RLG00000016006

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006141
Physical Location & Seq
Forward (+)
3128089 .. 3129135
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016006

Sequence Viewer

Length: 1047 bp
ATGCCTAAGGAAAGAAGGGACCGTTCTGTGTCTCGAGAGAGGTACAGAGCATCTCCTTATCCATGTAGCTCCAGTCATACAAAGCGTCCGTCACTCAAAATTCGTTCAGAAACTGAGGAAAATGTGAAAGAGTGGGAAGAAGCCAGGTGCCCAGTTTGTTTGGAACATCCACACAATGCAGTTCTGCTCATATGTTCATCTTTTGAGAAGGGGTGCCGCCCTTACATGTGTGACACAAGCTACCGCCATTCAAACTGTCTTGACCAGTTCTGCAAGTCATTTTCAGAAGAAATCTCACCAGAGATGCCTCCAGAAGAAGACATTCAACTTTCAGATACTCAGCTGCTTCCATTTGAAACTTCTGAATCAATAATTACTGATGTGCAAAGTGTTGCAACTGAGGAAGAACCGCCAACCATGATTCCCATATCTTGTGAACACCAGGAACAGCCCAAGCTTGTGTGCCCTCTCTGCCGTGGGGAGGTGAAAGATTGGATTATTGTGGAGCCTGCTCGTTGTTTCATGAATGCAAAATCAAGAAACTGTTCCTGTGAGACGTGCAGTTTTAACGGAACCTATGCAGATCTCAGAAAGCATGCAAGGCTGGAGCACCCGCAAGCACGCCCATCAGAGGCTGACCCAGAGCGACAGCGTTCCTGGAGGAGTTTGGAGCGACAGAGGGACATTGGTGATCTGCTCAGCACACTCCAATCTTCTATGGGGGAGGATAGGGCTGATGACAGCAGCTTGGCAATAGAACAGGATGGGGGGTGGCTAACTGTATTCTTTCTAGTTAGAATCTACCGACCTACGTCTGCGTCCAGTTCGAGGAGCAGCAGTTGGTCTCCTACCACAAGAACTAGGGCCCAAATTAGTATGAGAAGGAGGGCTACTAGACTTTGGGGAGAAAGCTACGAGGGTGAAGCTGCGTCGTCTTCAAGAGAAGCCGACAATGACTCTTCAGATGGTGGCTCAGCTCCTACTAGGAGGCAGAGTGCGCGTCTCCGGCAAAGGCAACGGACAAGCCCAGACAACAATCCGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

349

Amino Acids

39.72

Weight (kDa)

5.93

Isoelectric Point (pI)

76.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 46 - 234 2e-70 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 147, 213
AccII CGCG 1 cut(s) 1000
AciI CCGC 5 cut(s) 217, 244, 410, 614, 1040
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 481, 631, 828
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 4 cut(s) 252, 326, 356, 939
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 143, 441, 656
AluBI AGCT 8 cut(s) 69, 240, 343, 457, 747, 912, 926, 977
AluI AGCT 8 cut(s) 69, 240, 343, 457, 747, 912, 926, 977
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 4 cut(s) 36, 548, 849, 1007
AlwNI CAGNNNCTG 2 cut(s) 113, 635
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 1 cut(s) 864
ApaI GGGCCC 1 cut(s) 868
ApeKI GCWGC 4 cut(s) 343, 744, 834, 926
ApoI RAATTY 1 cut(s) 99
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 2 cut(s) 321, 544
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 3 cut(s) 19, 864, 865
AsuHPI GGTGA 4 cut(s) 288, 496, 701, 932
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 3 cut(s) 152, 467, 868
BanI GGYRCC 2 cut(s) 147, 213
BanII GRGCYC 1 cut(s) 868
BarI GAAGNNNNNNTAC 2 cut(s) 874, 906
BbsI GAAGAC 2 cut(s) 324, 927
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 4 cut(s) 330, 756, 846, 913
BccI CCATC 3 cut(s) 634, 758, 959
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 3 cut(s) 145, 443, 658
BcoDI GTCTC 4 cut(s) 36, 548, 849, 1007
BfaI CTAG 4 cut(s) 791, 861, 894, 984
BglII AGATCT 1 cut(s) 583
BisI GCNGC 5 cut(s) 217, 344, 745, 835, 927
BlpI GCTNAGC 2 cut(s) 698, 973
BlsI GCNGC 5 cut(s) 218, 345, 746, 836, 928
Bme1390I CCNGG 3 cut(s) 145, 443, 658
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 3 cut(s) 19, 864, 865
BmiI GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 866
BmrFI CCNGG 3 cut(s) 145, 443, 658
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 59, 294
BmuI ACTGGG 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 324, 927
BpmI CTGGAG 4 cut(s) 55, 294, 626, 679
Bpu1102I GCTNAGC 2 cut(s) 698, 973
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 1 cut(s) 475
BsaXI ACNNNNNCTCC 4 cut(s) 823, 853, 979, 1009
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 631, 828
Bse1I ACTGG 4 cut(s) 72, 152, 265, 822
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 3 cut(s) 145, 443, 658
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 166, 769
BseLI CCNNNNNNNGG 3 cut(s) 481, 631, 828
BseMII CTCAG 6 cut(s) 105, 353, 390, 601, 712, 987
BseNI ACTGG 4 cut(s) 72, 152, 265, 822
BseRI GAGGAG 2 cut(s) 676, 844
BseSI GKGCMC 3 cut(s) 152, 467, 868
BseXI GCAGC 4 cut(s) 330, 756, 846, 913
BsgI GTGCAG 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 1000
BshFI GGCC 1 cut(s) 866
BshNI GGYRCC 2 cut(s) 147, 213
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 1006
BslFI GGGAC 2 cut(s) 32, 695
BslI CCNNNNNNNGG 3 cut(s) 481, 631, 828
BsmAI GTCTC 4 cut(s) 36, 548, 849, 1007
BsmBI CGTCTC 2 cut(s) 548, 1007
BsmFI GGGAC 2 cut(s) 32, 695
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 866
Bso31I GGTCTC 1 cut(s) 849
BsoBI CYCGRG 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 864
Bsp1286I GDGCHC 4 cut(s) 152, 467, 612, 868
Bsp143I GATC 2 cut(s) 583, 691
Bsp1720I GCTNAGC 2 cut(s) 698, 973
BspACI CCGC 5 cut(s) 217, 244, 410, 614, 1040
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 6 cut(s) 106, 352, 391, 600, 711, 986
BspFNI CGCG 1 cut(s) 1000
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 866
BspT107I GGYRCC 2 cut(s) 147, 213
BspTNI GGTCTC 1 cut(s) 849
BsrI ACTGG 4 cut(s) 72, 152, 265, 822
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 2 cut(s) 583, 691
Bst2UI CCWGG 3 cut(s) 145, 443, 658
Bst4CI ACNGT 4 cut(s) 23, 257, 545, 781
Bst6I CTCTTC 1 cut(s) 964
BstC8I GCNNGC 4 cut(s) 510, 597, 618, 622
BstDEI CTNAG 7 cut(s) 6, 114, 339, 399, 587, 698, 973
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 166, 769
BstFNI CGCG 1 cut(s) 1000
BstHHI GCGC 1 cut(s) 1000
BstKTI GATC 2 cut(s) 586, 694
BstMAI GTCTC 4 cut(s) 36, 548, 849, 1007
BstMBI GATC 2 cut(s) 583, 691
BstMWI GCNNNNNNNGC 4 cut(s) 471, 601, 997, 1006
BstNI CCWGG 3 cut(s) 145, 443, 658
BstNSI RCATGY 2 cut(s) 229, 599
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 143, 441, 656
BstSLI GKGCMC 3 cut(s) 152, 467, 868
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 4 cut(s) 330, 756, 846, 913
BstV2I GAAGAC 2 cut(s) 324, 927
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 166, 769
Cac8I GCNNGC 4 cut(s) 510, 597, 618, 622
CaiI CAGNNNCTG 2 cut(s) 113, 635
CciI TCATGA 1 cut(s) 522
CfoI GCGC 1 cut(s) 1000
Cfr13I GGNCC 3 cut(s) 19, 864, 865
CseI GACGC 4 cut(s) 74, 807, 918, 989
Csp6I GTAC 1 cut(s) 43
CviAII CATG 6 cut(s) 63, 226, 418, 523, 596, 1044
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 7 cut(s) 6, 114, 339, 399, 587, 698, 973
DpnI GATC 2 cut(s) 585, 693
DpnII GATC 2 cut(s) 583, 691
Eam1104I CTCTTC 1 cut(s) 964
EarI CTCTTC 1 cut(s) 964
EciI GGCGGA 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 849
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 945
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 864
EcoRII CCWGG 3 cut(s) 143, 441, 656
EcoT38I GRGCYC 1 cut(s) 868
Esp3I CGTCTC 2 cut(s) 548, 1007
FaeI CATG 6 cut(s) 66, 229, 421, 526, 599, 1047
FaqI GGGAC 2 cut(s) 32, 695
FatI CATG 6 cut(s) 62, 225, 417, 522, 595, 1043
FauI CCCGC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 5 cut(s) 217, 344, 745, 835, 927
FokI GGATG 2 cut(s) 153, 776
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 5 cut(s) 217, 344, 745, 835, 927
FspBI CTAG 4 cut(s) 791, 861, 894, 984
GlaI GCGC 1 cut(s) 999
GluI GCNGC 5 cut(s) 217, 344, 745, 835, 927
GsuI CTGGAG 4 cut(s) 55, 294, 626, 679
HaeIII GGCC 1 cut(s) 866
HapII CCGG 1 cut(s) 1006
HgaI GACGC 4 cut(s) 74, 807, 918, 989
HhaI GCGC 1 cut(s) 1000
Hin1II CATG 6 cut(s) 66, 229, 421, 526, 599, 1047
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 365, 421, 798, 956
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 4 cut(s) 288, 496, 701, 932
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 7 cut(s) 109, 286, 334, 364, 590, 631, 964
Hpy188III TCNNGA 7 cut(s) 33, 35, 260, 311, 523, 537, 939
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 3 cut(s) 9, 202, 876
HpyCH4III ACNGT 4 cut(s) 23, 257, 545, 781
HpyCH4IV ACGT 2 cut(s) 557, 812
HpyCH4V TGCA 8 cut(s) 179, 273, 385, 395, 530, 561, 581, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 471, 601, 997, 1006
HpyF3I CTNAG 7 cut(s) 6, 114, 339, 399, 587, 698, 973
HpySE526I ACGT 2 cut(s) 557, 812
Hsp92II CATG 6 cut(s) 66, 229, 421, 526, 599, 1047
HspAI GCGC 1 cut(s) 998
Kzo9I GATC 2 cut(s) 583, 691
LmnI GCTCC 6 cut(s) 74, 505, 607, 670, 831, 982
Lsp1109I GCAGC 4 cut(s) 330, 756, 846, 913
LweI GCATC 2 cut(s) 59, 294
MaeI CTAG 4 cut(s) 791, 861, 894, 984
MaeII ACGT 2 cut(s) 557, 812
MaeIII GTNAC 2 cut(s) 90, 230
MalI GATC 2 cut(s) 585, 693
MboI GATC 2 cut(s) 583, 691
MboII GAAGA 8 cut(s) 149, 299, 326, 329, 416, 705, 927, 951
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 4 cut(s) 152, 467, 612, 868
MluCI AATT 3 cut(s) 99, 372, 870
MlyI GAGTC 1 cut(s) 950
MroXI GAANNNNTTC 2 cut(s) 321, 544
MseI TTAA 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 3 cut(s) 145, 443, 658
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 3 cut(s) 145, 443, 658
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 4 cut(s) 471, 601, 997, 1006
NdeI CATATG 1 cut(s) 191
NdeII GATC 2 cut(s) 583, 691
NlaIII CATG 6 cut(s) 66, 229, 421, 526, 599, 1047
NlaIV GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 866
NmuCI GTSAC 2 cut(s) 90, 230
NspI RCATGY 2 cut(s) 229, 599
PaeI GCATGC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 225
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 2 cut(s) 321, 544
PfeI GAWTC 3 cut(s) 365, 421, 798
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 5 cut(s) 218, 345, 746, 836, 928
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
PscI ACATGT 1 cut(s) 225
PshAI GACNNNNGTC 1 cut(s) 811
Psp6I CCWGG 3 cut(s) 143, 441, 656
PspGI CCWGG 3 cut(s) 143, 441, 656
PspN4I GGNNCC 6 cut(s) 20, 149, 215, 507, 574, 866
PspOMI GGGCCC 1 cut(s) 864
PspPI GGNCC 3 cut(s) 19, 864, 865
PstNI CAGNNNCTG 2 cut(s) 113, 635
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 5 cut(s) 217, 344, 745, 835, 927
Sau3AI GATC 2 cut(s) 583, 691
Sau96I GGNCC 3 cut(s) 19, 864, 865
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 3 cut(s) 145, 443, 658
SduI GDGCHC 4 cut(s) 152, 467, 612, 868
SfaNI GCATC 2 cut(s) 59, 294
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 599
Sse9I AATT 3 cut(s) 99, 372, 870
SsiI CCGC 5 cut(s) 217, 244, 410, 614, 1040
SspMI CTAG 4 cut(s) 791, 861, 894, 984
StyD4I CCNGG 3 cut(s) 143, 441, 656
TaaI ACNGT 4 cut(s) 23, 257, 545, 781
TaiI ACGT 2 cut(s) 560, 815
TaqI TCGA 2 cut(s) 34, 827
TasI AATT 3 cut(s) 99, 372, 870
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 3 cut(s) 365, 421, 798
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TseFI GTSAC 2 cut(s) 90, 230
TseI GCWGC 4 cut(s) 343, 744, 834, 926
Tsp45I GTSAC 2 cut(s) 90, 230
TspDTI ATGAA 3 cut(s) 186, 511, 539
TspGWI ACGGA 3 cut(s) 78, 585, 1033
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 99
XceI RCATGY 2 cut(s) 229, 599
XhoI CTCGAG 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 321, 544
XspI CTAG 4 cut(s) 791, 861, 894, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.