Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

59243381 .. 59244833

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG407000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCGAATTTCGACGATCGGTGTCGAAGTTCATCCCTTGGATTTCCACACCAACTTTGGGAAGATCAGATTCTACTGCTGGGACACGGCTGGTCAGGAGAAGTTCGGTGGACTCAGAGACGGATACTATGTGCCATTATCATGTTTGATGTGACTGCTCGTTTGACATACAAGAATGTCCCGACATGGCACCGTGACCTATGCAGGGTATGCGAGAACATTCCGATTGTTTTGTGTGGAAACAAGGTGGATGTAAAGAATAGGCAGGTGAAAGCAAAGCAGGTTACCTTTCATAGGAAGAAAAATCTCCAGTACTATGAAATCTCTGCCAAGAGCAATTACAACTTTGAGAAACCTTTCTTGTACCTTGCCAGAAAGCTTGCAGGAAATATGGAAGTGGTCTTTGTTGAATCACCTGCTCTTGCTCCTCCAGAGGTTCATATTGATTTGGCTGAACAGACAAAGCTTGAAGAGGAATTGGAAAGGGTTAAACACCAACCACTTCCTGATGATGATGATGATCTGTTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0022613 GO:0031503 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

177

Amino Acids

20.73

Weight (kDa)

6.31

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	40 - 127	4.4e-21	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	256, 424
Acc36I	ACCTGC	3 cut(s)	256, 271, 424
AccB1I	GGYRCC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	2 cut(s)	314, 365
AfiI	CCNNNNNNNGG	3 cut(s)	58, 205, 294
AgsI	TTSAA	2 cut(s)	410, 470
AluBI	AGCT	2 cut(s)	379, 466
AluI	AGCT	2 cut(s)	379, 466
Alw26I	GTCTC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp700I	GAANNNNTTC	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	280, 405
BanI	GGYRCC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	112
BfuAI	ACCTGC	3 cut(s)	256, 271, 424
BfuI	GTATCC	1 cut(s)	117
BmcAI	AGTACT	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	293, 414
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 205, 294
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	32, 256
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	58, 205, 294
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	96, 164
BslI	CCNNNNNNNGG	3 cut(s)	58, 205, 294
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	96, 164
Bsp143I	GATC	3 cut(s)	16, 64, 520
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	3 cut(s)	256, 271, 424
BspT107I	GGYRCC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	16, 64, 520
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	32, 256
BstKTI	GATC	3 cut(s)	19, 67, 523
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	16, 64, 520
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstPI	GGTNACC	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	32, 256
BveI	ACCTGC	3 cut(s)	256, 271, 424
Cac8I	GCNNGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	313, 364
CviAII	CATG	2 cut(s)	142, 186
CviJI	RGCY	4 cut(s)	90, 379, 452, 466
CviKI_1	RGCY	4 cut(s)	90, 379, 452, 466
CviQI	GTAC	2 cut(s)	313, 364
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	18, 66, 522
DpnII	GATC	3 cut(s)	16, 64, 520
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	145, 189
FaqI	GGGAC	2 cut(s)	96, 164
FatI	CATG	2 cut(s)	141, 185
FokI	GGATG	2 cut(s)	19, 263
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	2 cut(s)	293, 414
Hin1II	CATG	2 cut(s)	145, 189
HindIII	AAGCTT	2 cut(s)	377, 464
HinfI	GANTC	3 cut(s)	70, 112, 410
HphI	GGTGA	2 cut(s)	280, 405
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	69, 117, 225
Hpy188III	TCNNGA	4 cut(s)	96, 181, 431, 506
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	204, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	145, 189
Kzo9I	GATC	3 cut(s)	16, 64, 520
LmnI	GCTCC	1 cut(s)	430
MaeIII	GTNAC	3 cut(s)	151, 194, 283
MalI	GATC	3 cut(s)	18, 66, 522
MboI	GATC	3 cut(s)	16, 64, 520
MboII	GAAGA	3 cut(s)	74, 310, 482
MluCI	AATT	3 cut(s)	7, 337, 476
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	427, 438, 466
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	3 cut(s)	16, 64, 520
NlaIII	CATG	2 cut(s)	145, 189
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	151, 194
PaqCI	CACCTGC	2 cut(s)	256, 424
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	70, 410
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	314, 365
RsaNI	GTAC	2 cut(s)	313, 364
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	489
Sau3AI	GATC	3 cut(s)	16, 64, 520
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	7, 337, 476
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	3 cut(s)	12, 25, 528
TasI	AATT	3 cut(s)	7, 337, 476
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	70, 410
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	151, 194
Tsp45I	GTSAC	2 cut(s)	151, 194
TspDTI	ATGAA	4 cut(s)	21, 281, 333, 428
TspGWI	ACGGA	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.