MlyI	GAGTC	4 cut(s)	59, 137, 588, 687
MseI	TTAA	4 cut(s)	375, 384, 390, 561
MspA1I	CMGCKG	2 cut(s)	622, 699
MspI	CCGG	5 cut(s)	41, 299, 306, 585, 713
MspR9I	CCNGG	4 cut(s)	306, 586, 713, 725
MunI	CAATTG	2 cut(s)	24, 737
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	2 cut(s)	197, 708
NciI	CCSGG	3 cut(s)	306, 586, 713
NdeII	GATC	5 cut(s)	93, 223, 357, 526, 589
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	169, 230
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	35
PaqCI	CACCTGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	9 cut(s)	11, 14, 113, 193, 583, 621, 624, 701, 735
PleI	GAGTC	4 cut(s)	58, 136, 588, 687
PpsI	GAGTC	4 cut(s)	58, 136, 588, 687
Psp6I	CCWGG	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	657, 718
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	4 cut(s)	85, 177, 350, 573
RsaNI	GTAC	4 cut(s)	84, 176, 349, 572
SacII	CCGCGG	1 cut(s)	700
SalI	GTCGAC	1 cut(s)	318
SaqAI	TTAA	4 cut(s)	375, 384, 390, 561
SatI	GCNGC	9 cut(s)	10, 13, 112, 192, 582, 620, 623, 700, 734
Sau3AI	GATC	5 cut(s)	93, 223, 357, 526, 589
Sau96I	GGNCC	2 cut(s)	657, 718
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	4 cut(s)	59, 137, 588, 687
ScrFI	CCNGG	4 cut(s)	306, 586, 713, 725
SduI	GDGCHC	2 cut(s)	306, 713
SfaNI	GCATC	4 cut(s)	10, 406, 412, 418
Sfr274I	CTCGAG	1 cut(s)	35
Sfr303I	CCGCGG	1 cut(s)	700
SgrBI	CCGCGG	1 cut(s)	700
SinI	GGWCC	2 cut(s)	657, 718
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	6 cut(s)	24, 338, 376, 542, 674, 737
SspMI	CTAG	2 cut(s)	173, 188
StyD4I	CCNGG	4 cut(s)	304, 584, 711, 723
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	6 cut(s)	36, 71, 96, 319, 592, 669
TasI	AATT	6 cut(s)	24, 338, 376, 542, 674, 737
TatI	WGTACW	4 cut(s)	83, 175, 348, 571
TauI	GCSGC	4 cut(s)	114, 584, 702, 736
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	375, 384, 390, 561
Tru9I	TTAA	4 cut(s)	375, 384, 390, 561
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	5 cut(s)	9, 12, 191, 619, 622
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	4 cut(s)	154, 228, 590, 687
TspGWI	ACGGA	2 cut(s)	148, 663
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	2 cut(s)	657, 718
XapI	RAATTY	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	2 cut(s)	173, 188
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.