Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3169720 .. 3172182

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG045400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTTTGCCGAACCAACAGACTGTGGATTATCCGAGCTTCAAGCTCGTCATCGTCGGCGACGGAGGCACCGGAAAGACCACTTTCGTGAAGAGACATCTTACCGGAGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCTCTAGACTTCTTCACAAATTGTGGAAAGATCCGCTTTTACTGCTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGAGATGGTTACTACATCCATGGGCAATGTGCAATTATTATGTTTGATGTTACTGCAAGATTGACATACAAGAATGTTCCTACATGGCACCGTGATCTTTGCAGGGTTTGTGAGAACATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAAGCTAAGCAGGTGACCTTTCATAGGAAGAAGAACCTGCAGTACTATGAGATATCTGCAAAGAGCAACTACAATTTCGAGAAACCTTTCCTCTACCTGGCCAGGAAACTTGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0031503 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

9.34

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 139	4.8e-11	ADP-ribosylation factor family
Ras	PF00071	15 - 171	5.3e-48	Ras family
Roc	PF08477	15 - 128	1.5e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	3 cut(s)	388, 403, 447
AccB1I	GGYRCC	2 cut(s)	68, 321
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	211, 501
AcsI	RAATTY	2 cut(s)	110, 221
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	498, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	39, 46, 407
AluI	AGCT	3 cut(s)	39, 46, 407
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	211, 501
ApoI	RAATTY	2 cut(s)	110, 221
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	427
BalI	TGGCCA	2 cut(s)	213, 503
BanI	GGYRCC	2 cut(s)	68, 321
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	2 cut(s)	500, 505
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	440
BfuAI	ACCTGC	3 cut(s)	388, 403, 447
BfuI	GTATCC	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	408
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	2 cut(s)	500, 505
BmiI	GGNNCC	2 cut(s)	70, 323
BmrFI	CCNGG	2 cut(s)	500, 505
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	71, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 426, 499
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	500, 505
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	151, 249
BseLI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
BseMI	GCAATG	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	213, 503
BshNI	GGYRCC	2 cut(s)	68, 321
BsiSI	CCGG	2 cut(s)	72, 105
BslI	CCNNNNNNNGG	3 cut(s)	137, 426, 499
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	213, 503
Bsp143I	GATC	2 cut(s)	183, 328
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	213, 503
BspLI	GGNNCC	2 cut(s)	70, 323
BspMAI	CTGCAG	1 cut(s)	444
BspMI	ACCTGC	3 cut(s)	388, 403, 447
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	2 cut(s)	68, 321
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	183, 328
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	500, 505
Bst4CI	ACNGT	2 cut(s)	25, 326
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	233, 408
BstDSI	CCRYGG	1 cut(s)	253
BstEII	GGTNACC	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	151, 249
BstKTI	GATC	2 cut(s)	186, 331
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	183, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 195
BstNI	CCWGG	2 cut(s)	500, 505
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	498, 503
BstSFI	CTRYAG	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	213, 503
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	151, 249
BveI	ACCTGC	3 cut(s)	388, 403, 447
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	2 cut(s)	254, 318
CviJI	RGCY	6 cut(s)	5, 39, 46, 213, 407, 503
CviKI_1	RGCY	6 cut(s)	5, 39, 46, 213, 407, 503
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	233, 408
DpnI	GATC	2 cut(s)	185, 330
DpnII	GATC	2 cut(s)	183, 328
EaeI	YGGCCR	2 cut(s)	211, 501
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	498, 503
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	257, 321
FaiI	YATR	8 cut(s)	126, 255, 275, 301, 319, 353, 426, 450
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	2 cut(s)	253, 317
FokI	GGATG	2 cut(s)	138, 236
FspBI	CTAG	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	213, 503
HapII	CCGG	2 cut(s)	72, 105
Hin1II	CATG	2 cut(s)	257, 321
HpaII	CCGG	2 cut(s)	72, 105
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	3 cut(s)	88, 158, 481
Hpy99I	CGWCG	2 cut(s)	59, 65
HpyCH4III	ACNGT	2 cut(s)	25, 326
HpyCH4V	TGCA	6 cut(s)	266, 290, 336, 442, 461, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 195
HpyF3I	CTNAG	2 cut(s)	233, 408
Hsp92II	CATG	2 cut(s)	257, 321
Kzo9I	GATC	2 cut(s)	183, 328
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	242, 283, 415
MalI	GATC	2 cut(s)	185, 330
MboI	GATC	2 cut(s)	183, 328
MboII	GAAGA	6 cut(s)	103, 130, 157, 400, 442, 445
MflI	RGATCY	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	213, 503
MluCI	AATT	5 cut(s)	110, 172, 221, 267, 475
MluNI	TGGCCA	2 cut(s)	213, 503
MnlI	CCTC	4 cut(s)	59, 139, 165, 503
Mox20I	TGGCCA	2 cut(s)	213, 503
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	2 cut(s)	213, 503
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	213, 503
MspI	CCGG	2 cut(s)	72, 105
MspR9I	CCNGG	2 cut(s)	500, 505
MvaI	CCWGG	2 cut(s)	500, 505
MwoI	GCNNNNNNNGC	2 cut(s)	66, 195
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	183, 328
NlaIII	CATG	2 cut(s)	257, 321
NlaIV	GGNNCC	2 cut(s)	70, 323
NmuCI	GTSAC	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	498, 503
PspEI	GGTNACC	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	498, 503
PspN4I	GGNNCC	2 cut(s)	70, 323
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	183, 328
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	500, 505
SfcI	CTRYAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	110, 172, 221, 267, 475
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	498, 503
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	25, 326
TaqI	TCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	110, 172, 221, 267, 475
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	140, 141, 413
TspGWI	ACGGA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	2 cut(s)	110, 221
XbaI	TCTAGA	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.