FvH4_1g03830

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006141
Physical Location & Seq
Forward (+)
2039787 .. 2042378
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03830.t1

Sequence Viewer

Length: 1050 bp
ATGCCTAAGGAAAGAAGGGACCGTTCTGTGTCTCGTGAGAGGTACAGAGCATCTCCTTATCCATGCAGCTCCAGTCATACAAAGCGTCCCTCACTCAAAATTCCTTCAGAAACTGAAGAAAATGTGAAAGAGTGGGAAGAAGCTAGGTGCCCAGTTTGTTTGGAACATCCACACAATGCAGTTCTCCTCATATGTTCATCTTTTGAGAGGGGATGCCGCCCTTACATGTGTGACACAAGCTACCGCCATTCAAACTGTCTAGATCAGTTCTGCAAGTCATTCTCAGAAGAGGATCCACCAGAGATACTGCCACAAGAAGAAACTCTGCTTTCAGATAATCTGTTGCCTCCATTTGAAACTTCTGAATCAATAATTACTGATGTGCAGACTGATATAACCGAGGAAGAGCCCCCACCCATGATTCCCATATCTTGTGAACACCAGGAACAGCCCAAGCTTGTGTGCCCACTCTGCCGTGGGGAGGTAAAAGATTGGATAATTGTGGAGCCTGCTCGTTGCTTCATGAATGCAAAATTGAGAAACTGTTCTTGTGAGACTTGTAGTTTTAGTGGAACCTATACAGATCTCAGGAAGCATGCAAGGCTGGAGCACCCGCAAACACGCCCATCAGAGGCAGACCCAGAGCGACAACGTGCCTGGAGGAGTTTGGAGCGGCAGAGGGACATTGGTGATCTGCTCAGCACACTCCAATCTTCAACTGGAGAGGATAGGGGTGATGACAGTAGCTTGGCAGTTGAACATGATGGAGGAGGATGGCTAACTGTATTCTTTCTAGTTAGAATTTATCGACCTACATCTGGGTCCAGCTCGCGGAGCAGCAGTTGGTCTCCTACCACTAGAACTAGAGCACAAATTAGTATGAGAAGGAGAGCTACCAGACTTTGGGGAGAAAGCTATGAGAGTGAAGCTGCTTCTTCTTCAAGGGAAGCGGACAATGACTCCTCAGATGGTGGCTCGGCCCCTACTAGGAGGCAGAGCGCACGTCTCCGGCAAAGGCGACGGACAACACCGGACAACAACCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

350

Amino Acids

39.88

Weight (kDa)

5.87

Isoelectric Point (pI)

73.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 46 - 234 6e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 903
AccBSI CCGCTC 1 cut(s) 673
AccII CGCG 1 cut(s) 832
AciI CCGC 6 cut(s) 217, 244, 614, 673, 832, 950
AclWI GGATC 2 cut(s) 287, 300
AcsI RAATTY 2 cut(s) 99, 801
AcuI CTGAAG 2 cut(s) 90, 135
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 6 cut(s) 481, 631, 818, 831, 903, 987
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 5 cut(s) 252, 356, 717, 758, 942
AjiI CACGTC 1 cut(s) 1004
AjnI CCWGG 2 cut(s) 441, 656
AluBI AGCT 9 cut(s) 69, 143, 240, 457, 747, 828, 893, 915, 929
AluI AGCT 9 cut(s) 69, 143, 240, 457, 747, 828, 893, 915, 929
Alw21I GWGCWC 2 cut(s) 612, 871
Alw26I GTCTC 4 cut(s) 36, 548, 852, 1010
AlwI GGATC 2 cut(s) 287, 300
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 978
ApeKI GCWGC 3 cut(s) 66, 837, 929
ApoI RAATTY 2 cut(s) 99, 801
Asp700I GAANNNNTTC 1 cut(s) 544
AspLEI GCGC 1 cut(s) 1001
AspS9I GGNCC 3 cut(s) 19, 822, 979
AsuHPI GGTGA 2 cut(s) 701, 746
AvaII GGWCC 2 cut(s) 19, 822
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 2 cut(s) 152, 467
BamHI GGATCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 411
BarI GAAGNNNNNNTAC 2 cut(s) 877, 909
BauI CACGAG 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 612, 871
BbvI GCAGC 3 cut(s) 78, 849, 916
BccI CCATC 4 cut(s) 634, 758, 768, 962
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 2 cut(s) 443, 658
BcoDI GTCTC 4 cut(s) 36, 548, 852, 1010
BfaI CTAG 6 cut(s) 144, 260, 794, 858, 864, 987
BglII AGATCT 1 cut(s) 583
BisI GCNGC 5 cut(s) 67, 217, 674, 838, 930
BlpI GCTNAGC 1 cut(s) 698
BlsI GCNGC 5 cut(s) 68, 218, 675, 839, 931
Bme1390I CCNGG 2 cut(s) 443, 658
Bme18I GGWCC 2 cut(s) 19, 822
BmgBI CACGTC 1 cut(s) 1004
BmgT120I GGNCC 3 cut(s) 19, 822, 979
BmiI GGNNCC 7 cut(s) 20, 149, 294, 507, 574, 823, 981
BmrFI CCNGG 2 cut(s) 443, 658
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 59, 203
BmuI ACTGGG 1 cut(s) 146
BpmI CTGGAG 4 cut(s) 55, 626, 679, 741
Bpu1102I GCTNAGC 1 cut(s) 698
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 399, 475
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 4 cut(s) 826, 856, 944, 974
Bsc4I CCNNNNNNNGG 6 cut(s) 481, 631, 818, 831, 903, 987
Bse1I ACTGG 3 cut(s) 72, 152, 724
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 2 cut(s) 443, 658
BseDI CCNNGG 2 cut(s) 399, 475
BseGI GGATG 3 cut(s) 166, 218, 779
BseLI CCNNNNNNNGG 6 cut(s) 481, 631, 818, 831, 903, 987
BseMII CTCAG 4 cut(s) 297, 601, 712, 978
BseNI ACTGG 3 cut(s) 72, 152, 724
BseRI GAGGAG 4 cut(s) 176, 676, 783, 952
BseSI GKGCMC 2 cut(s) 152, 467
BseXI GCAGC 3 cut(s) 78, 849, 916
BsgI GTGCAG 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 832
BshFI GGCC 1 cut(s) 980
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 612, 871
BsiSI CCGG 2 cut(s) 1009, 1031
BslFI GGGAC 3 cut(s) 32, 72, 695
BslI CCNNNNNNNGG 6 cut(s) 481, 631, 818, 831, 903, 987
BsmAI GTCTC 4 cut(s) 36, 548, 852, 1010
BsmBI CGTCTC 1 cut(s) 1010
BsmFI GGGAC 3 cut(s) 32, 72, 695
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 980
Bso31I GGTCTC 1 cut(s) 852
Bsp1286I GDGCHC 5 cut(s) 152, 411, 467, 612, 871
Bsp143I GATC 4 cut(s) 262, 292, 583, 691
Bsp1720I GCTNAGC 1 cut(s) 698
BspACI CCGC 6 cut(s) 217, 244, 614, 673, 832, 950
BspANI GGCC 1 cut(s) 980
BspCNI CTCAG 4 cut(s) 296, 600, 711, 977
BspFNI CGCG 1 cut(s) 832
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 7 cut(s) 20, 149, 294, 507, 574, 823, 981
BspPI GGATC 2 cut(s) 287, 300
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 852
BsrBI CCGCTC 1 cut(s) 673
BsrI ACTGG 3 cut(s) 72, 152, 724
BssECI CCNNGG 2 cut(s) 399, 475
BssMI GATC 4 cut(s) 262, 292, 583, 691
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 443, 658
Bst4CI ACNGT 5 cut(s) 23, 257, 545, 743, 784
Bst6I CTCTTC 2 cut(s) 282, 399
BstC8I GCNNGC 3 cut(s) 510, 597, 830
BstDEI CTNAG 5 cut(s) 6, 283, 587, 698, 964
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 166, 218, 779
BstFNI CGCG 1 cut(s) 832
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 4 cut(s) 265, 295, 586, 694
BstMAI GTCTC 4 cut(s) 36, 548, 852, 1010
BstMBI GATC 4 cut(s) 262, 292, 583, 691
BstMWI GCNNNNNNNGC 3 cut(s) 471, 601, 834
BstNI CCWGG 2 cut(s) 443, 658
BstNSI RCATGY 2 cut(s) 229, 599
BstSCI CCNGG 2 cut(s) 441, 656
BstSLI GKGCMC 2 cut(s) 152, 467
BstUI CGCG 1 cut(s) 832
BstV1I GCAGC 3 cut(s) 78, 849, 916
BstX2I RGATCY 2 cut(s) 292, 583
BstYI RGATCY 2 cut(s) 292, 583
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 980
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 1004
BtsCI GGATG 3 cut(s) 166, 218, 779
Cac8I GCNNGC 3 cut(s) 510, 597, 830
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 1001
Cfr13I GGNCC 3 cut(s) 19, 822, 979
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 43
CviAII CATG 6 cut(s) 63, 226, 418, 523, 596, 761
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 5 cut(s) 6, 283, 587, 698, 964
DpnI GATC 4 cut(s) 264, 294, 585, 693
DpnII GATC 4 cut(s) 262, 292, 583, 691
Eam1104I CTCTTC 2 cut(s) 282, 399
EarI CTCTTC 2 cut(s) 282, 399
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 19, 822
Eco57I CTGAAG 2 cut(s) 90, 135
Eco81I CCTNAGG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 441, 656
EcoT38I GRGCYC 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 1010
FaeI CATG 6 cut(s) 66, 229, 421, 526, 599, 764
FaqI GGGAC 3 cut(s) 32, 72, 695
FatI CATG 6 cut(s) 62, 225, 417, 522, 595, 760
FauI CCCGC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 5 cut(s) 67, 217, 674, 838, 930
FokI GGATG 3 cut(s) 153, 225, 786
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 5 cut(s) 67, 217, 674, 838, 930
FspBI CTAG 6 cut(s) 144, 260, 794, 858, 864, 987
GlaI GCGC 1 cut(s) 1000
GluI GCNGC 5 cut(s) 67, 217, 674, 838, 930
GsuI CTGGAG 4 cut(s) 55, 626, 679, 741
HaeIII GGCC 1 cut(s) 980
HapII CCGG 2 cut(s) 1009, 1031
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 1001
Hin1II CATG 6 cut(s) 66, 229, 421, 526, 599, 764
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 365, 421, 959
HpaII CCGG 2 cut(s) 1009, 1031
HphI GGTGA 2 cut(s) 701, 746
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 6 cut(s) 109, 286, 334, 364, 631, 967
Hpy188III TCNNGA 4 cut(s) 35, 260, 523, 589
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 3 cut(s) 9, 114, 879
HpyCH4III ACNGT 5 cut(s) 23, 257, 545, 743, 784
HpyCH4IV ACGT 2 cut(s) 652, 1003
HpyCH4V TGCA 6 cut(s) 66, 179, 273, 385, 530, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 601, 834
HpyF3I CTNAG 5 cut(s) 6, 283, 587, 698, 964
HpySE526I ACGT 2 cut(s) 652, 1003
Hsp92II CATG 6 cut(s) 66, 229, 421, 526, 599, 764
HspAI GCGC 1 cut(s) 999
Kzo9I GATC 4 cut(s) 262, 292, 583, 691
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 5 cut(s) 74, 505, 607, 670, 834
Lsp1109I GCAGC 3 cut(s) 78, 849, 916
LweI GCATC 2 cut(s) 59, 203
MaeI CTAG 6 cut(s) 144, 260, 794, 858, 864, 987
MaeII ACGT 2 cut(s) 652, 1003
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 264, 294, 585, 693
MbiI CCGCTC 1 cut(s) 673
MboI GATC 4 cut(s) 262, 292, 583, 691
MboII GAAGA 8 cut(s) 128, 149, 299, 329, 416, 705, 927, 930
MflI RGATCY 2 cut(s) 292, 583
MhlI GDGCHC 5 cut(s) 152, 411, 467, 612, 871
MluCI AATT 6 cut(s) 99, 372, 498, 533, 801, 873
MlyI GAGTC 1 cut(s) 953
MroXI GAANNNNTTC 1 cut(s) 544
MspI CCGG 2 cut(s) 1009, 1031
MspR9I CCNGG 2 cut(s) 443, 658
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 2 cut(s) 443, 658
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 3 cut(s) 471, 601, 834
NdeI CATATG 1 cut(s) 191
NdeII GATC 4 cut(s) 262, 292, 583, 691
NlaIII CATG 6 cut(s) 66, 229, 421, 526, 599, 764
NlaIV GGNNCC 7 cut(s) 20, 149, 294, 507, 574, 823, 981
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 2 cut(s) 229, 599
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 2 cut(s) 365, 421
PflMI CCANNNNNTGG 1 cut(s) 903
PkrI GCNGC 5 cut(s) 68, 218, 675, 839, 931
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 441, 656
PspGI CCWGG 2 cut(s) 441, 656
PspN4I GGNNCC 7 cut(s) 20, 149, 294, 507, 574, 823, 981
PspPI GGNCC 3 cut(s) 19, 822, 979
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 292, 583
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 5 cut(s) 67, 217, 674, 838, 930
Sau3AI GATC 4 cut(s) 262, 292, 583, 691
Sau96I GGNCC 3 cut(s) 19, 822, 979
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 2 cut(s) 443, 658
SduI GDGCHC 5 cut(s) 152, 411, 467, 612, 871
SfaNI GCATC 2 cut(s) 59, 203
SinI GGWCC 2 cut(s) 19, 822
SphI GCATGC 1 cut(s) 599
Sse9I AATT 6 cut(s) 99, 372, 498, 533, 801, 873
SsiI CCGC 6 cut(s) 217, 244, 614, 673, 832, 950
SspMI CTAG 6 cut(s) 144, 260, 794, 858, 864, 987
StyD4I CCNGG 2 cut(s) 441, 656
TaaI ACNGT 5 cut(s) 23, 257, 545, 743, 784
TaiI ACGT 2 cut(s) 655, 1006
TaqI TCGA 1 cut(s) 808
TasI AATT 6 cut(s) 99, 372, 498, 533, 801, 873
TauI GCSGC 2 cut(s) 219, 676
TfiI GAWTC 2 cut(s) 365, 421
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 66, 837, 929
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 186, 511, 539
TspGWI ACGGA 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 903
VpaK11BI GGWCC 2 cut(s) 19, 822
XapI RAATTY 2 cut(s) 99, 801
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 2 cut(s) 229, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 6 cut(s) 144, 260, 794, 858, 864, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.