Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3638588 .. 3641039

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTGTTGCATTGTACAGGAAAGACCACTTTCGTGAAGAGACATCTTACCGGAGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAGGTTCATCCTCTAGACTTCTTCACAAATTGTGGAAAGATCCGCTTTTACTGCTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGAGATGGTTACTACATCCATGGGCAATGTGCAATTATTATGTTTGATGTTACTGCAAGATTGACATACAAGAATGTTCCTACATGGCACCGTGATCTTTGCAGGGTTTGTGAGAACATACCCATTGTTCTCTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAAGCTAAGCAGGTGACCTTTCATAGGAAGAAGAACCTGCAGTACTATGAGATATCTGCAAAGAGCAACTACAATTTCGAGAAACCTTTCCTCTACCTGGCCAGGAAGCTTGCAGGTGACACCAATCTTCATTTCGTCGAGTCTCCAGCTCTTGCTCCCCCGGAAGTCCAGATTGACATGGCTACTCAACAACAGCACGAGGCTGAGCTTGTAGCTGCAGCTGCCCAACCTCTTCCCGATGACGATGATGATGCATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0031503 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

203

Amino Acids

23.28

Weight (kDa)

6.7

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	3 - 121	4.6e-09	ADP-ribosylation factor family
Ras	PF00071	5 - 153	1e-42	Ras family
Roc	PF08477	5 - 110	9.2e-26	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20010 AT5G20020
fragaria_vesca	FvH4_1g03920 FvH4_2g29671
malus_domestica	MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1
prunus_persica	Prupe.1G473000_v2.0.a1
pyrus_communis	pycom02g03070 pycom15g10830 pycom15g15910
rosa_chinensis	RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641
rosa_laevigata	RLG00000011497 RLG00000016023
rosa_multiflora	Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152000 Rroxscaffold_7G00169460
rosa_rugosa	Rorug02G0000100 Rorug02G0000200 Rorug06G0281800
rosa_samantha	Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700
rosa_wichuraiana	Rw2G003710 Rw6G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	349, 452
Acc36I	ACCTGC	4 cut(s)	334, 349, 393, 452
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	2 cut(s)	157, 447
AcsI	RAATTY	2 cut(s)	56, 167
AfaI	GTAC	2 cut(s)	16, 392
AfiI	CCNNNNNNNGG	3 cut(s)	83, 372, 445
AjnI	CCWGG	2 cut(s)	444, 449
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 464, 496
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	6 cut(s)	353, 457, 497, 556, 563, 569
AluI	AGCT	6 cut(s)	353, 457, 497, 556, 563, 569
Alw26I	GTCTC	2 cut(s)	34, 495
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	157, 447
ApeKI	GCWGC	3 cut(s)	563, 566, 569
ApoI	RAATTY	2 cut(s)	56, 167
Asp700I	GAANNNNTTC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	373, 476
BalI	TGGCCA	2 cut(s)	159, 449
BanI	GGYRCC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	550, 556, 578
BccI	CCATC	1 cut(s)	179
BcgI	CGANNNNNNTGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	446, 451
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	34, 495
BfaI	CTAG	2 cut(s)	104, 610
BfmI	CTRYAG	2 cut(s)	386, 564
BfuAI	ACCTGC	4 cut(s)	334, 349, 393, 452
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	564, 567, 570
BlpI	GCTNAGC	2 cut(s)	354, 552
BlsI	GCNGC	3 cut(s)	565, 568, 571
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	3 cut(s)	446, 451, 509
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	3 cut(s)	446, 451, 509
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	477
Bpu1102I	GCTNAGC	2 cut(s)	354, 552
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	199, 507
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 372, 445
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	446, 451
BseDI	CCNNGG	2 cut(s)	199, 507
BseGI	GGATG	2 cut(s)	97, 195
BseLI	CCNNNNNNNGG	3 cut(s)	83, 372, 445
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	550, 556, 578
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	2 cut(s)	159, 449
BshNI	GGYRCC	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	51, 509
BslI	CCNNNNNNNGG	3 cut(s)	83, 372, 445
BsmAI	GTCTC	2 cut(s)	34, 495
BsnI	GGCC	2 cut(s)	159, 449
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	129, 274
Bsp1720I	GCTNAGC	2 cut(s)	354, 552
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	159, 449
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	269
BspMAI	CTGCAG	2 cut(s)	390, 568
BspMI	ACCTGC	4 cut(s)	334, 349, 393, 452
BspPI	GGATC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	199, 507
BssMI	GATC	2 cut(s)	129, 274
BssSI	CACGAG	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	446, 451
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	32, 585
BstAUI	TGTACA	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	157, 459
BstDEI	CTNAG	3 cut(s)	179, 354, 552
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	97, 195
BstKTI	GATC	2 cut(s)	132, 277
BstMAI	GTCTC	2 cut(s)	34, 495
BstMBI	GATC	2 cut(s)	129, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 569
BstNI	CCWGG	2 cut(s)	446, 451
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	3 cut(s)	444, 449, 507
BstSFI	CTRYAG	2 cut(s)	386, 564
BstV1I	GCAGC	3 cut(s)	550, 556, 578
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	159, 449
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	97, 195
BveI	ACCTGC	4 cut(s)	334, 349, 393, 452
Cac8I	GCNNGC	2 cut(s)	157, 459
Csp6I	GTAC	2 cut(s)	15, 391
CviAII	CATG	3 cut(s)	200, 264, 526
CviQI	GTAC	2 cut(s)	15, 391
DdeI	CTNAG	3 cut(s)	179, 354, 552
DpnI	GATC	2 cut(s)	131, 276
DpnII	GATC	2 cut(s)	129, 274
EaeI	YGGCCR	2 cut(s)	157, 447
Eam1104I	CTCTTC	2 cut(s)	32, 585
EarI	CTCTTC	2 cut(s)	32, 585
Eco130I	CCWWGG	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	444, 449
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	3 cut(s)	203, 267, 529
FaiI	YATR	9 cut(s)	72, 201, 221, 247, 265, 299, 372, 396, 527
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	3 cut(s)	199, 263, 525
Fnu4HI	GCNGC	3 cut(s)	564, 567, 570
FokI	GGATG	2 cut(s)	84, 182
Fsp4HI	GCNGC	3 cut(s)	564, 567, 570
FspBI	CTAG	2 cut(s)	104, 610
GluI	GCNGC	3 cut(s)	564, 567, 570
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	159, 449
HapII	CCGG	2 cut(s)	51, 509
Hin1II	CATG	3 cut(s)	203, 267, 529
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	488
HpaII	CCGG	2 cut(s)	51, 509
HphI	GGTGA	2 cut(s)	373, 476
Hpy188III	TCNNGA	5 cut(s)	34, 104, 427, 517, 584
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	9 cut(s)	10, 212, 236, 282, 388, 407, 461, 566, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 569
HpyF3I	CTNAG	3 cut(s)	179, 354, 552
Hsp92II	CATG	3 cut(s)	203, 267, 529
Kzo9I	GATC	2 cut(s)	129, 274
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	550, 556, 578
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	104, 610
MaeIII	GTNAC	4 cut(s)	188, 229, 361, 464
MalI	GATC	2 cut(s)	131, 276
MboI	GATC	2 cut(s)	129, 274
MboII	GAAGA	8 cut(s)	49, 76, 103, 346, 388, 391, 467, 572
MflI	RGATCY	1 cut(s)	129
MlsI	TGGCCA	2 cut(s)	159, 449
MluCI	AATT	5 cut(s)	56, 118, 167, 213, 421
MluNI	TGGCCA	2 cut(s)	159, 449
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	5 cut(s)	85, 111, 449, 541, 588
Mox20I	TGGCCA	2 cut(s)	159, 449
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	2 cut(s)	159, 449
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	2 cut(s)	159, 449
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	51, 509
MspR9I	CCNGG	3 cut(s)	446, 451, 509
MvaI	CCWGG	2 cut(s)	446, 451
MwoI	GCNNNNNNNGC	2 cut(s)	141, 569
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	129, 274
NlaIII	CATG	3 cut(s)	203, 267, 529
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	361, 464
NsiI	ATGCAT	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	32
PaqCI	CACCTGC	2 cut(s)	349, 452
PdmI	GAANNNNTTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	565, 568, 571
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	2 cut(s)	444, 449
PspEI	GGTNACC	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	444, 449
PspN4I	GGNNCC	1 cut(s)	269
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstI	CTGCAG	2 cut(s)	390, 568
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	16, 392
RsaNI	GTAC	2 cut(s)	15, 391
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	564, 567, 570
Sau3AI	GATC	2 cut(s)	129, 274
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	3 cut(s)	446, 451, 509
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	2 cut(s)	386, 564
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	56, 118, 167, 213, 421
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	2 cut(s)	104, 610
StyD4I	CCNGG	3 cut(s)	444, 449, 507
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	426, 486
TasI	AATT	5 cut(s)	56, 118, 167, 213, 421
TatI	WGTACW	2 cut(s)	14, 390
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	361, 464
TseI	GCWGC	3 cut(s)	563, 566, 569
Tsp45I	GTSAC	2 cut(s)	361, 464
TspDTI	ATGAA	4 cut(s)	86, 87, 359, 467
Van91I	CCANNNNNTGG	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	370
XapI	RAATTY	2 cut(s)	56, 167
XbaI	TCTAGA	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	104, 610
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.