Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023149.1

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

355 .. 1199

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaggtgcgggtgtggtaacagtattctgactttgtatcttttcttttccagtattcatggacagtgtgccattatcatgtttgatgtgactgctcgtttgacatacaagaatgtcccgacatggcaccgtgacctatgcagggtatgcgagaacattcctattgttttgtgcggaaacaaggtggatgtaaagaataggcaggtgaaagcaaagcaggtcacctttcataggaagaaaaatctccagtactatgaaatctctgccaagagcaattacaactttgagaaacctttcttgtaccttgccagaaagcttgcaggaaatatggaagtggtctttgttgaatcacctgctcttgctcctccagaggttcatattgatgtggctgaacagacaaagcttgaagaggaattggaaagggttaaacaccaaccacttcctgatgatgatgatgatctgttcgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017111 GO:0022613 GO:0031503 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

156

Amino Acids

18.05

Weight (kDa)

6.52

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	193, 361
Acc36I	ACCTGC	3 cut(s)	193, 208, 361
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	9, 174
AfaI	GTAC	2 cut(s)	251, 302
AfiI	CCNNNNNNNGG	2 cut(s)	142, 231
AgsI	TTSAA	2 cut(s)	347, 407
AluBI	AGCT	2 cut(s)	316, 403
AluI	AGCT	2 cut(s)	316, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp700I	GAANNNNTTC	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	214, 217, 342
BanI	GGYRCC	1 cut(s)	126
BfuAI	ACCTGC	3 cut(s)	193, 208, 361
BmcAI	AGTACT	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	230, 351
BsaBI	GATNNNNATC	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 231
Bse1I	ACTGG	2 cut(s)	51, 247
Bse8I	GATNNNNATC	1 cut(s)	456
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	142, 231
BseNI	ACTGG	2 cut(s)	51, 247
BseRI	GAGGAG	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	142, 231
BsmFI	GGGAC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	9, 174
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	3 cut(s)	193, 208, 361
BspT107I	GGYRCC	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	51, 247
BssMI	GATC	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	23, 66, 131
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	318
BstEII	GGTNACC	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstPI	GGTNACC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	71
BveI	ACCTGC	3 cut(s)	193, 208, 361
Cac8I	GCNNGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	250, 301
CviAII	CATG	3 cut(s)	59, 79, 123
CviJI	RGCY	3 cut(s)	316, 389, 403
CviKI_1	RGCY	3 cut(s)	316, 389, 403
CviQI	GTAC	2 cut(s)	250, 301
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	220
FaeI	CATG	3 cut(s)	62, 82, 126
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	58, 78, 122
FauI	CCCGC	1 cut(s)	2
FokI	GGATG	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	230, 351
Hin1II	CATG	3 cut(s)	62, 82, 126
HindIII	AAGCTT	2 cut(s)	314, 401
HinfI	GANTC	1 cut(s)	347
HphI	GGTGA	3 cut(s)	214, 217, 342
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	118, 368, 443
HpyCH4III	ACNGT	3 cut(s)	23, 66, 131
HpyCH4V	TGCA	2 cut(s)	141, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	62, 82, 126
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	367
MaeIII	GTNAC	4 cut(s)	17, 88, 131, 220
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	247, 419
MluCI	AATT	2 cut(s)	274, 413
MnlI	CCTC	3 cut(s)	364, 375, 403
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	2 cut(s)	77, 381
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	62, 82, 126
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	3 cut(s)	88, 131, 220
PaqCI	CACCTGC	2 cut(s)	193, 361
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	251, 302
RsaNI	GTAC	2 cut(s)	250, 301
RseI	CAYNNNNRTG	2 cut(s)	77, 381
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	77, 381
Sse9I	AATT	2 cut(s)	274, 413
SsiI	CCGC	2 cut(s)	9, 174
TaaI	ACNGT	3 cut(s)	23, 66, 131
TaqI	TCGA	1 cut(s)	465
TasI	AATT	2 cut(s)	274, 413
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	3 cut(s)	88, 131, 220
Tsp45I	GTSAC	3 cut(s)	88, 131, 220
TspDTI	ATGAA	4 cut(s)	47, 218, 270, 365
TspRI	CASTG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.