Rmu_sc0004235.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004235.1
OG0005513
Physical Location & Seq
Forward (+)
36127 .. 36673
547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004235.1_g000018.1.cds

Sequence Viewer

Length: 453 bp
atgttcatgctactagtactactcgtgctagcagcagcagctcttgctcataatgaaggtgatgatcatgcaacgcattcgattcagcctccaaatccaccatcgccatcatcagatggttcgggttctgctaagccggagggtttaatcgacgtaggtctatgtgccattcaatgtggtgctaggtgttttggtcgtaaggcatccctaatttcatcacctgataagcttcactttcccaaaattcatttaggtagggctatttgttttagtaaatgtatgctcgagtgcaccattaacaacgcgaatgtgacgccagaactctatcattgtacacttggatgtgcttataagtctgctgctaaaacaaaattaactggttcagatgctgatgttgggaacaactatttgggttcttgctacaacaagtgcgagaagaactatcaaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.87

Weight (kDa)

7.54

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccII CGCG 1 cut(s) 305
AcsI RAATTY 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 18, 334
AgsI TTSAA 1 cut(s) 173
AhlI ACTAGT 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 41, 229
AluI AGCT 2 cut(s) 41, 229
Alw21I GWGCWC 1 cut(s) 293
Alw44I GTGCAC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 289
ApeKI GCWGC 4 cut(s) 32, 35, 38, 359
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 71, 210
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 293
BauI CACGAG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 4 cut(s) 44, 47, 50, 346
BccI CCATC 3 cut(s) 109, 110, 115
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BclI TGATCA 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 29, 183
BisI GCNGC 4 cut(s) 33, 36, 39, 360
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 4 cut(s) 34, 37, 40, 361
BmcAI AGTACT 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 284
BmsI GCATC 2 cut(s) 212, 376
BmtI GCTAGC 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 203, 347
BseNI ACTGG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 4 cut(s) 44, 47, 50, 346
Bsh1236I CGCG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 137
BsmI GAATGC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 1 cut(s) 64
Bsp1720I GCTNAGC 1 cut(s) 132
BspFNI CGCG 1 cut(s) 305
BspOI GCTAGC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 332
BsrI ACTGG 1 cut(s) 382
BssMI GATC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 203, 347
BstFNI CGCG 1 cut(s) 305
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 38, 44
BstPAI GACNNNNGTC 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 44, 47, 50, 346
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 203, 347
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 389
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 17, 333
CviAII CATG 2 cut(s) 7, 68
CviJI RGCY 5 cut(s) 41, 88, 136, 229, 260
CviKI_1 RGCY 5 cut(s) 41, 88, 136, 229, 260
CviQI GTAC 2 cut(s) 17, 333
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 284
FaeI CATG 2 cut(s) 10, 71
FaiI YATR 6 cut(s) 8, 51, 69, 163, 281, 351
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 2 cut(s) 6, 67
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 33, 36, 39, 360
FokI GGATG 2 cut(s) 190, 354
Fsp4HI GCNGC 4 cut(s) 33, 36, 39, 360
FspBI CTAG 3 cut(s) 14, 29, 183
GluI GCNGC 4 cut(s) 33, 36, 39, 360
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 10, 71
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 71, 210
Hpy166II GTNNAC 2 cut(s) 291, 335
Hpy188I TCNGA 2 cut(s) 115, 385
Hpy8I GTNNAC 2 cut(s) 291, 335
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 71, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 44
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 10, 71
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 150, 234, 330, 363
Lsp1109I GCAGC 4 cut(s) 44, 47, 50, 346
LweI GCATC 2 cut(s) 212, 376
MaeI CTAG 3 cut(s) 14, 29, 183
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 210, 243, 371
MnlI CCTC 2 cut(s) 99, 133
MseI TTAA 3 cut(s) 146, 297, 374
MslI CAYNNNNRTG 1 cut(s) 340
MspI CCGG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 76
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 38, 44
NdeII GATC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 10, 71
NmuCI GTSAC 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 284
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 4 cut(s) 34, 37, 40, 361
PshAI GACNNNNGTC 1 cut(s) 156
PsiI TTATAA 1 cut(s) 351
PspXI VCTCGAGB 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 18, 334
RsaNI GTAC 2 cut(s) 17, 333
RseI CAYNNNNRTG 1 cut(s) 340
SaqAI TTAA 3 cut(s) 146, 297, 374
SatI GCNGC 4 cut(s) 33, 36, 39, 360
Sau3AI GATC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 18
SduI GDGCHC 1 cut(s) 293
SetI ASST 9 cut(s) 43, 61, 156, 160, 188, 223, 231, 256, 451
SfaNI GCATC 2 cut(s) 212, 376
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 3 cut(s) 210, 243, 371
SspMI CTAG 3 cut(s) 14, 29, 183
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 80, 150, 285
TasI AATT 3 cut(s) 210, 243, 371
TatI WGTACW 2 cut(s) 16, 332
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 146, 297, 374
Tru9I TTAA 3 cut(s) 146, 297, 374
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 4 cut(s) 32, 35, 38, 359
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 69, 204, 236
VneI GTGCAC 1 cut(s) 289
XapI RAATTY 1 cut(s) 243
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 3 cut(s) 14, 29, 183
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.