Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

22963172 .. 22964759

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTCTTCCGAATCAGCAGACTGTGGATTACCCTAGCTTCAAGCTCGTCATCGTCGGCGACGGCGGAAACCCTAACATTGAGAGTTTTGATTGTAGCGCAGGGAAGACTACTTTTGTGAAGCGACATATCACTGGAGAGTTCGAGAAGAAATACGAACGTGAGGAACTCAGATTTGAATTTGTGTTTTGGTTTGTGAATTTCAGCGACGATCGGTGTCGAAGTTCATCCCTTGGATTTCCACACCAACTTTGGGAAGATCAGATTCTACTGCTGGGACACGGCTGGTCAGGAGAAGTTTGGTGGGCTCAGAGATGGATACTATTTAGTAGATTCAGTGATATTGCAATGGTATGTGAGAACATCCCAATTGTTCTGTGCGGAAACAAGGTGGATGTAAAGAATAGGCAGGTGAAAGCAAAGCAGGTCACCTTTCACAGGAAGAAAAATCTCCAGTACTATGAGATTTCTGCTAAGAGCAATTACAACTTTGAGAAACCTTTCTTGTACCTTGCCAGAAAGCTTGCAGGAAATATGGAGCTGATCTTCGTTGAATCACCTGCTCTTGCTCCTCCTGAGGTTCACATTGACGTGGCTGAACAGACAAAGATCGATGAGGATTTGGAGAGGGTTAAACACCAACCACTTCCTGATGATGATGATGATCTGTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

226

Amino Acids

26.25

Weight (kDa)

5.34

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	113 - 175	6.6e-12	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	400, 568
Acc36I	ACCTGC	3 cut(s)	400, 415, 568
AciI	CCGC	2 cut(s)	66, 381
AcsI	RAATTY	2 cut(s)	179, 199
AfaI	GTAC	2 cut(s)	458, 509
AfiI	CCNNNNNNNGG	2 cut(s)	253, 438
AgsI	TTSAA	4 cut(s)	43, 179, 554, 674
AjiI	CACGTC	1 cut(s)	592
AluBI	AGCT	4 cut(s)	39, 46, 523, 541
AluI	AGCT	4 cut(s)	39, 46, 523, 541
ApoI	RAATTY	2 cut(s)	179, 199
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	421, 424, 549
AxyI	CCTNAGG	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	113
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	2 cut(s)	79, 298
BciVI	GTATCC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	36
BfuAI	ACCTGC	3 cut(s)	400, 415, 568
BfuI	GTATCC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	2 cut(s)	156, 437
Bsa29I	ATCGAT	1 cut(s)	612
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 438
Bse1I	ACTGG	2 cut(s)	139, 454
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	227, 363, 400
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	2 cut(s)	253, 438
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	184, 323, 567
BseNI	ACTGG	2 cut(s)	139, 454
BseRI	GAGGAG	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	214
BshVI	ATCGAT	1 cut(s)	612
BsiEI	CGRYCG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	253, 438
BsmFI	GGGAC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	211, 259, 543, 609, 664
BspACI	CCGC	2 cut(s)	66, 381
BspCNI	CTCAG	3 cut(s)	183, 322, 568
BspDI	ATCGAT	1 cut(s)	612
BspMI	ACCTGC	3 cut(s)	400, 415, 568
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	139, 454
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	5 cut(s)	211, 259, 543, 609, 664
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	4 cut(s)	170, 309, 474, 576
BstEII	GGTNACC	1 cut(s)	427
BstENI	CCTNNNNNAGG	1 cut(s)	436
BstF5I	GGATG	3 cut(s)	227, 363, 400
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	5 cut(s)	214, 262, 546, 612, 667
BstMBI	GATC	5 cut(s)	211, 259, 543, 609, 664
BstMCI	CGRYCG	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	312
BsuTUI	ATCGAT	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	3 cut(s)	227, 363, 400
BtsIMutI	CAGTG	2 cut(s)	132, 343
BveI	ACCTGC	3 cut(s)	400, 415, 568
Cac8I	GCNNGC	1 cut(s)	525
CfoI	GCGC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	457, 508
CviJI	RGCY	8 cut(s)	5, 39, 46, 285, 308, 523, 541, 596
CviKI_1	RGCY	8 cut(s)	5, 39, 46, 285, 308, 523, 541, 596
CviQI	GTAC	2 cut(s)	457, 508
DdeI	CTNAG	4 cut(s)	170, 309, 474, 576
DpnI	GATC	5 cut(s)	213, 261, 545, 611, 666
DpnII	GATC	5 cut(s)	211, 259, 543, 609, 664
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	310
Eco81I	CCTNAGG	1 cut(s)	576
Eco91I	GGTNACC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	232
FaiI	YATR	4 cut(s)	129, 355, 462, 536
FaqI	GGGAC	1 cut(s)	291
FokI	GGATG	3 cut(s)	214, 350, 407
FriOI	GRGCYC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	2 cut(s)	156, 437
HhaI	GCGC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	4 cut(s)	13, 265, 333, 554
HphI	GGTGA	3 cut(s)	421, 424, 549
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	12, 173, 264, 312
Hpy188III	TCNNGA	4 cut(s)	145, 291, 575, 650
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	3 cut(s)	59, 65, 212
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	160, 591
HpyCH4V	TGCA	2 cut(s)	347, 527
HpyF3I	CTNAG	4 cut(s)	170, 309, 474, 576
HpySE526I	ACGT	2 cut(s)	160, 591
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	211, 259, 543, 609, 664
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	538, 574
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	2 cut(s)	160, 591
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	5 cut(s)	213, 261, 545, 611, 666
MboI	GATC	5 cut(s)	211, 259, 543, 609, 664
MboII	GAAGA	5 cut(s)	118, 160, 269, 454, 538
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	4 cut(s)	179, 199, 369, 481
MnlI	CCTC	5 cut(s)	157, 571, 582, 610, 621
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	369
NdeII	GATC	5 cut(s)	211, 259, 543, 609, 664
NmuCI	GTSAC	1 cut(s)	427
PaqCI	CACCTGC	2 cut(s)	400, 568
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	4 cut(s)	13, 265, 333, 554
Ple19I	CGATCG	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	458, 509
RsaNI	GTAC	2 cut(s)	457, 508
RseI	CAYNNNNRTG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	633
Sau3AI	GATC	5 cut(s)	211, 259, 543, 609, 664
ScaI	AGTACT	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	179, 199, 369, 481
SsiI	CCGC	2 cut(s)	66, 381
SspMI	CTAG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	163, 594
TaqI	TCGA	3 cut(s)	144, 220, 612
TasI	AATT	4 cut(s)	179, 199, 369, 481
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	4 cut(s)	13, 265, 333, 554
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	2 cut(s)	139, 343
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	139, 343
XagI	CCTNNNNNAGG	1 cut(s)	436
XapI	RAATTY	2 cut(s)	179, 199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.