Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0012355

Physical Location & Seq

Genomic Coordinates Reverse (-)

90086 .. 94358

Gene Structure 4273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggccacctggccctcctcatccgatccttctaatcaggaggctgttgcaataaggaagagaaacaagtctgatcaaattaagttcttgattcctctcatctacgcccctgttcttcccctcattcggctcacactgcggaagaatccggttgtgcgggaccgcttgtttactgctgtgttggttggagcatttgctcatggctcttatttggtgtatccttttattgatattgaattccgttatgattgttatactgcgaagaacagaacccactgcaaacccaaatcctcttcagatctcaaagcgatggccacctggccctcctcatccgatccttctaatcaggaagctgttgcaataaggaagagaaacaagtctgatcaaattaagttcttgattcctctcatctacgcccctgttcttcccctcattcggctcacactgcggaagaatccggttgtgcgggaccgcttgtttactgctgtgttggttggagcatttgctcatggctcttatttggtgacagatctttatgatatcgagagcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.85

Weight (kDa)

9.89

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68680
fragaria_vesca	FvH4_1g03930 FvH4_1g03930
malus_domestica	MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica	Prupe.7G237700_v2.0.a1
pyrus_communis	pycom02g03080 pycom15g15920
rosa_chinensis	RchiOBHm_Chr2g0089401
rosa_multiflora	Rmu_sc0000197.1_g000021
rosa_roxburghii	Rroxscaffold_2G00151990
rosa_rugosa	Rorug02G0000200
rosa_samantha	Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana	Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	139, 157, 163, 448, 466, 472
AclWI	GGATC	2 cut(s)	20, 329
AcoI	YGGCCR	2 cut(s)	3, 312
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	126, 435
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	8, 317
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
AlwI	GGATC	2 cut(s)	20, 329
AoxI	GGCC	4 cut(s)	3, 11, 312, 320
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	4 cut(s)	12, 160, 321, 469
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	2 cut(s)	160, 469
BalI	TGGCCA	2 cut(s)	5, 314
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	10, 319
BciVI	GTATCC	1 cut(s)	228
BclI	TGATCA	2 cut(s)	73, 382
BfuI	GTATCC	1 cut(s)	228
BglII	AGATCT	2 cut(s)	298, 529
Bme1390I	CCNGG	2 cut(s)	10, 319
Bme18I	GGWCC	2 cut(s)	160, 469
BmgT120I	GGNCC	4 cut(s)	12, 160, 321, 469
BmiI	GGNNCC	2 cut(s)	161, 470
BmrFI	CCNGG	2 cut(s)	10, 319
BsaWI	WCCGGW	2 cut(s)	148, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 435
BseBI	CCWGG	2 cut(s)	10, 319
BseGI	GGATG	2 cut(s)	20, 329
BseLI	CCNNNNNNNGG	2 cut(s)	126, 435
BseRI	GAGGAG	2 cut(s)	7, 316
BshFI	GGCC	4 cut(s)	5, 13, 314, 322
BsiSI	CCGG	2 cut(s)	149, 458
BslFI	GGGAC	2 cut(s)	173, 482
BslI	CCNNNNNNNGG	2 cut(s)	126, 435
BsmFI	GGGAC	2 cut(s)	173, 482
BsnI	GGCC	4 cut(s)	5, 13, 314, 322
Bsp143I	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
BspACI	CCGC	6 cut(s)	139, 157, 163, 448, 466, 472
BspANI	GGCC	4 cut(s)	5, 13, 314, 322
BspLI	GGNNCC	2 cut(s)	161, 470
BspPI	GGATC	2 cut(s)	20, 329
BssMI	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
Bst2UI	CCWGG	2 cut(s)	10, 319
Bst6I	CTCTTC	3 cut(s)	53, 298, 362
BstF5I	GGATG	2 cut(s)	20, 329
BstKTI	GATC	6 cut(s)	28, 76, 301, 337, 385, 532
BstMBI	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 445
BstNI	CCWGG	2 cut(s)	10, 319
BstSCI	CCNGG	2 cut(s)	8, 317
BstX2I	RGATCY	2 cut(s)	298, 529
BstYI	RGATCY	2 cut(s)	298, 529
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	5, 13, 314, 322
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	20, 329
BtsI	GCAGTG	3 cut(s)	134, 274, 443
BtsIMutI	CAGTG	3 cut(s)	134, 274, 443
Cfr13I	GGNCC	4 cut(s)	12, 160, 321, 469
CviAII	CATG	2 cut(s)	200, 509
DpnI	GATC	6 cut(s)	27, 75, 300, 336, 384, 531
DpnII	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
EaeI	YGGCCR	2 cut(s)	3, 312
Eam1104I	CTCTTC	3 cut(s)	53, 298, 362
EarI	CTCTTC	3 cut(s)	53, 298, 362
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	160, 469
Eco57I	CTGAAG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	8, 317
EcoRV	GATATC	1 cut(s)	541
FaeI	CATG	2 cut(s)	203, 512
FaiI	YATR	5 cut(s)	201, 246, 255, 510, 537
FaqI	GGGAC	2 cut(s)	173, 482
FatI	CATG	2 cut(s)	199, 508
FauI	CCCGC	2 cut(s)	150, 459
FbaI	TGATCA	2 cut(s)	73, 382
FokI	GGATG	2 cut(s)	7, 316
HaeIII	GGCC	4 cut(s)	5, 13, 314, 322
HapII	CCGG	2 cut(s)	149, 458
Hin1II	CATG	2 cut(s)	203, 512
HinfI	GANTC	4 cut(s)	91, 145, 400, 454
HpaII	CCGG	2 cut(s)	149, 458
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	2 cut(s)	171, 480
Hpy188I	TCNGA	5 cut(s)	25, 73, 298, 334, 382
Hpy188III	TCNNGA	5 cut(s)	38, 88, 347, 397, 544
Hpy8I	GTNNAC	2 cut(s)	171, 480
HpyAV	CCTTC	2 cut(s)	39, 348
HpyCH4V	TGCA	3 cut(s)	50, 279, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 445
Hsp92II	CATG	2 cut(s)	203, 512
Ksp22I	TGATCA	2 cut(s)	73, 382
Kzo9I	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
LmnI	GCTCC	2 cut(s)	188, 497
LpnPI	CCDG	9 cut(s)	22, 23, 123, 162, 304, 331, 332, 432, 471
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	6 cut(s)	27, 75, 300, 336, 384, 531
MboI	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
MboII	GAAGA	8 cut(s)	70, 107, 154, 274, 285, 379, 416, 463
MflI	RGATCY	2 cut(s)	298, 529
MlsI	TGGCCA	2 cut(s)	5, 314
MluCI	AATT	3 cut(s)	78, 236, 387
MluNI	TGGCCA	2 cut(s)	5, 314
MmeI	TCCRAC	2 cut(s)	166, 475
Mox20I	TGGCCA	2 cut(s)	5, 314
MscI	TGGCCA	2 cut(s)	5, 314
MseI	TTAA	2 cut(s)	81, 390
Msp20I	TGGCCA	2 cut(s)	5, 314
MspI	CCGG	2 cut(s)	149, 458
MspR9I	CCNGG	2 cut(s)	10, 319
MvaI	CCWGG	2 cut(s)	10, 319
MwoI	GCNNNNNNNGC	2 cut(s)	136, 445
NdeII	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
NlaIII	CATG	2 cut(s)	203, 512
NlaIV	GGNNCC	2 cut(s)	161, 470
NmuCI	GTSAC	1 cut(s)	523
PfeI	GAWTC	4 cut(s)	91, 145, 400, 454
Psp6I	CCWGG	2 cut(s)	8, 317
PspGI	CCWGG	2 cut(s)	8, 317
PspN4I	GGNNCC	2 cut(s)	161, 470
PspPI	GGNCC	4 cut(s)	12, 160, 321, 469
PsuI	RGATCY	2 cut(s)	298, 529
SaqAI	TTAA	2 cut(s)	81, 390
Sau3AI	GATC	6 cut(s)	25, 73, 298, 334, 382, 529
Sau96I	GGNCC	4 cut(s)	12, 160, 321, 469
ScrFI	CCNGG	2 cut(s)	10, 319
SetI	ASST	3 cut(s)	11, 320, 355
SinI	GGWCC	2 cut(s)	160, 469
Sse9I	AATT	3 cut(s)	78, 236, 387
SsiI	CCGC	6 cut(s)	139, 157, 163, 448, 466, 472
StyD4I	CCNGG	2 cut(s)	8, 317
TaqI	TCGA	1 cut(s)	543
TasI	AATT	3 cut(s)	78, 236, 387
TfiI	GAWTC	4 cut(s)	91, 145, 400, 454
Tru1I	TTAA	2 cut(s)	81, 390
Tru9I	TTAA	2 cut(s)	81, 390
TscAI	CASTG	3 cut(s)	141, 281, 450
TseFI	GTSAC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	523
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	3 cut(s)	141, 281, 450
VpaK11BI	GGWCC	2 cut(s)	160, 469
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.