MD02G1037600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012355
Physical Location & Seq
Forward (+)
2845302 .. 2847142
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1037600.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGCCTCCTGGCCCGCCTCCTCCGATCGCTCTAATCAGGAGGGTGGTGCTGCAATCCGAAAGAGACAACCAGGACATCAAGTCAAGTTCTTGATTCCTCTTATATATGCCCCTGTTCTTCCCCTCATTCGACTCTCATTGCGGAAGAATCCGGTTGTGCGGGACCGCTTGTTTACTGCTGTGCTGGTTGGAGCATTTGCTCATGGCTTTTATTTGGTGTATCCTTTTTTGTACTTTAGTATTTTGGGGATTTATAGATCATATATTGAATGGATAGATTGGTGCTATGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

9.77

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68680
fragaria_vesca FvH4_1g03930 FvH4_1g03930
malus_domestica MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica Prupe.7G237700_v2.0.a1
pyrus_communis pycom02g03080 pycom15g15920
rosa_chinensis RchiOBHm_Chr2g0089401
rosa_multiflora Rmu_sc0000197.1_g000021
rosa_roxburghii Rroxscaffold_2G00151990
rosa_rugosa Rorug02G0000200
rosa_samantha Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 142, 160, 166
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 269
AhdI GACNNNNNGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 8, 70
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 12, 163
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 10, 72
BciVI GTATCC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 10, 72
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 12, 163
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 10, 72
BsaWI WCCGGW 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 2 cut(s) 10, 72
BseMI GCAATG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 13
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 5, 13
Bsp143I GATC 2 cut(s) 25, 257
BspACI CCGC 4 cut(s) 15, 142, 160, 166
BspANI GGCC 2 cut(s) 5, 13
BspLI GGNNCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 137
BssMI GATC 2 cut(s) 25, 257
Bst2UI CCWGG 2 cut(s) 10, 72
BstC8I GCNNGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 28, 260
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 25, 257
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 2 cut(s) 10, 72
BstSCI CCNGG 2 cut(s) 8, 70
BstV1I GCAGC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 5, 13
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 12, 163
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 203
CviJI RGCY 3 cut(s) 5, 13, 207
CviKI_1 RGCY 3 cut(s) 5, 13, 207
CviQI GTAC 1 cut(s) 232
DpnI GATC 2 cut(s) 27, 259
DpnII GATC 2 cut(s) 25, 257
DriI GACNNNNNGTC 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 8, 70
FaeI CATG 1 cut(s) 206
FaiI YATR 8 cut(s) 104, 106, 108, 204, 255, 262, 264, 288
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 202
FauI CCCGC 2 cut(s) 22, 153
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 1 cut(s) 152
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 94, 132, 148
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 25, 59
Hpy188III TCNNGA 2 cut(s) 38, 91
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 53
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 25, 257
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 22, 23, 57, 84, 126, 165, 170
Lsp1109I GCAGC 1 cut(s) 37
MalI GATC 2 cut(s) 27, 259
MboI GATC 2 cut(s) 25, 257
MboII GAAGA 2 cut(s) 110, 157
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 6 cut(s) 16, 28, 31, 34, 108, 134
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 10, 72
MvaI CCWGG 2 cut(s) 10, 72
NdeII GATC 2 cut(s) 25, 257
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 94, 148
PkrI GCNGC 1 cut(s) 52
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 8, 70
PspGI CCWGG 2 cut(s) 8, 70
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 12, 163
PvuI CGATCG 1 cut(s) 28
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 25, 257
Sau96I GGNCC 2 cut(s) 12, 163
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 2 cut(s) 10, 72
SinI GGWCC 1 cut(s) 163
SsiI CCGC 4 cut(s) 15, 142, 160, 166
StyD4I CCNGG 2 cut(s) 8, 70
TaqI TCGA 1 cut(s) 130
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 94, 148
TseI GCWGC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.