Rorug02G0000100

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
7162 .. 7518
357 bp
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UTR
Exon/CDS
Intron
Rorug02G0000100.1

Sequence Viewer

Length: 357 bp
ATGACGTACAGAGCCATAGATAGGATGAAAAACAACTATAGGTTGCTTGGTATAATTAAATTGCATCTATTAAGGAAGGATGAAATGGTGACAAAGTTGAGTGATGGTTGCGTCGCCATACATGAGGGCCCACTGCGTCACGGGTTGAAGTTGCCATTGCTGCCCAGCTTGCAATACTTCCTTTGCAAGCTTTATGTTGCGGTCGGCCAGGTGTCTGTCAACATATGGAAGATACTATTAACGTTGACAGCATTGTGGGACTTGTCGGGGTGCGAGTGGTCTACCATTGCTGAAGTGCTATATTTCTATGAGTTGACATACAACGGGAGAGTGGGTTGTAGCGGGACTGTAATGTAA

Protein Analysis

118

Amino Acids

13.47

Weight (kDa)

8.95

Isoelectric Point (pI)

15.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AciI CCGC 2 cut(s) 200, 342
AclI AACGTT 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 168, 190
AluI AGCT 2 cut(s) 168, 190
AoxI GGCC 2 cut(s) 127, 205
ApaI GGGCCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 127, 128
AsuHPI GGTGA 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 127, 128
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 155, 285
BseBI CCWGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 30, 85
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 2 cut(s) 155, 285
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 129, 207
BsiEI CGRYCG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 129, 207
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 131
BspACI CCGC 2 cut(s) 200, 342
BspANI GGCC 2 cut(s) 129, 207
BspLI GGNNCC 1 cut(s) 129
BsrDI GCAATG 2 cut(s) 155, 285
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 170, 188
BstF5I GGATG 2 cut(s) 30, 85
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 160, 169
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 2 cut(s) 129, 207
BtsCI GGATG 2 cut(s) 30, 85
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 170, 188
Cfr13I GGNCC 2 cut(s) 127, 128
CseI GACGC 2 cut(s) 100, 125
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 122
CviJI RGCY 5 cut(s) 14, 129, 168, 190, 207
CviKI_1 RGCY 5 cut(s) 14, 129, 168, 190, 207
CviQI GTAC 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 125
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 121
FauI CCCGC 1 cut(s) 335
FauNDI CATATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 2 cut(s) 37, 92
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 129, 207
HgaI GACGC 2 cut(s) 100, 125
Hin1II CATG 1 cut(s) 125
HincII GTYRAC 3 cut(s) 220, 246, 315
HindII GTYRAC 3 cut(s) 220, 246, 315
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 220, 246, 282, 315
Hpy8I GTNNAC 4 cut(s) 220, 246, 282, 315
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 5, 242
HpyCH4V TGCA 3 cut(s) 64, 172, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 169
HpySE526I ACGT 2 cut(s) 5, 242
Hsp92II CATG 1 cut(s) 125
LpnPI CCDG 3 cut(s) 178, 194, 221
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 73
MaeII ACGT 2 cut(s) 5, 242
MaeIII GTNAC 2 cut(s) 88, 137
MboII GAAGA 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 54, 59
MnlI CCTC 1 cut(s) 118
MseI TTAA 3 cut(s) 57, 71, 239
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 160, 169
NdeI CATATG 1 cut(s) 224
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 88, 137
PkrI GCNGC 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 129
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 2 cut(s) 127, 128
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 57, 71, 239
SatI GCNGC 1 cut(s) 161
Sau96I GGNCC 2 cut(s) 127, 128
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 8, 44, 170, 192, 213, 245
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 37
Sse9I AATT 2 cut(s) 54, 59
SsiI CCGC 2 cut(s) 200, 342
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 8, 245
TasI AATT 2 cut(s) 54, 59
Tru1I TTAA 3 cut(s) 57, 71, 239
Tru9I TTAA 3 cut(s) 57, 71, 239
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 88, 137
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 88, 137
TspDTI ATGAA 2 cut(s) 41, 96
TspRI CASTG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.