FvH4_1g05320

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014310
Physical Location & Seq
Forward (+)
2822830 .. 2824594
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05320.t1

Sequence Viewer

Length: 831 bp
ATGGTGTTAGAAACTAAGAGGCTTTCATCAGCCATGAACGCTAAAATTGTGGGCACAGGGAGTCAGTCCATAGTCCTAGCTCATGGCTATGGAGGAGACCAGTCTGTCTGGGACAAAGTCCTTCCTTACTTGGCTCAACATTACAGCGTTCTTGTTTTCGACTGGACCTTTTCGGGTGCTGCCAAGGACTCCAACCTCTTTGATCCTGCCAAATATTCGTGCTACGATGATTTTGCTCATGACTTGATTGCTCTCTTGGATGAACTTAACTTGAAATCCTCAGTCTATGTTGGCCACTCCATGTCTGCTATGGTTGGATGCATTGCTTCCATCAAGAGACCTGACCTCTTTAGCAGCCTCATACTCATTGGAGCTTCTCCTAGGTATTTGAATACAGATGACTATGAAGGTGGATTTGGGAGTTCAGATATTAAGCAAATCATCTCAAGCATAGAATCCAACTTCCATAACTGGGCCGCTCACTTTGCTTCCGTTGTTGTGGACTCAAAGGATCCTCTCTCTGTTGACAAGTTTACCAAGTGCCTGCAAAAAATGAGACCTGAAGTTGCAGTTTCTGTAGGAAAAATAGTCTTTTACAGTGACGAAAGAGACACACTTGACAATGTCTCAACTCCATGCACTATCATCCACACCAGCAGTGACATTGTCTCTCCAAAATCGGTCGCGGTTTACATGCAGAAGAAAATCAAGGGAAACCCCAAAGTGGAGATTATAAATACTAATGGCCATTTCCCACAGTTAACTGCACACAATGAGCTTCTTGATGTGCTAGGACTCATCTTGGGGGTTGAATTTGATCTTGATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

277

Amino Acids

30.28

Weight (kDa)

5.5

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 22 - 238 3.1e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 24 - 255 9.8e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 24 - 259 2.8e-13 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24420
fragaria_vesca FvH4_1g05320
malus_domestica MD02G1056400.v1.1 MD15G1189400.v1.1
prunus_persica Prupe.7G227500_v2.0.a1
pyrus_communis pycom02g04550 pycom15g16980
rosa_chinensis RchiOBHm_Chr2g0091021
rosa_laevigata RLG00000016167
rosa_multiflora Rmu_sc0003305.1_g000006
rosa_roxburghii Rroxscaffold_2G00150680
rosa_rugosa Rorug02G0011500
rosa_samantha Rh2AG057900 Rh2BG056200 Rh2CG058500 Rh2DG057600
rosa_wichuraiana Rw2G005140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 734
AasI GACNNNNNNGTC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 1 cut(s) 686
AciI CCGC 2 cut(s) 477, 686
AclWI GGATC 3 cut(s) 197, 506, 519
AcoI YGGCCR 2 cut(s) 292, 745
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 582
AfiI CCNNNNNNNGG 2 cut(s) 472, 724
AgsI TTSAA 3 cut(s) 274, 391, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 3 cut(s) 80, 374, 778
AluI AGCT 3 cut(s) 80, 374, 778
Alw26I GTCTC 6 cut(s) 90, 331, 550, 603, 631, 673
AlwI GGATC 3 cut(s) 197, 506, 519
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 3 cut(s) 292, 474, 745
ApeKI GCWGC 2 cut(s) 179, 354
ApoI RAATTY 1 cut(s) 812
AspA2I CCTAGG 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 165, 474
AvaII GGWCC 1 cut(s) 165
AvrII CCTAGG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 2 cut(s) 294, 747
BamHI GGATCC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 166, 366
BccI CCATC 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 6 cut(s) 90, 331, 550, 603, 631, 673
BfaI CTAG 3 cut(s) 77, 381, 791
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 3 cut(s) 180, 355, 477
BlnI CCTAGG 1 cut(s) 380
BlsI GCNGC 3 cut(s) 181, 356, 478
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 165, 474
BmiI GGNNCC 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 822
BsaI GGTCTC 3 cut(s) 90, 331, 550
BsaJI CCNNGG 2 cut(s) 183, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 724
Bse1I ACTGG 3 cut(s) 100, 167, 476
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 822
BseDI CCNNGG 2 cut(s) 183, 380
BseGI GGATG 3 cut(s) 265, 323, 645
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 472, 724
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 3 cut(s) 100, 167, 476
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 2 cut(s) 166, 366
BsgI GTGCAG 1 cut(s) 750
Bsh1236I CGCG 1 cut(s) 686
Bsh1285I CGRYCG 1 cut(s) 684
BshFI GGCC 3 cut(s) 294, 476, 747
BsiEI CGRYCG 1 cut(s) 684
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 472, 724
BsmAI GTCTC 6 cut(s) 90, 331, 550, 603, 631, 673
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 294, 476, 747
Bso31I GGTCTC 3 cut(s) 90, 331, 550
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 4 cut(s) 202, 511, 817, 823
BspACI CCGC 2 cut(s) 477, 686
BspANI GGCC 3 cut(s) 294, 476, 747
BspCNI CTCAG 1 cut(s) 293
BspFNI CGCG 1 cut(s) 686
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 3 cut(s) 197, 506, 519
BspTNI GGTCTC 3 cut(s) 90, 331, 550
BsrBI CCGCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 3 cut(s) 100, 167, 476
BssECI CCNNGG 2 cut(s) 183, 380
BssMI GATC 4 cut(s) 202, 511, 817, 823
BssT1I CCWWGG 2 cut(s) 183, 380
Bst4CI ACNGT 2 cut(s) 599, 759
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 15, 280
BstF5I GGATG 3 cut(s) 265, 323, 645
BstFNI CGCG 1 cut(s) 686
BstKTI GATC 4 cut(s) 205, 514, 820, 826
BstMAI GTCTC 6 cut(s) 90, 331, 550, 603, 631, 673
BstMBI GATC 4 cut(s) 202, 511, 817, 823
BstMCI CGRYCG 1 cut(s) 684
BstMWI GCNNNNNNNGC 2 cut(s) 38, 485
BstNSI RCATGY 1 cut(s) 697
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 166, 366
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 3 cut(s) 294, 476, 747
BtsCI GGATG 3 cut(s) 265, 323, 645
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 604, 664
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 165, 474
CviAII CATG 6 cut(s) 34, 83, 239, 301, 636, 694
DdeI CTNAG 2 cut(s) 15, 280
DpnI GATC 4 cut(s) 204, 513, 819, 825
DpnII GATC 4 cut(s) 202, 511, 817, 823
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 292, 745
Eco130I CCWWGG 2 cut(s) 183, 380
Eco31I GGTCTC 3 cut(s) 90, 331, 550
Eco47I GGWCC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 183, 380
EcoT22I ATGCAT 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 183, 380
FaeI CATG 6 cut(s) 37, 86, 242, 304, 639, 697
FaqI GGGAC 1 cut(s) 125
FatI CATG 6 cut(s) 33, 82, 238, 300, 635, 693
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 3 cut(s) 180, 355, 477
FokI GGATG 3 cut(s) 272, 330, 632
Fsp4HI GCNGC 3 cut(s) 180, 355, 477
FspBI CTAG 3 cut(s) 77, 381, 791
GluI GCNGC 3 cut(s) 180, 355, 477
HaeIII GGCC 3 cut(s) 294, 476, 747
Hin1II CATG 6 cut(s) 37, 86, 242, 304, 639, 697
HincII GTYRAC 2 cut(s) 526, 762
HindII GTYRAC 2 cut(s) 526, 762
HinfI GANTC 5 cut(s) 61, 188, 455, 503, 795
HpaI GTTAAC 1 cut(s) 762
Hpy166II GTNNAC 5 cut(s) 502, 526, 534, 691, 762
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 239, 334, 782, 821
Hpy8I GTNNAC 5 cut(s) 502, 526, 534, 691, 762
HpyAV CCTTC 2 cut(s) 131, 401
HpyCH4III ACNGT 2 cut(s) 599, 759
HpyCH4V TGCA 6 cut(s) 321, 547, 569, 639, 697, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 485
HpyF3I CTNAG 2 cut(s) 15, 280
Hsp92II CATG 6 cut(s) 37, 86, 242, 304, 639, 697
Ksp22I TGATCA 1 cut(s) 823
KspAI GTTAAC 1 cut(s) 762
Kzo9I GATC 4 cut(s) 202, 511, 817, 823
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 166, 366
LweI GCATC 1 cut(s) 308
MaeI CTAG 3 cut(s) 77, 381, 791
MaeIII GTNAC 2 cut(s) 599, 659
MalI GATC 4 cut(s) 204, 513, 819, 825
MbiI CCGCTC 1 cut(s) 479
MboI GATC 4 cut(s) 202, 511, 817, 823
MboII GAAGA 1 cut(s) 712
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 294, 747
MluCI AATT 2 cut(s) 45, 812
MluNI TGGCCA 2 cut(s) 294, 747
MlyI GAGTC 4 cut(s) 70, 182, 497, 789
MmeI TCCRAC 3 cut(s) 216, 295, 483
MnlI CCTC 7 cut(s) 12, 86, 206, 289, 356, 368, 525
Mox20I TGGCCA 2 cut(s) 294, 747
Mph1103I ATGCAT 1 cut(s) 323
MscI TGGCCA 2 cut(s) 294, 747
MseI TTAA 4 cut(s) 267, 432, 761, 829
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 2 cut(s) 294, 747
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 2 cut(s) 38, 485
NdeII GATC 4 cut(s) 202, 511, 817, 823
NlaIII CATG 6 cut(s) 37, 86, 242, 304, 639, 697
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 2 cut(s) 599, 659
NsiI ATGCAT 1 cut(s) 323
NspI RCATGY 1 cut(s) 697
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 3 cut(s) 116, 623, 665
PkrI GCNGC 3 cut(s) 181, 356, 478
PleI GAGTC 4 cut(s) 69, 182, 497, 789
PpsI GAGTC 4 cut(s) 69, 182, 497, 789
PsiI TTATAA 1 cut(s) 734
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 2 cut(s) 165, 474
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 511
PsyI GACNNNGTC 3 cut(s) 116, 623, 665
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 4 cut(s) 267, 432, 761, 829
SatI GCNGC 3 cut(s) 180, 355, 477
Sau3AI GATC 4 cut(s) 202, 511, 817, 823
Sau96I GGNCC 2 cut(s) 165, 474
SchI GAGTC 4 cut(s) 70, 182, 497, 789
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 308
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 2 cut(s) 45, 812
SsiI CCGC 2 cut(s) 477, 686
SspI AATATT 1 cut(s) 215
SspMI CTAG 3 cut(s) 77, 381, 791
StyI CCWWGG 2 cut(s) 183, 380
TaaI ACNGT 2 cut(s) 599, 759
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 670
TasI AATT 2 cut(s) 45, 812
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 4 cut(s) 267, 432, 761, 829
Tru9I TTAA 4 cut(s) 267, 432, 761, 829
TscAI CASTG 2 cut(s) 604, 664
TseFI GTSAC 2 cut(s) 599, 659
TseI GCWGC 2 cut(s) 179, 354
Tsp45I GTSAC 2 cut(s) 599, 659
TspDTI ATGAA 4 cut(s) 15, 50, 276, 420
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 604, 664
Tth111I GACNNNGTC 3 cut(s) 116, 623, 665
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 812
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmaJI CCTAGG 1 cut(s) 380
XspI CTAG 3 cut(s) 77, 381, 791
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.