Prupe.7G237700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012355
Physical Location & Seq
Reverse (-)
20571548 .. 20572768
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G237700.1

Sequence Viewer

Length: 273 bp
ATGGCCTCGTGGCCTTCATCGTCCGATCCCTCTAATCAGCAGGCTGCTATAAGAAAGAGAAGCCCGGGGTCCCAATTTAAGTTCTTGGTTCCTCTTATATATGCCCCTGTTCTTCCGCTCATTCGACTGTCGCTGCGTAAGAACCCAGTTGTACGGGACCGTTTGTTTACTGCTGTGTTGGTGGGAGCATTTGCTCATGGCTTTTATTTGGTAATCTATACTATAATGATGGAGCAGAAGGGGATGGTAAAGCACATTTCTTTCTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

10.71

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68680
fragaria_vesca FvH4_1g03930 FvH4_1g03930
malus_domestica MD02G1037600.v1.1 MD15G1177800.v1.1
prunus_persica Prupe.7G237700_v2.0.a1
pyrus_communis pycom02g03080 pycom15g15920
rosa_chinensis RchiOBHm_Chr2g0089401
rosa_multiflora Rmu_sc0000197.1_g000021
rosa_roxburghii Rroxscaffold_2G00151990
rosa_rugosa Rorug02G0000200
rosa_samantha Rh2AG045600 Rh2BG044100 Rh2CG046000 Rh2DG045500 Rh7AG410300
rosa_wichuraiana Rw2G003700 Rw6G035080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 2 cut(s) 44, 133
AspS9I GGNCC 2 cut(s) 69, 157
AsuC2I CCSGG 2 cut(s) 65, 66
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 2 cut(s) 69, 157
BauI CACGAG 1 cut(s) 7
BbvI GCAGC 2 cut(s) 31, 120
BccI CCATC 2 cut(s) 223, 238
BcnI CCSGG 2 cut(s) 65, 66
BisI GCNGC 2 cut(s) 45, 134
BlsI GCNGC 2 cut(s) 46, 135
Bme1390I CCNGG 2 cut(s) 65, 66
Bme18I GGWCC 2 cut(s) 69, 157
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 69, 157
BmiI GGNNCC 4 cut(s) 70, 71, 90, 158
BmrFI CCNGG 2 cut(s) 65, 66
BmrI ACTGGG 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 65, 66
BsaJI CCNNGG 2 cut(s) 64, 65
Bse1I ACTGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 64, 65
BseGI GGATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 31, 120
BshFI GGCC 2 cut(s) 5, 13
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 2 cut(s) 55, 170
BsmFI GGGAC 2 cut(s) 55, 170
BsnI GGCC 2 cut(s) 5, 13
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 116
BspANI GGCC 2 cut(s) 5, 13
BspLI GGNNCC 4 cut(s) 70, 71, 90, 158
BspPI GGATC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 64, 65
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 129, 161
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 63, 64
BstV1I GCAGC 2 cut(s) 31, 120
BsuRI GGCC 2 cut(s) 5, 13
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 69, 157
Cfr9I CCCGGG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 152
CviAII CATG 2 cut(s) 197, 270
CviJI RGCY 5 cut(s) 5, 13, 44, 63, 201
CviKI_1 RGCY 5 cut(s) 5, 13, 44, 63, 201
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 69, 157
Eco88I CYCGRG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 69
FaeI CATG 2 cut(s) 200, 273
FaiI YATR 8 cut(s) 50, 98, 100, 102, 198, 219, 224, 271
FaqI GGGAC 2 cut(s) 55, 170
FatI CATG 2 cut(s) 196, 269
Fnu4HI GCNGC 2 cut(s) 45, 134
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 45, 134
GluI GCNGC 2 cut(s) 45, 134
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 200, 273
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 24, 232
HpyCH4III ACNGT 2 cut(s) 129, 161
HpyCH4V TGCA 1 cut(s) 269
Hsp92II CATG 2 cut(s) 200, 273
KflI GGGWCCC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 185, 232
LpnPI CCDG 4 cut(s) 26, 78, 120, 159
Lsp1109I GCAGC 2 cut(s) 31, 120
MalI GATC 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 104
MluCI AATT 1 cut(s) 74
MnlI CCTC 3 cut(s) 16, 40, 102
MseI TTAA 1 cut(s) 78
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 66
NciI CCSGG 2 cut(s) 65, 66
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 200, 273
NlaIV GGNNCC 4 cut(s) 70, 71, 90, 158
PkrI GCNGC 2 cut(s) 46, 135
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 70, 71, 90, 158
PspPI GGNCC 2 cut(s) 69, 157
PspPPI RGGWCCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 45, 134
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 2 cut(s) 69, 157
ScrFI CCNGG 2 cut(s) 65, 66
SinI GGWCC 2 cut(s) 69, 157
SmaI CCCGGG 1 cut(s) 66
Sse9I AATT 1 cut(s) 74
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 63, 64
TaaI ACNGT 2 cut(s) 129, 161
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 74
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 2 cut(s) 44, 133
TspDTI ATGAA 1 cut(s) 6
TspMI CCCGGG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 69, 157
XmaI CCCGGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.