Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Forward (+)

45567 .. 51264

Gene Structure 5698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0000200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGAACCACAACGCGAAATTGGTCCCTAACGGTGGACTCAAACCTAACCCCAGCAACAACCTTAGCGAACAAGAAGAAGAGAACCCTACTCTTAATCGTTGCGGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGTAACTACGCAATTGGCGGAGCCTCCTTCACCTAATGCCCCGCAGTCCTCAAGAACTCCCTTCACTAATCTCAGTCAGGTCGATGCTGACCTTGCTCTTGCTCGAACTCTCCAAGAACAGGAAAGGGCATACATGATGCTGCGGATGAACAATGAAGGGAGTGATTATGGCAGTTGGGAAGCTGGAAGTTATGTGCATGATGATGAGGATGATTTTCATGATGATACTGACGGAAATGATGATGAGGAGCAATATGATGGGACTGATGCTGACAATGATGAAGAAGATGCATTTGATGTGCACGCTCATGATGACGCTGGAGACGATCATAACCCCAGTGTCGTATATGACCCTGCTGTTTTTTCAAGTGATGAGGCATATGCAAGAGCCCTGCAGGATGCTGAAGATAGAGATATGGCAGCTAGACTGATGGCCCTTGCAATTGATGACCGTGAAGCTGAGGACACTGAGGATCAGGGAGGTAACTCTCAGGATGCATGGGAGGAGGTTGACCCAGATGAGCTTTCGTATGAGGAGTTACTTGCATTGGGTGAAGTTGTTGGAACAGAGAGCAGAGGGCTTTCTGCTGATACAATTGCTTCATTGCCTTCAGTAAGCTACAAGATGGGGAGCGATCAGAATGGAAGCAATGAGTCGTGTGTCATTTGTCGGTTAGATTATGAGGATGGTGAAAACTTGACAGTACTTTCTTGCAAACACTCTTATCATTCTGATTGCATAAATAATTGGTTGACAATAAACAAGGTCTGCCCAGTTTGCAGTGCTGAAGTCTCCACATCTGGAAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0031503 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

316

Amino Acids

34.81

Weight (kDa)

4.05

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	261 - 306	1.1e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	265 - 306	5.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	266 - 306	3.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	266 - 293	4.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	266 - 306	5.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	266 - 307	1.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	105, 155, 179, 280
AclWI	GGATC	1 cut(s)	618
AcuI	CTGAAG	3 cut(s)	561, 732, 945
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	2 cut(s)	35, 256
AgsI	TTSAA	1 cut(s)	504
AluBI	AGCT	6 cut(s)	320, 560, 596, 661, 756, 948
AluI	AGCT	6 cut(s)	320, 560, 596, 661, 756, 948
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	453, 934
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	1 cut(s)	570
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	277, 557
AspS9I	GGNCC	2 cut(s)	25, 571
AsuHPI	GGTGA	3 cut(s)	159, 701, 839
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	264, 569
BccI	CCATC	4 cut(s)	389, 562, 757, 818
BcoDI	GTCTC	2 cut(s)	453, 934
BfaI	CTAG	2 cut(s)	561, 949
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	278, 558
BlsI	GCNGC	2 cut(s)	279, 559
BmcAI	AGTACT	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 571
BmiI	GGNNCC	2 cut(s)	27, 159
BmrI	ACTGGG	2 cut(s)	468, 905
BmsI	GCATC	6 cut(s)	211, 264, 394, 415, 526, 622
BmuI	ACTGGG	2 cut(s)	468, 905
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	2 cut(s)	65, 597
BpuEI	CTTGAG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 256
Bse1I	ACTGG	2 cut(s)	474, 911
Bse3DI	GCAATG	2 cut(s)	740, 793
BseGI	GGATG	5 cut(s)	288, 352, 541, 637, 829
BseLI	CCNNNNNNNGG	2 cut(s)	35, 256
BseMI	GCAATG	2 cut(s)	740, 793
BseMII	CTCAG	4 cut(s)	223, 588, 597, 641
BseNI	ACTGG	2 cut(s)	474, 911
BseRI	GAGGAG	3 cut(s)	398, 656, 686
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	264, 569
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	11, 412
BslI	CCNNNNNNNGG	2 cut(s)	35, 256
BsmAI	GTCTC	2 cut(s)	453, 934
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	11, 412
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	441, 529
Bsp143I	GATC	3 cut(s)	463, 610, 772
BspACI	CCGC	4 cut(s)	105, 155, 179, 280
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	4 cut(s)	222, 589, 598, 640
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	355, 445
BspLI	GGNNCC	2 cut(s)	27, 159
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	618
BsrDI	GCAATG	2 cut(s)	740, 793
BsrI	ACTGG	2 cut(s)	474, 911
BssMI	GATC	3 cut(s)	463, 610, 772
Bst4CI	ACNGT	3 cut(s)	35, 590, 841
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	5 cut(s)	65, 209, 597, 606, 627
BstF5I	GGATG	5 cut(s)	288, 352, 541, 637, 829
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	466, 613, 775
BstMAI	GTCTC	2 cut(s)	453, 934
BstMBI	GATC	3 cut(s)	463, 610, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 915
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	264, 569
BsuRI	GGCC	1 cut(s)	572
BtsCI	GGATG	5 cut(s)	288, 352, 541, 637, 829
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	3 cut(s)	481, 603, 925
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	2 cut(s)	355, 445
Cfr13I	GGNCC	2 cut(s)	25, 571
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	271, 335, 356, 446, 636
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	5 cut(s)	65, 209, 597, 606, 627
DpnI	GATC	3 cut(s)	465, 612, 774
DpnII	GATC	3 cut(s)	463, 610, 772
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	561, 732, 945
EcoT22I	ATGCAT	2 cut(s)	430, 637
EcoT38I	GRGCYC	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	5 cut(s)	274, 338, 359, 449, 639
FaqI	GGGAC	2 cut(s)	11, 412
FatI	CATG	5 cut(s)	270, 334, 355, 445, 635
FauI	CCCGC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	278, 558
FokI	GGATG	5 cut(s)	295, 359, 548, 644, 836
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	278, 558
FspBI	CTAG	2 cut(s)	561, 949
GluI	GCNGC	2 cut(s)	278, 558
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	572
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	5 cut(s)	274, 338, 359, 449, 639
HincII	GTYRAC	2 cut(s)	649, 891
HindII	GTYRAC	2 cut(s)	649, 891
HinfI	GANTC	2 cut(s)	39, 791
HphI	GGTGA	3 cut(s)	159, 701, 839
Hpy166II	GTNNAC	4 cut(s)	38, 439, 649, 891
Hpy188I	TCNGA	2 cut(s)	777, 871
Hpy188III	TCNNGA	5 cut(s)	189, 356, 446, 629, 939
Hpy8I	GTNNAC	4 cut(s)	38, 439, 649, 891
HpyAV	CCTTC	4 cut(s)	174, 208, 287, 756
HpyCH4III	ACNGT	3 cut(s)	35, 590, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 915
HpyF3I	CTNAG	5 cut(s)	65, 209, 597, 606, 627
Hsp92II	CATG	5 cut(s)	274, 338, 359, 449, 639
Kzo9I	GATC	3 cut(s)	463, 610, 772
LmnI	GCTCC	3 cut(s)	157, 385, 768
Lsp1109I	GCAGC	2 cut(s)	264, 569
LweI	GCATC	6 cut(s)	211, 264, 394, 415, 526, 622
MaeI	CTAG	2 cut(s)	561, 949
MaeIII	GTNAC	3 cut(s)	139, 620, 675
MalI	GATC	3 cut(s)	465, 612, 774
MboI	GATC	3 cut(s)	463, 610, 772
MfeI	CAATTG	3 cut(s)	149, 579, 732
MhlI	GDGCHC	2 cut(s)	441, 529
MluCI	AATT	5 cut(s)	20, 149, 579, 732, 883
MlyI	GAGTC	2 cut(s)	33, 800
MmeI	TCCRAC	1 cut(s)	679
Mph1103I	ATGCAT	2 cut(s)	430, 637
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	2 cut(s)	339, 444
MunI	CAATTG	3 cut(s)	149, 579, 732
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	230, 915
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	463, 610, 772
NlaIII	CATG	5 cut(s)	274, 338, 359, 449, 639
NlaIV	GGNNCC	2 cut(s)	27, 159
NsiI	ATGCAT	2 cut(s)	430, 637
PagI	TCATGA	2 cut(s)	355, 445
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	279, 559
PleI	GAGTC	2 cut(s)	33, 799
PpsI	GAGTC	2 cut(s)	33, 799
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	27, 159
PspPI	GGNCC	2 cut(s)	25, 571
PstI	CTGCAG	1 cut(s)	534
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	2 cut(s)	339, 444
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	278, 558
Sau3AI	GATC	3 cut(s)	463, 610, 772
Sau96I	GGNCC	2 cut(s)	25, 571
SbfI	CCTGCAGG	1 cut(s)	534
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	2 cut(s)	33, 800
SdaI	CCTGCAGG	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	441, 529
SfaNI	GCATC	6 cut(s)	211, 264, 394, 415, 526, 622
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	2 cut(s)	339, 444
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse8387I	CCTGCAGG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	20, 149, 579, 732, 883
SsiI	CCGC	4 cut(s)	105, 155, 179, 280
SspMI	CTAG	2 cut(s)	561, 949
TaaI	ACNGT	3 cut(s)	35, 590, 841
TaqI	TCGA	2 cut(s)	219, 241
TasI	AATT	5 cut(s)	20, 149, 579, 732, 883
TatI	WGTACW	1 cut(s)	841
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	3 cut(s)	481, 610, 925
TseI	GCWGC	2 cut(s)	277, 557
TspDTI	ATGAA	5 cut(s)	299, 306, 344, 432, 729
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	481, 610, 925
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	2 cut(s)	561, 949
ZrmI	AGTACT	1 cut(s)	843
Zsp2I	ATGCAT	2 cut(s)	430, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.