pycom15g15920

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
11098465 .. 11099750
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15920.2

Sequence Viewer

Length: 249 bp
ATGGCCTCCTGGCCCGCCTCGTCCGACTCCTCTAATCAGGAGGCCGCTGCCGCAATCAGAAAGAGAAAACCGGGGCATCAAATCAAGTTCTTGATTCCTCTTATATACGCCCCTGTTCTTCCCCTCATTCGACTGTCGTTGCGGAGGAACCCGGTTGTGCGGGACCGTTTGTTTACTGCCGTGCTGGTTGGAGCATTTGCTCATGGCTTTTATTTGGTAACTGATCTGTATGATGTTGAGAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.16

Weight (kDa)

10.1

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012355)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 15, 45, 51, 142, 160
AjnI CCWGG 1 cut(s) 8
AoxI GGCC 3 cut(s) 3, 11, 42
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 12, 163
AsuC2I CCSGG 2 cut(s) 72, 152
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 10
BcnI CCSGG 2 cut(s) 72, 152
BisI GCNGC 3 cut(s) 45, 48, 51
BlsI GCNGC 3 cut(s) 46, 49, 52
Bme1390I CCNGG 3 cut(s) 10, 72, 152
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 12, 163
BmiI GGNNCC 2 cut(s) 149, 164
BmrFI CCNGG 3 cut(s) 10, 72, 152
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 72, 152
BsaJI CCNNGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 3 cut(s) 5, 13, 44
BsiSI CCGG 2 cut(s) 71, 152
BslFI GGGAC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 5, 13, 44
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 5 cut(s) 15, 45, 51, 142, 160
BspANI GGCC 3 cut(s) 5, 13, 44
BspLI GGNNCC 2 cut(s) 149, 164
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 135, 167
BstC8I GCNNGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 3 cut(s) 8, 70, 150
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 5, 13, 44
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 12, 163
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 5, 13, 44, 207
CviKI_1 RGCY 4 cut(s) 5, 13, 44, 207
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 206
FaiI YATR 4 cut(s) 104, 106, 204, 231
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 202
FauI CCCGC 2 cut(s) 22, 153
Fnu4HI GCNGC 3 cut(s) 45, 48, 51
Fsp4HI GCNGC 3 cut(s) 45, 48, 51
GluI GCNGC 3 cut(s) 45, 48, 51
HaeIII GGCC 3 cut(s) 5, 13, 44
HapII CCGG 2 cut(s) 71, 152
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 26, 94
HpaII CCGG 2 cut(s) 71, 152
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 25, 59
Hpy188III TCNNGA 2 cut(s) 38, 91
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4III ACNGT 2 cut(s) 135, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 22, 23, 84, 126, 165, 170
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 48, 169
MnlI CCTC 7 cut(s) 16, 28, 34, 40, 108, 134, 138
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 71, 152
MspR9I CCNGG 3 cut(s) 10, 72, 152
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 2 cut(s) 72, 152
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 149, 164
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 3 cut(s) 46, 49, 52
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 149, 164
PspPI GGNCC 2 cut(s) 12, 163
SatI GCNGC 3 cut(s) 45, 48, 51
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 12, 163
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 10, 72, 152
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 163
SsiI CCGC 5 cut(s) 15, 45, 51, 142, 160
StyD4I CCNGG 3 cut(s) 8, 70, 150
TaaI ACNGT 2 cut(s) 135, 167
TaqI TCGA 1 cut(s) 130
TauI GCSGC 2 cut(s) 47, 53
TfiI GAWTC 1 cut(s) 94
TseI GCWGC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.