FvH4_1g03930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012355
Physical Location & Seq
Forward (+)
2089375 .. 2092506
3132 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03930.t1

Sequence Viewer

Length: 300 bp
ATGGCCACCTGGCCCTCCTCTTCCGACCCTTCTAATCAGCAGCCTGAGGCAATAAGGAAGAGAAATAAGTCCGATCAAATTAAGTTCCTGATTCCTCTCATCTACGCCCCCGTGCTTCCCCTCATTCGGATCACGCTGCGGAAACAACCGGTTCTAAGGGACCGTCTGTTTATTGCTGTGTTGGCTGGGGCATTTGCTCATGGCACTTATTTGGTGTATCCTTTTGTTGAGATATCGAATTATTGTGATTGTTATAATGTTATACTTGGTGACATTCTGCTAAGAAATTGCTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

9.15

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68680
fragaria_vesca FvH4_1g03930 FvH4_1g03930
malus_domestica MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica Prupe.7G237700_v2.0.a1
pyrus_communis pycom02g03080 pycom15g15920
rosa_chinensis RchiOBHm_Chr2g0089401
rosa_multiflora Rmu_sc0000197.1_g000021
rosa_roxburghii Rroxscaffold_2G00151990
rosa_rugosa Rorug02G0000200
rosa_samantha Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 148
AjnI CCWGG 1 cut(s) 8
AlwI GGATC 1 cut(s) 137
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 2 cut(s) 40, 136
AsiGI ACCGGT 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 12, 160
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 45
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 52, 123
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 228
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 2 cut(s) 41, 137
BlsI GCNGC 2 cut(s) 42, 138
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 12, 160
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 148
Bse21I CCTNAGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 52, 123
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 2 cut(s) 5, 13
BshTI ACCGGT 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 5, 13
Bsp143I GATC 2 cut(s) 73, 129
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 5, 13
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 148
BssMI GATC 2 cut(s) 73, 129
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 2 cut(s) 25, 53
BstDEI CTNAG 3 cut(s) 45, 155, 281
BstKTI GATC 2 cut(s) 76, 132
BstMBI GATC 2 cut(s) 73, 129
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 52, 123
Bsu36I CCTNAGG 1 cut(s) 45
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 5, 13
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 12, 160
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 5, 13, 43, 185
CviKI_1 RGCY 4 cut(s) 5, 13, 43, 185
DdeI CTNAG 3 cut(s) 45, 155, 281
DpnI GATC 2 cut(s) 75, 131
DpnII GATC 2 cut(s) 73, 129
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 25, 53
EarI CTCTTC 2 cut(s) 25, 53
Eco32I GATATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 234
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 201, 255, 263, 294
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 41, 137
Fsp4HI GCNGC 2 cut(s) 41, 137
GluI GCNGC 2 cut(s) 41, 137
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 25, 73, 129
Hpy188III TCNNGA 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 45, 155, 281
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 2 cut(s) 73, 129
LpnPI CCDG 5 cut(s) 22, 57, 101, 162, 171
Lsp1109I GCAGC 2 cut(s) 52, 123
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 75, 131
MboI GATC 2 cut(s) 73, 129
MboII GAAGA 2 cut(s) 12, 70
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 78, 238, 286
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 25, 28, 40, 105, 131
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 73, 129
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 2 cut(s) 42, 138
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 12, 160
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 41, 137
Sau3AI GATC 2 cut(s) 73, 129
Sau96I GGNCC 2 cut(s) 12, 160
ScrFI CCNGG 1 cut(s) 10
SetI ASST 1 cut(s) 11
SinI GGWCC 1 cut(s) 160
Sse9I AATT 3 cut(s) 78, 238, 286
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 236
TasI AATT 3 cut(s) 78, 238, 286
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 40, 136
Tsp45I GTSAC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.