Rh2CG044400

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006141
Physical Location & Seq
Forward (+)
3513801 .. 3516623
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG044400.1

Sequence Viewer

Length: 1032 bp
ATGCCTAAGGAAAGAAGGGACCGTTCTGTGTCTCGAGAGAGGTACAGAGCATCTCCTTATCCATGCAGCTCCAGTCATACAAAGCGTCCCTCACTCAAAATTCCTTCAGAAACTGCAGAAAATGTGAAAGAGTGGGAAGAAGCCAGGTGCCCAGTTTGTTTGGAACATCCACACAATGCAGTTCTGCTCATATGTTCATCTTTTGAGAAGGGGTGCCGCCCTTACATGTGTGACACAAGCTACCGCCATTCAAACTGTCTTGATCAGTTCTGCAAGTCATTTTCAGAAGAAATCTCACCAGAGATGCCGCCAGAAGAAGACATTCAGCTTTCAGATACTCAGCTGCTTCCATTTGAAACTTCTGAATCAATAATTACTGGTGTGCAAAGTGTTGCAACTGAGGAAGAACCGCCAACCATGAGTCCCATATCTTGTGAACACCAGGAACAGCCCAAACTTGTGTGCCCTCTCTGCCGTGGGGAGGTGAAAGATTGGATGATTGTGGAGCCTGCTCGTTGTTTCATGAATGCAAAATCAAGAAACTGTTCTTGTGAGACGTGCAGTTTTAGCGGAACCTATACAGATCTCAGAAAGCATGCAAGGCTGGAGCACCCGCAAGCACGGCCATCAGAGGCTGACCCAGAGCGACAGCGTTCCTGGAGGAGTTTGGAGCGACAGAGGGACATTGGTGATCTGCTGAGCACACTCCAATCTTCTATGGGAGAGGATAGGGCTGAAGAAGAACAGGATGGGGGATGGCTAACTGTATTCTTCCTAGTTAGAATCTACCGACCTTCTGGGTCCAGTTCGAGGAGCAGCAGTTGGTCTCCTACCACAAGAACTAGAGCACAAATTAGTATGAGAAGGAGGGCTACCAGACTTGGGGGAGAAAGCTACGAGGGTGAAGCTGCGTCGTCTTCAAGAGGAGAAGCCGACAATGACTCCTCAGATGGTGGCTCAGCCCCTACTAGGAGGCAGAGTGCGCGTCTCCGGCAAAGGCGACGGACAAGCCCAGACAACAACCAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

343

Amino Acids

38.97

Weight (kDa)

6.24

Isoelectric Point (pI)

80.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 46 - 234 1.2e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 147, 213
AccII CGCG 1 cut(s) 985
AciI CCGC 6 cut(s) 217, 244, 308, 410, 570, 614
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 90, 756
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 4 cut(s) 481, 810, 882, 969
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 252, 356, 921
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 143, 441, 656
AluBI AGCT 6 cut(s) 69, 240, 328, 343, 894, 908
AluI AGCT 6 cut(s) 69, 240, 328, 343, 894, 908
Alw21I GWGCWC 3 cut(s) 612, 704, 850
Alw26I GTCTC 4 cut(s) 36, 548, 831, 992
AlwNI CAGNNNCTG 2 cut(s) 113, 635
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 623
ApeKI GCWGC 4 cut(s) 66, 343, 816, 908
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 2 cut(s) 321, 544
AspLEI GCGC 1 cut(s) 985
AspS9I GGNCC 2 cut(s) 19, 801
AsuHPI GGTGA 4 cut(s) 288, 496, 701, 914
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 2 cut(s) 19, 801
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 2 cut(s) 152, 467
BanI GGYRCC 2 cut(s) 147, 213
BarI GAAGNNNNNNTAC 2 cut(s) 856, 888
BbsI GAAGAC 2 cut(s) 324, 909
Bbv12I GWGCWC 3 cut(s) 612, 704, 850
BbvI GCAGC 4 cut(s) 78, 330, 828, 895
BccI CCATC 4 cut(s) 634, 743, 750, 944
BceAI ACGGC 2 cut(s) 459, 638
BciT130I CCWGG 3 cut(s) 145, 443, 658
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 4 cut(s) 36, 548, 831, 992
BfaI CTAG 3 cut(s) 776, 843, 969
BfmI CTRYAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 583
BisI GCNGC 6 cut(s) 67, 217, 308, 344, 817, 909
BlpI GCTNAGC 2 cut(s) 698, 958
BlsI GCNGC 6 cut(s) 68, 218, 309, 345, 818, 910
Bme1390I CCNGG 3 cut(s) 145, 443, 658
Bme18I GGWCC 2 cut(s) 19, 801
BmeT110I CYCGRG 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 2 cut(s) 19, 801
BmiI GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 802
BmrFI CCNGG 3 cut(s) 145, 443, 658
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 59, 294
BmuI ACTGGG 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 324, 909
BpmI CTGGAG 3 cut(s) 55, 626, 679
Bpu1102I GCTNAGC 2 cut(s) 698, 958
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 1 cut(s) 475
BsaXI ACNNNNNCTCC 6 cut(s) 805, 835, 926, 956, 964, 994
Bsc4I CCNNNNNNNGG 4 cut(s) 481, 810, 882, 969
Bse1I ACTGG 4 cut(s) 72, 152, 382, 804
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 3 cut(s) 145, 443, 658
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 4 cut(s) 166, 501, 754, 761
BseLI CCNNNNNNNGG 4 cut(s) 481, 810, 882, 969
BseMII CTCAG 6 cut(s) 353, 390, 601, 689, 960, 972
BseNI ACTGG 4 cut(s) 72, 152, 382, 804
BseRI GAGGAG 4 cut(s) 676, 826, 934, 939
BseSI GKGCMC 2 cut(s) 152, 467
BseXI GCAGC 4 cut(s) 78, 330, 828, 895
BsgI GTGCAG 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 985
BshFI GGCC 1 cut(s) 625
BshNI GGYRCC 2 cut(s) 147, 213
BsiHKAI GWGCWC 3 cut(s) 612, 704, 850
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 991
BslFI GGGAC 4 cut(s) 32, 72, 408, 695
BslI CCNNNNNNNGG 4 cut(s) 481, 810, 882, 969
BsmAI GTCTC 4 cut(s) 36, 548, 831, 992
BsmBI CGTCTC 2 cut(s) 548, 992
BsmFI GGGAC 4 cut(s) 32, 72, 408, 695
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 625
Bso31I GGTCTC 1 cut(s) 831
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 5 cut(s) 152, 467, 612, 704, 850
Bsp143I GATC 3 cut(s) 262, 583, 691
Bsp1720I GCTNAGC 2 cut(s) 698, 958
BspACI CCGC 6 cut(s) 217, 244, 308, 410, 570, 614
BspANI GGCC 1 cut(s) 625
BspCNI CTCAG 6 cut(s) 352, 391, 600, 690, 959, 971
BspFNI CGCG 1 cut(s) 985
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 802
BspMAI CTGCAG 1 cut(s) 118
BspT107I GGYRCC 2 cut(s) 147, 213
BspTNI GGTCTC 1 cut(s) 831
BsrI ACTGG 4 cut(s) 72, 152, 382, 804
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 3 cut(s) 262, 583, 691
Bst2UI CCWGG 3 cut(s) 145, 443, 658
Bst4CI ACNGT 4 cut(s) 23, 257, 545, 766
BstC8I GCNNGC 3 cut(s) 510, 597, 618
BstDEI CTNAG 7 cut(s) 6, 339, 399, 587, 698, 946, 958
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 4 cut(s) 166, 501, 754, 761
BstFNI CGCG 1 cut(s) 985
BstHHI GCGC 1 cut(s) 985
BstKTI GATC 3 cut(s) 265, 586, 694
BstMAI GTCTC 4 cut(s) 36, 548, 831, 992
BstMBI GATC 3 cut(s) 262, 583, 691
BstMWI GCNNNNNNNGC 6 cut(s) 471, 567, 601, 622, 982, 991
BstNI CCWGG 3 cut(s) 145, 443, 658
BstNSI RCATGY 2 cut(s) 229, 599
BstSCI CCNGG 3 cut(s) 143, 441, 656
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 2 cut(s) 152, 467
BstUI CGCG 1 cut(s) 985
BstV1I GCAGC 4 cut(s) 78, 330, 828, 895
BstV2I GAAGAC 2 cut(s) 324, 909
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 4 cut(s) 166, 501, 754, 761
Cac8I GCNNGC 3 cut(s) 510, 597, 618
CaiI CAGNNNCTG 2 cut(s) 113, 635
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 985
Cfr13I GGNCC 2 cut(s) 19, 801
CseI GACGC 3 cut(s) 74, 900, 974
Csp6I GTAC 1 cut(s) 43
CviAII CATG 6 cut(s) 63, 226, 418, 523, 596, 1029
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 7 cut(s) 6, 339, 399, 587, 698, 946, 958
DpnI GATC 3 cut(s) 264, 585, 693
DpnII GATC 3 cut(s) 262, 583, 691
EaeI YGGCCR 1 cut(s) 623
Eco31I GGTCTC 1 cut(s) 831
Eco47I GGWCC 2 cut(s) 19, 801
Eco57I CTGAAG 2 cut(s) 90, 756
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 3 cut(s) 143, 441, 656
Esp3I CGTCTC 2 cut(s) 548, 992
FaeI CATG 6 cut(s) 66, 229, 421, 526, 599, 1032
FaqI GGGAC 4 cut(s) 32, 72, 408, 695
FatI CATG 6 cut(s) 62, 225, 417, 522, 595, 1028
FauI CCCGC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 191
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 67, 217, 308, 344, 817, 909
FokI GGATG 4 cut(s) 153, 508, 761, 768
Fsp4HI GCNGC 6 cut(s) 67, 217, 308, 344, 817, 909
FspBI CTAG 3 cut(s) 776, 843, 969
GlaI GCGC 1 cut(s) 984
GluI GCNGC 6 cut(s) 67, 217, 308, 344, 817, 909
GsuI CTGGAG 3 cut(s) 55, 626, 679
HaeIII GGCC 1 cut(s) 625
HapII CCGG 1 cut(s) 991
HgaI GACGC 3 cut(s) 74, 900, 974
HhaI GCGC 1 cut(s) 985
Hin1II CATG 6 cut(s) 66, 229, 421, 526, 599, 1032
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HinfI GANTC 4 cut(s) 365, 421, 783, 941
HpaII CCGG 1 cut(s) 991
HphI GGTGA 4 cut(s) 288, 496, 701, 914
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 7 cut(s) 109, 286, 334, 364, 590, 631, 949
Hpy188III TCNNGA 6 cut(s) 33, 35, 260, 523, 537, 921
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 2 cut(s) 916, 1005
HpyAV CCTTC 5 cut(s) 9, 114, 202, 804, 858
HpyCH4III ACNGT 4 cut(s) 23, 257, 545, 766
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 9 cut(s) 66, 116, 179, 273, 385, 395, 530, 561, 599
HpyF10VI GCNNNNNNNGC 6 cut(s) 471, 567, 601, 622, 982, 991
HpyF3I CTNAG 7 cut(s) 6, 339, 399, 587, 698, 946, 958
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 6 cut(s) 66, 229, 421, 526, 599, 1032
HspAI GCGC 1 cut(s) 983
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 262, 583, 691
LmnI GCTCC 5 cut(s) 74, 505, 607, 670, 813
Lsp1109I GCAGC 4 cut(s) 78, 330, 828, 895
LweI GCATC 2 cut(s) 59, 294
MaeI CTAG 3 cut(s) 776, 843, 969
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 264, 585, 693
MboI GATC 3 cut(s) 262, 583, 691
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 5 cut(s) 152, 467, 612, 704, 850
MluCI AATT 3 cut(s) 99, 372, 852
MlyI GAGTC 2 cut(s) 430, 935
MroXI GAANNNNTTC 2 cut(s) 321, 544
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 1 cut(s) 991
MspR9I CCNGG 3 cut(s) 145, 443, 658
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 3 cut(s) 145, 443, 658
MvnI CGCG 1 cut(s) 985
MwoI GCNNNNNNNGC 6 cut(s) 471, 567, 601, 622, 982, 991
NdeI CATATG 1 cut(s) 191
NdeII GATC 3 cut(s) 262, 583, 691
NlaIII CATG 6 cut(s) 66, 229, 421, 526, 599, 1032
NlaIV GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 802
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 2 cut(s) 229, 599
PaeI GCATGC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 225
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 2 cut(s) 321, 544
PfeI GAWTC 2 cut(s) 365, 783
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 6 cut(s) 68, 218, 309, 345, 818, 910
PleI GAGTC 2 cut(s) 429, 935
PpsI GAGTC 2 cut(s) 429, 935
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 143, 441, 656
PspGI CCWGG 3 cut(s) 143, 441, 656
PspN4I GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 802
PspPI GGNCC 2 cut(s) 19, 801
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 2 cut(s) 113, 635
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 6 cut(s) 67, 217, 308, 344, 817, 909
Sau3AI GATC 3 cut(s) 262, 583, 691
Sau96I GGNCC 2 cut(s) 19, 801
SchI GAGTC 2 cut(s) 430, 935
ScrFI CCNGG 3 cut(s) 145, 443, 658
SduI GDGCHC 5 cut(s) 152, 467, 612, 704, 850
SfaNI GCATC 2 cut(s) 59, 294
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 2 cut(s) 19, 801
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 599
Sse9I AATT 3 cut(s) 99, 372, 852
SsiI CCGC 6 cut(s) 217, 244, 308, 410, 570, 614
SspMI CTAG 3 cut(s) 776, 843, 969
StyD4I CCNGG 3 cut(s) 143, 441, 656
TaaI ACNGT 4 cut(s) 23, 257, 545, 766
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 34, 809
TasI AATT 3 cut(s) 99, 372, 852
TauI GCSGC 2 cut(s) 219, 310
TfiI GAWTC 2 cut(s) 365, 783
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 4 cut(s) 66, 343, 816, 908
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 186, 511, 539
TspGWI ACGGA 1 cut(s) 1018
VpaK11BI GGWCC 2 cut(s) 19, 801
XapI RAATTY 1 cut(s) 99
XceI RCATGY 2 cut(s) 229, 599
XhoI CTCGAG 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 321, 544
XspI CTAG 3 cut(s) 776, 843, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.