Rh7AG410300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012355
Physical Location & Seq
Reverse (-)
54812949 .. 54814964
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG410300.1

Sequence Viewer

Length: 267 bp
ATGGCCACCTGGCCCTCCTCATCCGATCCTTCTAATCAGGAGGTTGTTGCAATATGGAAGAGAAACAAGTCTGATCAAATTAAGTTCTTGATTCCTCTCATCTACACCCCTGTTCTTCCCCTCAATCGGCTCACAATGAGGAAGAATCCGGTTGTGCGGGGGGACTGTTTGTTTACTGCTGTGTTGGTTGGAGCATTTGCTCATGGCTCTTATTTGGTGACGGATCTTTATGATCTCGAGAGCAAATCTGGCCTCTCGAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.89

Weight (kDa)

9.3

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68680
fragaria_vesca FvH4_1g03930 FvH4_1g03930
malus_domestica MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica Prupe.7G237700_v2.0.a1
pyrus_communis pycom02g03080 pycom15g15920
rosa_chinensis RchiOBHm_Chr2g0089401
rosa_multiflora Rmu_sc0000197.1_g000021
rosa_roxburghii Rroxscaffold_2G00151990
rosa_rugosa Rorug02G0000200
rosa_samantha Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 2 cut(s) 20, 231
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 126
AjnI CCWGG 1 cut(s) 8
AlwI GGATC 2 cut(s) 20, 231
Ama87I CYCGRG 2 cut(s) 236, 256
AoxI GGCC 3 cut(s) 3, 11, 250
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 2 cut(s) 236, 256
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 10
BmeT110I CYCGRG 2 cut(s) 236, 256
BmgT120I GGNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 7
BshFI GGCC 3 cut(s) 5, 13, 252
BsiHKCI CYCGRG 2 cut(s) 236, 256
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 5, 13, 252
BsoBI CYCGRG 2 cut(s) 236, 256
Bsp143I GATC 4 cut(s) 25, 73, 223, 232
BspACI CCGC 1 cut(s) 157
BspANI GGCC 3 cut(s) 5, 13, 252
BspPI GGATC 2 cut(s) 20, 231
BssMI GATC 4 cut(s) 25, 73, 223, 232
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 4 cut(s) 28, 76, 226, 235
BstMBI GATC 4 cut(s) 25, 73, 223, 232
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 3 cut(s) 5, 13, 252
BtsCI GGATG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 12
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 5, 13, 130, 207, 252
CviKI_1 RGCY 5 cut(s) 5, 13, 130, 207, 252
DpnI GATC 4 cut(s) 27, 75, 225, 234
DpnII GATC 4 cut(s) 25, 73, 223, 232
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco88I CYCGRG 2 cut(s) 236, 256
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 55, 204, 231
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 150
FbaI TGATCA 1 cut(s) 73
FokI GGATG 1 cut(s) 7
HaeIII GGCC 3 cut(s) 5, 13, 252
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 91, 145
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 25, 73
Hpy188III TCNNGA 6 cut(s) 38, 88, 236, 238, 256, 258
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 25, 73, 223, 232
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 22, 23, 123, 162, 234
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 27, 75, 225, 234
MboI GATC 4 cut(s) 25, 73, 223, 232
MboII GAAGA 3 cut(s) 70, 107, 154
MflI RGATCY 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 78
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 7 cut(s) 25, 28, 34, 105, 131, 132, 263
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 4 cut(s) 25, 73, 223, 232
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 217
PaeR7I CTCGAG 2 cut(s) 236, 256
PfeI GAWTC 2 cut(s) 91, 145
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 223
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 4 cut(s) 25, 73, 223, 232
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 10
SetI ASST 2 cut(s) 11, 45
Sfr274I CTCGAG 2 cut(s) 236, 256
SlaI CTCGAG 2 cut(s) 236, 256
SmlI CTYRAG 2 cut(s) 236, 256
SmoI CTYRAG 2 cut(s) 236, 256
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 237, 257
TasI AATT 1 cut(s) 78
TfiI GAWTC 2 cut(s) 91, 145
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 236
XhoI CTCGAG 2 cut(s) 236, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.