pycom02g03080

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
1998065 .. 1999358
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03080.3

Sequence Viewer

Length: 249 bp
ATGGCCTCCCGGCCCGCCTCCTCCGATCGTTCTAATCAGGAGGCTGCTGCTGCAATCCGAAGGAGACAACCAGGACATCAAATCAAGTTCTTGATTCCTCTTATATATGCCCCTGTTCTTCCCCTCATTCGACTCTCATTGCGGAAGAATCCGGTTGTGCGGGACCGCTTGTTTACTGCTGTGCTGGTTGGAGCATTTGCTCATGGCTTTTATTTGGTAACTGATCTGTATGATGCTGAGAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

10.55

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012355)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 142, 160, 166
AjnI CCWGG 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 3 cut(s) 44, 47, 50
AspS9I GGNCC 2 cut(s) 12, 163
AsuC2I CCSGG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 31, 34, 37
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 58
BisI GCNGC 3 cut(s) 45, 48, 51
BlsI GCNGC 3 cut(s) 46, 49, 52
Bme1390I CCNGG 2 cut(s) 10, 72
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 12, 163
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 10, 72
BmsI GCATC 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 3 cut(s) 31, 34, 37
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 13
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 2 cut(s) 10, 152
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 5, 13
Bsp143I GATC 2 cut(s) 25, 223
BspACI CCGC 4 cut(s) 15, 142, 160, 166
BspANI GGCC 2 cut(s) 5, 13
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 137
BssMI GATC 2 cut(s) 25, 223
Bst2UI CCWGG 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 2 cut(s) 28, 226
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 25, 223
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 8, 70
BstV1I GCAGC 3 cut(s) 31, 34, 37
BsuRI GGCC 2 cut(s) 5, 13
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 12, 163
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 5, 13, 44, 207
CviKI_1 RGCY 4 cut(s) 5, 13, 44, 207
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 27, 225
DpnII GATC 2 cut(s) 25, 223
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 104, 106, 108, 204, 231
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 202
FauI CCCGC 2 cut(s) 22, 153
Fnu4HI GCNGC 3 cut(s) 45, 48, 51
Fsp4HI GCNGC 3 cut(s) 45, 48, 51
GluI GCNGC 3 cut(s) 45, 48, 51
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 2 cut(s) 10, 152
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 94, 132, 148
HpaII CCGG 2 cut(s) 10, 152
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 25, 59
Hpy188III TCNNGA 2 cut(s) 38, 91
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 25, 223
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 23, 23, 57, 84, 126, 165, 170
Lsp1109I GCAGC 3 cut(s) 31, 34, 37
LweI GCATC 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 27, 225
MboI GATC 2 cut(s) 25, 223
MboII GAAGA 2 cut(s) 110, 157
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 6 cut(s) 16, 28, 31, 34, 108, 134
MspI CCGG 2 cut(s) 10, 152
MspR9I CCNGG 2 cut(s) 10, 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 10
NdeII GATC 2 cut(s) 25, 223
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 94, 148
PkrI GCNGC 3 cut(s) 46, 49, 52
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 12, 163
PvuI CGATCG 1 cut(s) 28
SatI GCNGC 3 cut(s) 45, 48, 51
Sau3AI GATC 2 cut(s) 25, 223
Sau96I GGNCC 2 cut(s) 12, 163
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 2 cut(s) 10, 72
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 163
SsiI CCGC 4 cut(s) 15, 142, 160, 166
StyD4I CCNGG 2 cut(s) 8, 70
TaqI TCGA 1 cut(s) 130
TfiI GAWTC 2 cut(s) 94, 148
TseI GCWGC 3 cut(s) 44, 47, 50
VpaK11BI GGWCC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.