Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Forward (+)

39316898 .. 39319407

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G473000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTCTTCCGAATCAGCAAACTGTCGATTACCCTAGCTTCAAGCTTGTTATCGTCGGCGACGGTGGAACTGGCAAGACCACGTTTGTGAAACGCCATCTCACTGGAGAGTTTGAGAAGAAATACGAACCAACTATTGGTGTTGAAGTTCATCCGTTGGACTTCTTCACAAACTGTGGGAAGATCAGGTTCTACTGTTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTCAGAGATGGTTATTATATTCATGGGCAGTGTGCAATCATCATGTTTGATGTTACTGCTCGTTTGACATACAAAAATGTCCCCACATGGCACCGTGATCTCTGCAGGGTGTGTGAGAACATTCCCATTGTTCTGTGCGGAAACAAGGTGGATGTGAAAAATAGGCAGGTAAAAGCAAAGCAGGTTACCTTTCACAGGAAGAAAAATCTCCAGTACTACGAAATTTCTGCAAAGAGCAACTACAACTTTGAGAAACCTTTCTTGTATCTTGCCAGAAAGCTTGCAGGAGAGACTGAGCTGCGTTTTGTTGAATCACCTGCTCTTGCTCCTCCAGAAGTTCAGATTGACATGGCTGTCCAAGCAAAGCATGAACAAGAATTGGCACAGGCAGCTGCACAACCACTTCCAGATGACGATGATGATCTGTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0022613 GO:0031503 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

25.26

Weight (kDa)

6.6

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
AasI	GACNNNNNNGTC	1 cut(s)	584
Acc36I	ACCTGC	3 cut(s)	388, 403, 556
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	2 cut(s)	207, 369
AcsI	RAATTY	1 cut(s)	453
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	137, 426
AgsI	TTSAA	3 cut(s)	43, 146, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	5 cut(s)	39, 46, 511, 529, 623
AluI	AGCT	5 cut(s)	39, 46, 511, 529, 623
Alw26I	GTCTC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	529, 620, 623
ApoI	RAATTY	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	516, 610, 632
BccI	CCATC	2 cut(s)	105, 233
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	334
BfuAI	ACCTGC	3 cut(s)	388, 403, 556
BisI	GCNGC	3 cut(s)	530, 621, 624
BlsI	GCNGC	3 cut(s)	531, 622, 625
BmcAI	AGTACT	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	323
BpmI	CTGGAG	3 cut(s)	126, 425, 546
BsaBI	GATNNNNATC	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 426
Bse1I	ACTGG	3 cut(s)	76, 109, 442
Bse8I	GATNNNNATC	1 cut(s)	651
BseGI	GGATG	2 cut(s)	151, 388
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	2 cut(s)	137, 426
BseMII	CTCAG	2 cut(s)	247, 516
BseNI	ACTGG	3 cut(s)	76, 109, 442
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	516, 610, 632
BsgI	GTGCAG	1 cut(s)	609
BshNI	GGYRCC	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	215, 296
BslI	CCNNNNNNNGG	2 cut(s)	137, 426
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	2 cut(s)	215, 296
Bsp143I	GATC	3 cut(s)	183, 328, 652
BspACI	CCGC	2 cut(s)	207, 369
BspCNI	CTCAG	2 cut(s)	246, 517
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	338
BspMI	ACCTGC	3 cut(s)	388, 403, 556
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	76, 109, 442
BssMI	GATC	3 cut(s)	183, 328, 652
Bst4CI	ACNGT	5 cut(s)	25, 65, 176, 197, 326
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	233, 525
BstEII	GGTNACC	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	151, 388
BstKTI	GATC	3 cut(s)	186, 331, 655
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	3 cut(s)	183, 328, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 620
BstPI	GGTNACC	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	516, 610, 632
BstXI	CCANNNNNNTGG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	151, 388
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	102, 266
BveI	ACCTGC	3 cut(s)	388, 403, 556
Cac8I	GCNNGC	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	5 cut(s)	254, 274, 318, 580, 599
CviJI	RGCY	7 cut(s)	5, 39, 46, 511, 529, 584, 623
CviKI_1	RGCY	7 cut(s)	5, 39, 46, 511, 529, 584, 623
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	233, 525
DpnI	GATC	3 cut(s)	185, 330, 654
DpnII	GATC	3 cut(s)	183, 328, 652
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	415
FaeI	CATG	5 cut(s)	257, 277, 321, 583, 602
FaiI	YATR	7 cut(s)	249, 255, 275, 301, 319, 581, 600
FaqI	GGGAC	2 cut(s)	215, 296
FatI	CATG	5 cut(s)	253, 273, 317, 579, 598
Fnu4HI	GCNGC	3 cut(s)	530, 621, 624
FokI	GGATG	2 cut(s)	138, 395
Fsp4HI	GCNGC	3 cut(s)	530, 621, 624
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	3 cut(s)	530, 621, 624
GsuI	CTGGAG	3 cut(s)	126, 425, 546
Hin1II	CATG	5 cut(s)	257, 277, 321, 583, 602
HindIII	AAGCTT	2 cut(s)	44, 509
HinfI	GANTC	3 cut(s)	13, 231, 542
HphI	GGTGA	1 cut(s)	537
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	12, 236, 573
Hpy188III	TCNNGA	3 cut(s)	215, 563, 638
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	2 cut(s)	59, 65
HpyCH4III	ACNGT	5 cut(s)	25, 65, 176, 197, 326
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	266, 336, 461, 515, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 620
HpyF3I	CTNAG	2 cut(s)	233, 525
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	257, 277, 321, 583, 602
Kzo9I	GATC	3 cut(s)	183, 328, 652
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	3 cut(s)	516, 610, 632
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	3 cut(s)	185, 330, 654
MboI	GATC	3 cut(s)	183, 328, 652
MboII	GAAGA	4 cut(s)	130, 157, 193, 442
MluCI	AATT	2 cut(s)	453, 608
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	209, 623
MwoI	GCNNNNNNNGC	2 cut(s)	590, 620
NdeII	GATC	3 cut(s)	183, 328, 652
NlaIII	CATG	5 cut(s)	257, 277, 321, 583, 602
NlaIV	GGNNCC	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	13, 542
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	531, 622, 625
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	3 cut(s)	530, 621, 624
Sau3AI	GATC	3 cut(s)	183, 328, 652
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	453, 608
SsiI	CCGC	2 cut(s)	207, 369
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	5 cut(s)	25, 65, 176, 197, 326
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	453, 608
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	13, 542
TscAI	CASTG	2 cut(s)	109, 266
TseI	GCWGC	3 cut(s)	529, 620, 623
TspDTI	ATGAA	3 cut(s)	140, 242, 615
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	109, 266
Van91I	CCANNNNNTGG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.