Rroxscaffold_7G00169460

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003531
Physical Location & Seq
Forward (+)
10092077 .. 10094202
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169460.1

Sequence Viewer

Length: 666 bp
ATGGCTCTTCCGAATCAGCCGACTGTGGATTACCCTAGCTTCAAGCTCGTCATCGTCGGCGACGGCGGAACCGGGAAGACTACTTTTGTGAAGCGCCATCTGACTGGAGAGTTCGAGAAGAAATACGAACCGACGATCGGTGTCGAAGTTCATCCCTTGGATTTCCACACCAACTGTGGGAAGATCAGATTCTACTGCTGGGACACGGCTGGTCAGGAGAAGTTCGGTGGACTCAGAGACGGATACTATATTCACGGACAGTGTGCCATTATCATGTTTGATGTGACTGCTCGTTTGACATACAAGAATGTCCCGACATGGCACCGTGACCTGTGCAGGGTATGTGAGAACATTCCGATTGTTTTGTGCGGAAACAAGGTGGATGTAAAGAATAGGCAGGTGAAAGCAAAGCAGGTTACCTTTCATAGGAAGAAAAATCTCCAGTACTATGAAATCTCTGCCAAGAGCAATTACAACTTTGAGAAACCTTTCTTGTACCTTGCCAGAAAGCTTGCAGGAAATATGGATGTGGTCTTTGTTGAATCACCTGCTCTTGCTCCTCCAGAGGTTCATATTGATGTGGCTGAACAGACAAAGCTTGAAGAGGAATTGGAAAGGGTTAAACACCAACCACTTCCTGATGATGATGATGATCTGTTCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0030054 GO:0030312 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055044 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169
Pfam Domains
Protein Families
Ras

Protein Analysis

221

Amino Acids

25.38

Weight (kDa)

6.45

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 139 9.9e-11 ADP-ribosylation factor family
Ras PF00071 15 - 171 5.2e-48 Ras family
Roc PF08477 15 - 128 1.7e-30 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 388, 556
Acc36I ACCTGC 3 cut(s) 388, 403, 556
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 2 cut(s) 66, 369
AfaI GTAC 2 cut(s) 446, 497
AfiI CCNNNNNNNGG 4 cut(s) 137, 177, 337, 426
AgsI TTSAA 3 cut(s) 43, 542, 602
AluBI AGCT 4 cut(s) 39, 46, 511, 598
AluI AGCT 4 cut(s) 39, 46, 511, 598
Alw26I GTCTC 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 96
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 412, 537
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 1 cut(s) 105
BceAI ACGGC 2 cut(s) 79, 222
BciVI GTATCC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 2 cut(s) 36, 664
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 3 cut(s) 388, 403, 556
BfuI GTATCC 1 cut(s) 236
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 70, 323
BmrFI CCNGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 3 cut(s) 126, 425, 546
BpuMI CCSGG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 177, 337, 426
Bse1I ACTGG 2 cut(s) 109, 442
Bse8I GATNNNNATC 1 cut(s) 651
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 151, 388, 532
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 4 cut(s) 137, 177, 337, 426
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 109, 442
BseRI GAGGAG 1 cut(s) 549
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 355
Bsh1285I CGRYCG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 215, 296
BslI CCNNNNNNNGG 4 cut(s) 137, 177, 337, 426
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 215, 296
Bsp143I GATC 3 cut(s) 135, 183, 652
BspACI CCGC 2 cut(s) 66, 369
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 70, 323
BspMI ACCTGC 3 cut(s) 388, 403, 556
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 321
BsrI ACTGG 2 cut(s) 109, 442
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 135, 183, 652
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 25, 176, 261, 326
Bst6I CTCTTC 2 cut(s) 12, 597
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 233
BstEII GGTNACC 1 cut(s) 415
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 3 cut(s) 151, 388, 532
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 138, 186, 655
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 135, 183, 652
BstMCI CGRYCG 1 cut(s) 138
BstPI GGTNACC 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuI GTATCC 1 cut(s) 236
BtsCI GGATG 3 cut(s) 151, 388, 532
BtsIMutI CAGTG 1 cut(s) 266
BveI ACCTGC 3 cut(s) 388, 403, 556
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 445, 496
CviAII CATG 2 cut(s) 274, 318
CviJI RGCY 8 cut(s) 5, 19, 39, 46, 209, 511, 584, 598
CviKI_1 RGCY 8 cut(s) 5, 19, 39, 46, 209, 511, 584, 598
CviQI GTAC 2 cut(s) 445, 496
DdeI CTNAG 1 cut(s) 233
DpnI GATC 3 cut(s) 137, 185, 654
DpnII GATC 3 cut(s) 135, 183, 652
Eam1104I CTCTTC 2 cut(s) 12, 597
EarI CTCTTC 2 cut(s) 12, 597
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 415
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 2 cut(s) 277, 321
FaiI YATR 9 cut(s) 249, 275, 301, 319, 343, 426, 450, 524, 573
FaqI GGGAC 2 cut(s) 215, 296
FatI CATG 2 cut(s) 273, 317
FokI GGATG 3 cut(s) 138, 395, 539
FspBI CTAG 2 cut(s) 36, 664
GlaI GCGC 1 cut(s) 95
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 3 cut(s) 126, 425, 546
HaeII RGCGCY 1 cut(s) 97
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 96
Hin1II CATG 2 cut(s) 277, 321
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 509, 596
HinfI GANTC 4 cut(s) 13, 189, 231, 542
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 412, 537
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 5 cut(s) 12, 102, 188, 236, 357
Hpy188III TCNNGA 5 cut(s) 115, 215, 313, 563, 638
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 3 cut(s) 59, 65, 136
HpyCH4III ACNGT 4 cut(s) 25, 176, 261, 326
HpyCH4V TGCA 2 cut(s) 336, 515
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 2 cut(s) 277, 321
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 135, 183, 652
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 562
MaeI CTAG 2 cut(s) 36, 664
MaeIII GTNAC 3 cut(s) 283, 326, 415
MalI GATC 3 cut(s) 137, 185, 654
MboI GATC 3 cut(s) 135, 183, 652
MboII GAAGA 5 cut(s) 88, 130, 193, 442, 614
MluCI AATT 2 cut(s) 469, 608
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 3 cut(s) 559, 570, 598
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 272, 576
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 135, 183, 652
NlaIII CATG 2 cut(s) 277, 321
NlaIV GGNNCC 2 cut(s) 70, 323
NmuCI GTSAC 2 cut(s) 283, 326
PaqCI CACCTGC 2 cut(s) 388, 556
PciSI GCTCTTC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 13, 189, 542
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 70, 323
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 2 cut(s) 446, 497
RsaNI GTAC 2 cut(s) 445, 496
RseI CAYNNNNRTG 2 cut(s) 272, 576
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 621
Sau3AI GATC 3 cut(s) 135, 183, 652
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 272, 576
Sse9I AATT 2 cut(s) 469, 608
SsiI CCGC 2 cut(s) 66, 369
SspMI CTAG 2 cut(s) 36, 664
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 4 cut(s) 25, 176, 261, 326
TaqI TCGA 3 cut(s) 114, 144, 660
TasI AATT 2 cut(s) 469, 608
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 3 cut(s) 13, 189, 542
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 2 cut(s) 283, 326
Tsp45I GTSAC 2 cut(s) 283, 326
TspDTI ATGAA 4 cut(s) 140, 413, 465, 560
TspGWI ACGGA 2 cut(s) 255, 270
TspRI CASTG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 36, 664
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.