Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

1994949 .. 1996894

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03070.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTTGCCGAACCAACAGACTGTTGATTATCCGAGTTTCAAGCTCGTCATCGTCGGCGATGGAGGCACTGGAAAAACCACTTTCGTGAAAAGGCATCTCACTGGTGAATTCGAGAAGAAATACGAGCCCACCATTGGTGTGGAGGTTCATCCACTGGACTTCTTCACAAATTGTGGAAAGATCCGCTTTTACTGCTGGGACACTGCTGGGCAAGAGAAGTTTGGCGGTCTTCGAGATGGTTACTACATTCATGGGCAGTGTGCAATCATCATGTTTGACGTTACTGCTAGGTTGACATACAAGAATGTTCCTACATGGCACCGTGATCTCTGCCGTGTGTGCGAGAACATCCCTATTGTTCTCTGTGGCAACAAGGTTGATGTGAAGAACAGGCAGGTAAAAGCCAAGCAGGTTACCTTTCATAGAAAGAAGAATCTGCAGTACTATGAGATATCAGCCAAGAGCAACTACAACTTTGAGAAACCCTTCCTCTACTTGGCGAGGAAGCTTGCAGGTGACGCAAATCTTCATTTCGTCGAGTCTCCGGCCCTTGCTCCTCCAGAAGTGCAATTTGACATGGCTGCCCAACAACAGCATGAAGCTGAGCTTGCGGCAGCAGCTGCCCAACCTCTTCCTGATGACGATGACGAGGCATTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0031503 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

25.1

Weight (kDa)

6.39

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	3 cut(s)	388, 403, 506
AccB1I	GGYRCC	1 cut(s)	321
AciI	CCGC	3 cut(s)	187, 228, 614
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	137, 499
AgsI	TTSAA	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	5 cut(s)	46, 511, 605, 610, 623
AluI	AGCT	5 cut(s)	46, 511, 605, 610, 623
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	4 cut(s)	584, 617, 620, 623
ApoI	RAATTY	1 cut(s)	110
ArsI	GACNNNNNNTTYG	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	119, 530
AsuII	TTCGAA	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	4 cut(s)	571, 610, 629, 632
BccI	CCATC	2 cut(s)	56, 233
BceAI	ACGGC	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	440
BfuAI	ACCTGC	3 cut(s)	388, 403, 506
BisI	GCNGC	5 cut(s)	585, 615, 618, 621, 624
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	5 cut(s)	586, 616, 619, 622, 625
BmcAI	AGTACT	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 499
Bse1I	ACTGG	3 cut(s)	76, 109, 162
BseGI	GGATG	2 cut(s)	151, 351
BseLI	CCNNNNNNNGG	2 cut(s)	137, 499
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	3 cut(s)	76, 109, 162
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	4 cut(s)	571, 610, 629, 632
BseYI	CCCAGC	2 cut(s)	198, 209
BshFI	GGCC	1 cut(s)	551
BshNI	GGYRCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	137, 499
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	183, 328
Bsp1720I	GCTNAGC	1 cut(s)	606
BspACI	CCGC	3 cut(s)	187, 228, 614
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	444
BspMI	ACCTGC	3 cut(s)	388, 403, 506
BspPI	GGATC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	76, 109, 162
BssMI	GATC	2 cut(s)	183, 328
Bst4CI	ACNGT	2 cut(s)	25, 326
Bst6I	CTCTTC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	513, 612
BstDEI	CTNAG	1 cut(s)	606
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	151, 351
BstKTI	GATC	2 cut(s)	186, 331
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	183, 328
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 195, 342, 521, 611, 620, 623
BstPI	GGTNACC	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	440
BstV1I	GCAGC	4 cut(s)	571, 610, 629, 632
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	551
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	151, 351
BtsI	GCAGTG	2 cut(s)	204, 266
BtsIMutI	CAGTG	5 cut(s)	69, 102, 155, 204, 266
BveI	ACCTGC	3 cut(s)	388, 403, 506
Cac8I	GCNNGC	2 cut(s)	513, 612
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	550
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	5 cut(s)	254, 274, 318, 580, 599
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	2 cut(s)	185, 330
DpnII	GATC	2 cut(s)	183, 328
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	415
EcoO65I	GGTNACC	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	5 cut(s)	257, 277, 321, 583, 602
FaiI	YATR	8 cut(s)	255, 275, 301, 319, 426, 450, 581, 600
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 594, 626
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	5 cut(s)	253, 273, 317, 579, 598
Fnu4HI	GCNGC	5 cut(s)	585, 615, 618, 621, 624
FokI	GGATG	2 cut(s)	138, 338
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	5 cut(s)	585, 615, 618, 621, 624
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	5 cut(s)	585, 615, 618, 621, 624
GsaI	CCCAGC	2 cut(s)	202, 213
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	551
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	257, 277, 321, 583, 602
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	436, 542
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	119, 530
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	5 cut(s)	88, 115, 236, 563, 638
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	2 cut(s)	59, 542
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	25, 326
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	266, 442, 515, 571
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 195, 342, 521, 611, 620, 623
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	5 cut(s)	257, 277, 321, 583, 602
Kzo9I	GATC	2 cut(s)	183, 328
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	571, 610, 629, 632
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	242, 283, 415, 518
MalI	GATC	2 cut(s)	185, 330
MboI	GATC	2 cut(s)	183, 328
MboII	GAAGA	7 cut(s)	130, 157, 224, 400, 445, 521, 626
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	110, 172, 572
MlyI	GAGTC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	59, 139, 498, 503, 570, 642, 646
MroXI	GAANNNNTTC	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	86, 140
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	7 cut(s)	66, 195, 342, 521, 611, 620, 623
NdeII	GATC	2 cut(s)	183, 328
NlaIII	CATG	5 cut(s)	257, 277, 321, 583, 602
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	518
NspV	TTCGAA	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	586, 616, 619, 622, 625
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PspEI	GGTNACC	1 cut(s)	415
PspFI	CCCAGC	2 cut(s)	198, 209
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	86, 140
SatI	GCNGC	5 cut(s)	585, 615, 618, 621, 624
Sau3AI	GATC	2 cut(s)	183, 328
Sau96I	GGNCC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	440
SfuI	TTCGAA	1 cut(s)	660
SmiMI	CAYNNNNRTG	2 cut(s)	86, 140
Sse9I	AATT	3 cut(s)	110, 172, 572
SsiI	CCGC	3 cut(s)	187, 228, 614
SspMI	CTAG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	25, 326
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	114, 235, 540, 660
TasI	AATT	3 cut(s)	110, 172, 572
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	5 cut(s)	76, 109, 162, 211, 266
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	4 cut(s)	584, 617, 620, 623
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	5 cut(s)	140, 242, 413, 521, 615
TspRI	CASTG	5 cut(s)	76, 109, 162, 211, 266
XapI	RAATTY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.