ribosome localization
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G20010 AT5G20020 |
| fragaria_vesca | FvH4_1g03920 FvH4_2g29671 |
| malus_domestica | MD02G1037500.v1.1 MD15G1120300.v1.1 MD15G1177700.v1.1 |
| prunus_persica | Prupe.1G473000_v2.0.a1 |
| pyrus_communis | pycom02g03070 pycom15g10830 pycom15g15910 |
| rosa_chinensis | RchiOBHm_Chr2g0089391 RchiOBHm_Chr6g0298641 |
| rosa_laevigata | RLG00000011497 RLG00000016023 |
| rosa_multiflora | Rmu_sc0000197.1_g000022 Rmu_sc0008099.1_g000010 Rmu_sc0023149.1_g000001 Rmu_sc0031564.1_g000001 Rmu_sc0034903.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00152000 Rroxscaffold_7G00169460 |
| rosa_rugosa | Rorug02G0000100 Rorug02G0000200 Rorug06G0281800 |
| rosa_samantha | Rh2AG045500 Rh2BG044000 Rh2CG045900 Rh2DG045400 Rh6AG393300 Rh6BG401100 Rh6CG407000 Rh6DG393700 |
| rosa_wichuraiana | Rw2G003710 Rw6G034390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 506 |
| Acc36I | ACCTGC | 3 cut(s) | 388, 403, 506 |
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 137 |
| AciI | CCGC | 4 cut(s) | 187, 228, 288, 620 |
| AclWI | GGATC | 1 cut(s) | 178 |
| AcsI | RAATTY | 2 cut(s) | 110, 221 |
| AfaI | GTAC | 1 cut(s) | 446 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 499 |
| AgsI | TTSAA | 1 cut(s) | 662 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 120, 152 |
| AleI | CACNNNNGTG | 1 cut(s) | 86 |
| AluBI | AGCT | 4 cut(s) | 39, 46, 511, 610 |
| AluI | AGCT | 4 cut(s) | 39, 46, 511, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 573 |
| Alw26I | GTCTC | 1 cut(s) | 549 |
| Alw44I | GTGCAC | 1 cut(s) | 569 |
| AlwI | GGATC | 1 cut(s) | 178 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 623 |
| AoxI | GGCC | 1 cut(s) | 549 |
| ApaLI | GTGCAC | 1 cut(s) | 569 |
| ApeKI | GCWGC | 2 cut(s) | 584, 623 |
| ApoI | RAATTY | 2 cut(s) | 110, 221 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 488 |
| AspS9I | GGNCC | 1 cut(s) | 550 |
| AsuHPI | GGTGA | 3 cut(s) | 119, 409, 530 |
| BaeGI | GKGCMC | 1 cut(s) | 573 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BbsI | GAAGAC | 1 cut(s) | 224 |
| Bbv12I | GWGCWC | 1 cut(s) | 573 |
| BbvI | GCAGC | 2 cut(s) | 571, 610 |
| BccI | CCATC | 2 cut(s) | 56, 233 |
| BceAI | ACGGC | 1 cut(s) | 321 |
| BcoDI | GTCTC | 1 cut(s) | 549 |
| BfaI | CTAG | 1 cut(s) | 291 |
| BfmI | CTRYAG | 1 cut(s) | 440 |
| BfuAI | ACCTGC | 3 cut(s) | 388, 403, 506 |
| BisI | GCNGC | 3 cut(s) | 585, 621, 624 |
| BlsI | GCNGC | 3 cut(s) | 586, 622, 625 |
| BmcAI | AGTACT | 1 cut(s) | 446 |
| BmgT120I | GGNCC | 1 cut(s) | 550 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmsI | GCATC | 3 cut(s) | 106, 511, 623 |
| BpiI | GAAGAC | 1 cut(s) | 224 |
| BpmI | CTGGAG | 1 cut(s) | 546 |
| BsaBI | GATNNNNATC | 1 cut(s) | 525 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 499 |
| Bse1I | ACTGG | 3 cut(s) | 76, 109, 162 |
| Bse3DI | GCAATG | 1 cut(s) | 266 |
| Bse8I | GATNNNNATC | 1 cut(s) | 525 |
| BseGI | GGATG | 2 cut(s) | 151, 351 |
| BseJI | GATNNNNATC | 1 cut(s) | 525 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 499 |
| BseMI | GCAATG | 1 cut(s) | 266 |
| BseNI | ACTGG | 3 cut(s) | 76, 109, 162 |
| BseRI | GAGGAG | 1 cut(s) | 549 |
| BseSI | GKGCMC | 1 cut(s) | 573 |
| BseXI | GCAGC | 2 cut(s) | 571, 610 |
| BseYI | CCCAGC | 3 cut(s) | 198, 209, 627 |
| BshFI | GGCC | 1 cut(s) | 551 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 573 |
| BsiSI | CCGG | 1 cut(s) | 548 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 499 |
| BsmAI | GTCTC | 1 cut(s) | 549 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 1 cut(s) | 551 |
| Bsp1286I | GDGCHC | 1 cut(s) | 573 |
| Bsp143I | GATC | 2 cut(s) | 183, 328 |
| BspACI | CCGC | 4 cut(s) | 187, 228, 288, 620 |
| BspANI | GGCC | 1 cut(s) | 551 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspMAI | CTGCAG | 1 cut(s) | 444 |
| BspMI | ACCTGC | 3 cut(s) | 388, 403, 506 |
| BspPI | GGATC | 1 cut(s) | 178 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 266 |
| BsrI | ACTGG | 3 cut(s) | 76, 109, 162 |
| BssMI | GATC | 2 cut(s) | 183, 328 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 326 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 639 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 521 |
| BstC8I | GCNNGC | 2 cut(s) | 513, 612 |
| BstEII | GGTNACC | 1 cut(s) | 415 |
| BstF5I | GGATG | 2 cut(s) | 151, 351 |
| BstKTI | GATC | 2 cut(s) | 186, 331 |
| BstMAI | GTCTC | 1 cut(s) | 549 |
| BstMBI | GATC | 2 cut(s) | 183, 328 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 66, 195, 521, 611, 620 |
| BstPI | GGTNACC | 1 cut(s) | 415 |
| BstSFI | CTRYAG | 1 cut(s) | 440 |
| BstSLI | GKGCMC | 1 cut(s) | 573 |
| BstV1I | GCAGC | 2 cut(s) | 571, 610 |
| BstV2I | GAAGAC | 1 cut(s) | 224 |
| BstX2I | RGATCY | 1 cut(s) | 183 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 142 |
| BstYI | RGATCY | 1 cut(s) | 183 |
| BsuRI | GGCC | 1 cut(s) | 551 |
| BtgZI | GCGATG | 1 cut(s) | 75 |
| BtsCI | GGATG | 2 cut(s) | 151, 351 |
| BtsI | GCAGTG | 1 cut(s) | 204 |
| BtsIMutI | CAGTG | 4 cut(s) | 69, 102, 155, 204 |
| BveI | ACCTGC | 3 cut(s) | 388, 403, 506 |
| Cac8I | GCNNGC | 2 cut(s) | 513, 612 |
| CaiI | CAGNNNCTG | 1 cut(s) | 623 |
| Cfr13I | GGNCC | 1 cut(s) | 550 |
| Csp6I | GTAC | 1 cut(s) | 445 |
| CviAII | CATG | 5 cut(s) | 254, 274, 318, 580, 599 |
| CviQI | GTAC | 1 cut(s) | 445 |
| DpnI | GATC | 2 cut(s) | 185, 330 |
| DpnII | GATC | 2 cut(s) | 183, 328 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 639 |
| EarI | CTCTTC | 2 cut(s) | 86, 639 |
| Eco32I | GATATC | 1 cut(s) | 456 |
| Eco91I | GGTNACC | 1 cut(s) | 415 |
| EcoO65I | GGTNACC | 1 cut(s) | 415 |
| EcoRI | GAATTC | 1 cut(s) | 110 |
| EcoRV | GATATC | 1 cut(s) | 456 |
| FaeI | CATG | 5 cut(s) | 257, 277, 321, 583, 602 |
| FaiI | YATR | 8 cut(s) | 255, 275, 301, 319, 334, 450, 581, 600 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 173, 205, 594, 626 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 5 cut(s) | 253, 273, 317, 579, 598 |
| Fnu4HI | GCNGC | 3 cut(s) | 585, 621, 624 |
| FokI | GGATG | 2 cut(s) | 138, 338 |
| Fsp4HI | GCNGC | 3 cut(s) | 585, 621, 624 |
| FspBI | CTAG | 1 cut(s) | 291 |
| GluI | GCNGC | 3 cut(s) | 585, 621, 624 |
| GsaI | CCCAGC | 3 cut(s) | 202, 213, 631 |
| GsuI | CTGGAG | 1 cut(s) | 546 |
| HaeIII | GGCC | 1 cut(s) | 551 |
| HapII | CCGG | 1 cut(s) | 548 |
| Hin1II | CATG | 5 cut(s) | 257, 277, 321, 583, 602 |
| HincII | GTYRAC | 1 cut(s) | 297 |
| HindII | GTYRAC | 1 cut(s) | 297 |
| HindIII | AAGCTT | 1 cut(s) | 509 |
| HinfI | GANTC | 2 cut(s) | 436, 542 |
| HpaII | CCGG | 1 cut(s) | 548 |
| HphI | GGTGA | 3 cut(s) | 119, 409, 530 |
| Hpy166II | GTNNAC | 2 cut(s) | 297, 571 |
| Hpy188I | TCNGA | 1 cut(s) | 36 |
| Hpy188III | TCNNGA | 5 cut(s) | 88, 115, 236, 563, 638 |
| Hpy8I | GTNNAC | 2 cut(s) | 297, 571 |
| HpyAV | CCTTC | 2 cut(s) | 430, 499 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 326 |
| HpyCH4V | TGCA | 6 cut(s) | 266, 442, 515, 524, 571, 614 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 66, 195, 521, 611, 620 |
| Hsp92II | CATG | 5 cut(s) | 257, 277, 321, 583, 602 |
| Kzo9I | GATC | 2 cut(s) | 183, 328 |
| LmnI | GCTCC | 1 cut(s) | 562 |
| Lsp1109I | GCAGC | 2 cut(s) | 571, 610 |
| LweI | GCATC | 3 cut(s) | 106, 511, 623 |
| MaeI | CTAG | 1 cut(s) | 291 |
| MaeIII | GTNAC | 3 cut(s) | 242, 283, 415 |
| MalI | GATC | 2 cut(s) | 185, 330 |
| MboI | GATC | 2 cut(s) | 183, 328 |
| MboII | GAAGA | 8 cut(s) | 103, 130, 157, 224, 400, 445, 521, 626 |
| MflI | RGATCY | 1 cut(s) | 183 |
| MhlI | GDGCHC | 1 cut(s) | 573 |
| MluCI | AATT | 3 cut(s) | 110, 172, 221 |
| MlyI | GAGTC | 1 cut(s) | 551 |
| MnlI | CCTC | 8 cut(s) | 59, 87, 139, 498, 503, 570, 642, 646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 488 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 2 cut(s) | 86, 140 |
| MspA1I | CMGCKG | 1 cut(s) | 620 |
| MspI | CCGG | 1 cut(s) | 548 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 66, 195, 521, 611, 620 |
| NdeII | GATC | 2 cut(s) | 183, 328 |
| NlaIII | CATG | 5 cut(s) | 257, 277, 321, 583, 602 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NmeAIII | GCCGAG | 1 cut(s) | 631 |
| NmuCI | GTSAC | 1 cut(s) | 415 |
| OliI | CACNNNNGTG | 1 cut(s) | 86 |
| PaqCI | CACCTGC | 1 cut(s) | 506 |
| PdmI | GAANNNNTTC | 1 cut(s) | 488 |
| PfeI | GAWTC | 1 cut(s) | 436 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 137 |
| PkrI | GCNGC | 3 cut(s) | 586, 622, 625 |
| PleI | GAGTC | 1 cut(s) | 550 |
| PpsI | GAGTC | 1 cut(s) | 550 |
| PspEI | GGTNACC | 1 cut(s) | 415 |
| PspFI | CCCAGC | 3 cut(s) | 198, 209, 627 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 1 cut(s) | 550 |
| PstI | CTGCAG | 1 cut(s) | 444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 623 |
| PsuI | RGATCY | 1 cut(s) | 183 |
| RsaI | GTAC | 1 cut(s) | 446 |
| RsaNI | GTAC | 1 cut(s) | 445 |
| RseI | CAYNNNNRTG | 2 cut(s) | 86, 140 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 3 cut(s) | 585, 621, 624 |
| Sau3AI | GATC | 2 cut(s) | 183, 328 |
| Sau96I | GGNCC | 1 cut(s) | 550 |
| ScaI | AGTACT | 1 cut(s) | 446 |
| SchI | GAGTC | 1 cut(s) | 551 |
| SduI | GDGCHC | 1 cut(s) | 573 |
| SfaNI | GCATC | 3 cut(s) | 106, 511, 623 |
| SfcI | CTRYAG | 1 cut(s) | 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 86, 140 |
| Sse9I | AATT | 3 cut(s) | 110, 172, 221 |
| SsiI | CCGC | 4 cut(s) | 187, 228, 288, 620 |
| SspMI | CTAG | 1 cut(s) | 291 |
| TaaI | ACNGT | 2 cut(s) | 25, 326 |
| TaqI | TCGA | 2 cut(s) | 114, 540 |
| TasI | AATT | 3 cut(s) | 110, 172, 221 |
| TatI | WGTACW | 1 cut(s) | 444 |
| TauI | GCSGC | 1 cut(s) | 623 |
| TfiI | GAWTC | 1 cut(s) | 436 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TscAI | CASTG | 4 cut(s) | 76, 109, 162, 211 |
| TseFI | GTSAC | 1 cut(s) | 415 |
| TseI | GCWGC | 2 cut(s) | 584, 623 |
| Tsp45I | GTSAC | 1 cut(s) | 415 |
| TspDTI | ATGAA | 4 cut(s) | 140, 242, 521, 615 |
| TspRI | CASTG | 4 cut(s) | 76, 109, 162, 211 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 137 |
| VneI | GTGCAC | 1 cut(s) | 569 |
| XapI | RAATTY | 2 cut(s) | 110, 221 |
| XmnI | GAANNNNTTC | 1 cut(s) | 488 |
| XspI | CTAG | 1 cut(s) | 291 |
| ZrmI | AGTACT | 1 cut(s) | 446 |