Rh2BG044100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012355
Physical Location & Seq
Forward (+)
3129005 .. 3131452
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG044100.1

Sequence Viewer

Length: 276 bp
ATGGCCACCTGGCCCTCCTCATCCGATCCTTCTAATCAGGAAGCTGTTGCAATAAGGAAGAGAAACAAGTCTGATCAAATTAAGTTCTTGATTCCTCTCATCTACGCCCCTGTTCTTCCCCTCATTCGACTCACACTGCGGAAGAATCCGGTTGTGCGGGACCGTTTGTTTACTGCTGTGTTGGTTGGAGCATTTGCTCATGGCTCTTATTTGGTGTATCCTTTTATTGATATCGAATTCCGTTATGATTGTTACTCTGGTATATGCTGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.35

Weight (kDa)

9.04

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68680
fragaria_vesca FvH4_1g03930 FvH4_1g03930
malus_domestica MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica Prupe.7G237700_v2.0.a1
pyrus_communis pycom02g03080 pycom15g15920
rosa_chinensis RchiOBHm_Chr2g0089401
rosa_multiflora Rmu_sc0000197.1_g000021
rosa_roxburghii Rroxscaffold_2G00151990
rosa_rugosa Rorug02G0000200
rosa_samantha Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 139, 157
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 236
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AlwI GGATC 1 cut(s) 20
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 2 cut(s) 267, 270
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 12, 160
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 254, 257
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 73
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 2 cut(s) 268, 271
BlsI GCNGC 2 cut(s) 269, 272
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 12, 160
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 148
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 254, 257
BshFI GGCC 2 cut(s) 5, 13
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 5, 13
Bsp143I GATC 2 cut(s) 25, 73
BspACI CCGC 2 cut(s) 139, 157
BspANI GGCC 2 cut(s) 5, 13
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 20
BssMI GATC 2 cut(s) 25, 73
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 2 cut(s) 28, 76
BstMBI GATC 2 cut(s) 25, 73
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 254, 257
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 5, 13
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 12, 160
CviAII CATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 5, 13, 44, 204
CviKI_1 RGCY 4 cut(s) 5, 13, 44, 204
DpnI GATC 2 cut(s) 27, 75
DpnII GATC 2 cut(s) 25, 73
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 232
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 201, 246, 263, 265
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 150
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 268, 271
FokI GGATG 1 cut(s) 7
Fsp4HI GCNGC 2 cut(s) 268, 271
GluI GCNGC 2 cut(s) 268, 271
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 203
HinfI GANTC 3 cut(s) 91, 129, 145
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 25, 73
Hpy188III TCNNGA 2 cut(s) 38, 88
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 50
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 25, 73
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 22, 23, 123, 162, 243
Lsp1109I GCAGC 2 cut(s) 254, 257
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 27, 75
MboI GATC 2 cut(s) 25, 73
MboII GAAGA 3 cut(s) 70, 107, 154
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 78, 236
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 25, 28, 105, 131
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
NdeII GATC 2 cut(s) 25, 73
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 91, 145
PkrI GCNGC 2 cut(s) 269, 272
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 12, 160
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 268, 271
Sau3AI GATC 2 cut(s) 25, 73
Sau96I GGNCC 2 cut(s) 12, 160
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 10
SetI ASST 2 cut(s) 11, 46
SinI GGWCC 1 cut(s) 160
Sse9I AATT 2 cut(s) 78, 236
SsiI CCGC 2 cut(s) 139, 157
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 127, 234
TasI AATT 2 cut(s) 78, 236
TfiI GAWTC 2 cut(s) 91, 145
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 141
TseI GCWGC 2 cut(s) 267, 270
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.