Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027405.1

Orthogroup ID

OG0006141

Physical Location & Seq

Genomic Coordinates Reverse (-)

3577 .. 4623

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027405.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgcctaaggaaagaagggaccgttctgtgtctcgagagaggtacagagcatctccttatccatgcagctccagtcatacaaagcgtccctcactcaaaattccttcagaaactgcagaaaatgtgaaagagtgggaagaagccaggtgcccagtttgtttggaacatccacacaatgcagttctgctcatatgttcatcttttgagaaggggtgccgcccttacatgtgtgacacaagctaccgccattcaaactgtcttgatcagttctgcaagtcattttcagaagaaatctcaccagagatgccgccagaagaagacattcagctttcagatactcagctgcttccatttgaaacttctgaatcaataattactgatgtgcaaagtgttgtaactgaggaagaaccgccaaccatgattcccatatcttgtgaacaccaggaacagcccaagcttgtgtgccctctctgccgtggggaggtgaaagattggattattgtggagcctgctcgttgtttcatgaatgcaaaatcaagaaactgttcttgtgagacgtgcagttttagcggaacctatacagatctcagaaagcatgcaaggctggagcacccgcaagcacgaccatcagaggctgacccagagcgacagcgttcctggaggagtttggagcgacagagggacattggtgatctgctgagcacactccaatcttctatgggagaggatagggctgatgacagcagcttggcagtagaggaggggggatggctaactgtattcttcctagttagaatctaccgacctacgtctgggtccagttcgaggagcagcagttggtctcctaccacaagaactagagcacaaattagtatgagaaggagggctaccagacattggggagaaagctacgagggtgaagctgcgtcgtcttcaagaggagaagccgacaatgactcctcagatggtggctcagcccctactcggaggcagagtgcgcgtctccggcaaaggcgacggacaagcccagacaacaaccagccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

348

Amino Acids

39.63

Weight (kDa)

6.14

Isoelectric Point (pI)

74.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25910
fragaria_vesca	FvH4_1g03830
malus_domestica	MD02G1036700.v1.1 MD15G1176800.v1.1
prunus_persica	Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1 Prupe.7G238700_v2.0.a1
pyrus_communis	pycom02g03020 pycom15g15830
rosa_chinensis	RchiOBHm_Chr2g0089221
rosa_laevigata	RLG00000016006
rosa_multiflora	Rmu_co8311577.1_g000001 Rmu_sc0008322.1_g000022 Rmu_sc0027405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152130
rosa_rugosa	Rorug01G0488500 Rorug01G0488600
rosa_samantha	Rh2AG044300 Rh2BG042900 Rh2CG044400 Rh2DG043200
rosa_wichuraiana	Rw2G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	147, 213
AccB7I	CCANNNNNTGG	1 cut(s)	897
AccII	CGCG	1 cut(s)	1000
AciI	CCGC	6 cut(s)	217, 244, 308, 410, 570, 614
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	5 cut(s)	481, 812, 825, 897, 984
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	252, 356, 936
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	3 cut(s)	143, 441, 656
AluBI	AGCT	8 cut(s)	69, 240, 328, 343, 457, 747, 909, 923
AluI	AGCT	8 cut(s)	69, 240, 328, 343, 457, 747, 909, 923
Alw21I	GWGCWC	3 cut(s)	612, 704, 865
Alw26I	GTCTC	4 cut(s)	36, 548, 846, 1007
AlwNI	CAGNNNCTG	2 cut(s)	113, 635
Ama87I	CYCGRG	1 cut(s)	33
ApeKI	GCWGC	5 cut(s)	66, 343, 744, 831, 923
ApoI	RAATTY	1 cut(s)	99
Asp700I	GAANNNNTTC	2 cut(s)	321, 544
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	2 cut(s)	19, 816
AsuHPI	GGTGA	4 cut(s)	288, 496, 701, 929
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	2 cut(s)	19, 816
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	2 cut(s)	152, 467
BanI	GGYRCC	2 cut(s)	147, 213
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbsI	GAAGAC	2 cut(s)	324, 924
Bbv12I	GWGCWC	3 cut(s)	612, 704, 865
BbvI	GCAGC	5 cut(s)	78, 330, 756, 843, 910
BccI	CCATC	3 cut(s)	634, 762, 959
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	145, 443, 658
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	4 cut(s)	36, 548, 846, 1007
BfaI	CTAG	2 cut(s)	788, 858
BfmI	CTRYAG	1 cut(s)	114
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	7 cut(s)	67, 217, 308, 344, 745, 832, 924
BlpI	GCTNAGC	2 cut(s)	698, 973
BlsI	GCNGC	7 cut(s)	68, 218, 309, 345, 746, 833, 925
Bme1390I	CCNGG	3 cut(s)	145, 443, 658
Bme18I	GGWCC	2 cut(s)	19, 816
BmeT110I	CYCGRG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	19, 816
BmiI	GGNNCC	6 cut(s)	20, 149, 215, 507, 574, 817
BmrFI	CCNGG	3 cut(s)	145, 443, 658
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	59, 294
BmuI	ACTGGG	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	808
BpiI	GAAGAC	2 cut(s)	324, 924
BpmI	CTGGAG	3 cut(s)	55, 626, 679
Bpu1102I	GCTNAGC	2 cut(s)	698, 973
BsaI	GGTCTC	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	475
BsaXI	ACNNNNNCTCC	6 cut(s)	820, 850, 941, 971, 979, 1009
Bsc4I	CCNNNNNNNGG	5 cut(s)	481, 812, 825, 897, 984
Bse1I	ACTGG	3 cut(s)	72, 152, 819
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	3 cut(s)	145, 443, 658
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	166, 773
BseLI	CCNNNNNNNGG	5 cut(s)	481, 812, 825, 897, 984
BseMII	CTCAG	6 cut(s)	353, 390, 601, 689, 975, 987
BseNI	ACTGG	3 cut(s)	72, 152, 819
BseRI	GAGGAG	5 cut(s)	676, 773, 841, 949, 954
BseSI	GKGCMC	2 cut(s)	152, 467
BseXI	GCAGC	5 cut(s)	78, 330, 756, 843, 910
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	1000
BshNI	GGYRCC	2 cut(s)	147, 213
BsiHKAI	GWGCWC	3 cut(s)	612, 704, 865
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	1006
BslFI	GGGAC	3 cut(s)	32, 72, 695
BslI	CCNNNNNNNGG	5 cut(s)	481, 812, 825, 897, 984
BsmAI	GTCTC	4 cut(s)	36, 548, 846, 1007
BsmBI	CGTCTC	2 cut(s)	548, 1007
BsmFI	GGGAC	3 cut(s)	32, 72, 695
BsmI	GAATGC	1 cut(s)	532
Bso31I	GGTCTC	1 cut(s)	846
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	5 cut(s)	152, 467, 612, 704, 865
Bsp143I	GATC	3 cut(s)	262, 583, 691
Bsp1720I	GCTNAGC	2 cut(s)	698, 973
BspACI	CCGC	6 cut(s)	217, 244, 308, 410, 570, 614
BspCNI	CTCAG	6 cut(s)	352, 391, 600, 690, 974, 986
BspFNI	CGCG	1 cut(s)	1000
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	6 cut(s)	20, 149, 215, 507, 574, 817
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	147, 213
BspTNI	GGTCTC	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	72, 152, 819
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	262, 583, 691
Bst2UI	CCWGG	3 cut(s)	145, 443, 658
Bst4CI	ACNGT	4 cut(s)	23, 257, 545, 778
BstC8I	GCNNGC	3 cut(s)	510, 597, 618
BstDEI	CTNAG	7 cut(s)	6, 339, 399, 587, 698, 961, 973
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	166, 773
BstFNI	CGCG	1 cut(s)	1000
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	3 cut(s)	265, 586, 694
BstMAI	GTCTC	4 cut(s)	36, 548, 846, 1007
BstMBI	GATC	3 cut(s)	262, 583, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	471, 567, 601, 997, 1006
BstNI	CCWGG	3 cut(s)	145, 443, 658
BstNSI	RCATGY	2 cut(s)	229, 599
BstPAI	GACNNNNGTC	1 cut(s)	808
BstSCI	CCNGG	3 cut(s)	143, 441, 656
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	2 cut(s)	152, 467
BstUI	CGCG	1 cut(s)	1000
BstV1I	GCAGC	5 cut(s)	78, 330, 756, 843, 910
BstV2I	GAAGAC	2 cut(s)	324, 924
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	475
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	166, 773
Cac8I	GCNNGC	3 cut(s)	510, 597, 618
CaiI	CAGNNNCTG	2 cut(s)	113, 635
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	2 cut(s)	19, 816
CseI	GACGC	3 cut(s)	74, 915, 989
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	6 cut(s)	63, 226, 418, 523, 596, 1044
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	7 cut(s)	6, 339, 399, 587, 698, 961, 973
DpnI	GATC	3 cut(s)	264, 585, 693
DpnII	GATC	3 cut(s)	262, 583, 691
Eco31I	GGTCTC	1 cut(s)	846
Eco47I	GGWCC	2 cut(s)	19, 816
Eco57I	CTGAAG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	3 cut(s)	143, 441, 656
Esp3I	CGTCTC	2 cut(s)	548, 1007
FaeI	CATG	6 cut(s)	66, 229, 421, 526, 599, 1047
FaqI	GGGAC	3 cut(s)	32, 72, 695
FatI	CATG	6 cut(s)	62, 225, 417, 522, 595, 1043
FauI	CCCGC	1 cut(s)	621
FauNDI	CATATG	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	7 cut(s)	67, 217, 308, 344, 745, 832, 924
FokI	GGATG	2 cut(s)	153, 780
Fsp4HI	GCNGC	7 cut(s)	67, 217, 308, 344, 745, 832, 924
FspBI	CTAG	2 cut(s)	788, 858
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	7 cut(s)	67, 217, 308, 344, 745, 832, 924
GsuI	CTGGAG	3 cut(s)	55, 626, 679
HapII	CCGG	1 cut(s)	1006
HgaI	GACGC	3 cut(s)	74, 915, 989
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	6 cut(s)	66, 229, 421, 526, 599, 1047
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	4 cut(s)	365, 421, 795, 956
HpaII	CCGG	1 cut(s)	1006
HphI	GGTGA	4 cut(s)	288, 496, 701, 929
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	8 cut(s)	109, 286, 334, 364, 590, 631, 964, 987
Hpy188III	TCNNGA	6 cut(s)	33, 35, 260, 523, 537, 936
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	2 cut(s)	931, 1020
HpyAV	CCTTC	4 cut(s)	9, 114, 202, 873
HpyCH4III	ACNGT	4 cut(s)	23, 257, 545, 778
HpyCH4IV	ACGT	2 cut(s)	557, 809
HpyCH4V	TGCA	8 cut(s)	66, 116, 179, 273, 385, 530, 561, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	471, 567, 601, 997, 1006
HpyF3I	CTNAG	7 cut(s)	6, 339, 399, 587, 698, 961, 973
HpySE526I	ACGT	2 cut(s)	557, 809
Hsp92II	CATG	6 cut(s)	66, 229, 421, 526, 599, 1047
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	262, 583, 691
LmnI	GCTCC	5 cut(s)	74, 505, 607, 670, 828
Lsp1109I	GCAGC	5 cut(s)	78, 330, 756, 843, 910
LweI	GCATC	2 cut(s)	59, 294
MaeI	CTAG	2 cut(s)	788, 858
MaeII	ACGT	2 cut(s)	557, 809
MaeIII	GTNAC	2 cut(s)	230, 394
MalI	GATC	3 cut(s)	264, 585, 693
MboI	GATC	3 cut(s)	262, 583, 691
MboII	GAAGA	8 cut(s)	149, 299, 326, 329, 416, 705, 775, 924
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	5 cut(s)	152, 467, 612, 704, 865
MluCI	AATT	3 cut(s)	99, 372, 867
MlyI	GAGTC	1 cut(s)	950
MroXI	GAANNNNTTC	2 cut(s)	321, 544
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	1006
MspR9I	CCNGG	3 cut(s)	145, 443, 658
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	3 cut(s)	145, 443, 658
MvnI	CGCG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	5 cut(s)	471, 567, 601, 997, 1006
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	3 cut(s)	262, 583, 691
NlaIII	CATG	6 cut(s)	66, 229, 421, 526, 599, 1047
NlaIV	GGNNCC	6 cut(s)	20, 149, 215, 507, 574, 817
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	229, 599
PaeI	GCATGC	1 cut(s)	599
PaeR7I	CTCGAG	1 cut(s)	33
PagI	TCATGA	1 cut(s)	522
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	2 cut(s)	321, 544
PfeI	GAWTC	3 cut(s)	365, 421, 795
PflMI	CCANNNNNTGG	1 cut(s)	897
PfoI	TCCNGGA	1 cut(s)	656
PkrI	GCNGC	7 cut(s)	68, 218, 309, 345, 746, 833, 925
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
PscI	ACATGT	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	808
Psp6I	CCWGG	3 cut(s)	143, 441, 656
PspGI	CCWGG	3 cut(s)	143, 441, 656
PspN4I	GGNNCC	6 cut(s)	20, 149, 215, 507, 574, 817
PspPI	GGNCC	2 cut(s)	19, 816
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	113, 635
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	7 cut(s)	67, 217, 308, 344, 745, 832, 924
Sau3AI	GATC	3 cut(s)	262, 583, 691
Sau96I	GGNCC	2 cut(s)	19, 816
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	3 cut(s)	145, 443, 658
SduI	GDGCHC	5 cut(s)	152, 467, 612, 704, 865
SfaNI	GCATC	2 cut(s)	59, 294
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	2 cut(s)	19, 816
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	3 cut(s)	99, 372, 867
SsiI	CCGC	6 cut(s)	217, 244, 308, 410, 570, 614
SspMI	CTAG	2 cut(s)	788, 858
StyD4I	CCNGG	3 cut(s)	143, 441, 656
TaaI	ACNGT	4 cut(s)	23, 257, 545, 778
TaiI	ACGT	2 cut(s)	560, 812
TaqI	TCGA	2 cut(s)	34, 824
TasI	AATT	3 cut(s)	99, 372, 867
TauI	GCSGC	2 cut(s)	219, 310
TfiI	GAWTC	3 cut(s)	365, 421, 795
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	5 cut(s)	66, 343, 744, 831, 923
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	186, 511, 539
TspGWI	ACGGA	1 cut(s)	1033
Van91I	CCANNNNNTGG	1 cut(s)	897
VpaK11BI	GGWCC	2 cut(s)	19, 816
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	2 cut(s)	229, 599
XhoI	CTCGAG	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	321, 544
XspI	CTAG	2 cut(s)	788, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.