Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014310

Physical Location & Seq

Genomic Coordinates Forward (+)

14944613 .. 14946567

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1189400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGCTAGAAAAAAACCTTTCGACCGCCATGAACGCAAGAATCGTGGGCTCGGGTGGTGAAGCGGTGGTTCTGGCACATGGTTACGGAGGAGACCAGTCTGTGTGGGACAAAATCGTGCCCTACTTGGCTCAGCTTTACCGTGTTCTTGTTTTCGACTGGCCTTTCTCCGGCGCTGTGAATAATAAGGAAGGTGATGACCTGAAACTGTTTGATCCAGCTGGGAAATATTCCTCCTATGACGCATTTGCCCTTCACCTAATTGCTCTCTTAGACGAGTTCAACCTAAAATCTACTGTCTTTGTTGGTCATTCCATGTCTGGTATGATTGGATGTATTGCTTCAGTTAAAAGACCTGACCTCTTTAAGTCCCTCATCCTCATTGGAGCTTCTCCTAGGTATATAAATATAGACGACTATGAAGGTGGGTTTGAGATGTCAGATATCACACAGATCATCTCAGCCATAGAATCCAACTATCACAACTGGGCTGCCAGCTTCGCCACACTTGCTGTGGGCACAAATGACCCTCTCTCGGTCGAAAAATTCGTCAAGTGCCTGCGCAGAATGAGGCCTGAAATTGCCCTCGCCTTGGCGAAAACCGTCTTTTACAGCGACCATAGAGACATTATAGACAAGGTCTCGACTCCATGCACCATCATCAGCACCAGCAGCGACATTGTTGCTCCAAAATCGGTTGCGTTCTACATGCAGAAGAAGATGAAGGAAAACCCTAATGTCAAGATTATAAATACAGACGGGCATTTCCCGCAGTTGACTGCACACCTTGAGCTTCTTGATGTGCTAGGACAAGTCTTGGGGCTTAAATTTGATCAAGATCCTTATATCATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

286

Amino Acids

31.42

Weight (kDa)

5.63

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	22 - 131	1.4e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	23 - 264	7e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24420
fragaria_vesca	FvH4_1g05320
malus_domestica	MD02G1056400.v1.1 MD15G1189400.v1.1
prunus_persica	Prupe.7G227500_v2.0.a1
pyrus_communis	pycom02g04550 pycom15g16980
rosa_chinensis	RchiOBHm_Chr2g0091021
rosa_laevigata	RLG00000016167
rosa_multiflora	Rmu_sc0003305.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150680
rosa_rugosa	Rorug02G0011500
rosa_samantha	Rh2AG057900 Rh2BG056200 Rh2CG058500 Rh2DG057600
rosa_wichuraiana	Rw2G005140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc16I	TGCGCA	1 cut(s)	563
AciI	CCGC	3 cut(s)	27, 65, 770
AclWI	GGATC	2 cut(s)	209, 833
AcsI	RAATTY	2 cut(s)	545, 827
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	170, 535, 592
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	5 cut(s)	136, 221, 389, 498, 793
AluI	AGCT	5 cut(s)	136, 221, 389, 498, 793
Alw26I	GTCTC	3 cut(s)	87, 618, 646
AlwI	GGATC	2 cut(s)	209, 833
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	161, 572
ApeKI	GCWGC	2 cut(s)	491, 672
ApoI	RAATTY	2 cut(s)	545, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	176, 564
AsuHPI	GGTGA	3 cut(s)	71, 206, 248
AvaI	CYCGRG	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	123, 521
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	478, 684
BccI	CCATC	1 cut(s)	665
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	87, 618, 646
BfaI	CTAG	3 cut(s)	8, 396, 806
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	2 cut(s)	492, 673
BlnI	CCTAGG	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	493, 674
BmeT110I	CYCGRG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	2 cut(s)	87, 646
BsaJI	CCNNGG	2 cut(s)	395, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 535, 592
Bse1I	ACTGG	3 cut(s)	97, 164, 491
Bse8I	GATNNNNATC	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	395, 591
BseGI	GGATG	2 cut(s)	338, 375
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	3 cut(s)	170, 535, 592
BseMII	CTCAG	2 cut(s)	146, 474
BseNI	ACTGG	3 cut(s)	97, 164, 491
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	2 cut(s)	123, 521
BseXI	GCAGC	2 cut(s)	478, 684
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	765
Bsh1285I	CGRYCG	2 cut(s)	27, 540
BshFI	GGCC	2 cut(s)	163, 574
BsiEI	CGRYCG	2 cut(s)	27, 540
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	122, 355
BslI	CCNNNNNNNGG	3 cut(s)	170, 535, 592
BsmAI	GTCTC	3 cut(s)	87, 618, 646
BsmFI	GGGAC	2 cut(s)	122, 355
BsnI	GGCC	2 cut(s)	163, 574
Bso31I	GGTCTC	2 cut(s)	87, 646
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	3 cut(s)	53, 123, 521
Bsp143I	GATC	4 cut(s)	214, 453, 832, 838
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	27, 65, 770
BspANI	GGCC	2 cut(s)	163, 574
BspCNI	CTCAG	2 cut(s)	145, 473
BspPI	GGATC	2 cut(s)	209, 833
BspTNI	GGTCTC	2 cut(s)	87, 646
BsrI	ACTGG	3 cut(s)	97, 164, 491
BssECI	CCNNGG	2 cut(s)	395, 591
BssMI	GATC	4 cut(s)	214, 453, 832, 838
BssT1I	CCWWGG	2 cut(s)	395, 591
Bst4CI	ACNGT	4 cut(s)	143, 210, 298, 604
BstC8I	GCNNGC	2 cut(s)	496, 560
BstDEI	CTNAG	3 cut(s)	132, 271, 460
BstF5I	GGATG	2 cut(s)	338, 375
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 564
BstKTI	GATC	4 cut(s)	217, 456, 835, 841
BstMAI	GTCTC	3 cut(s)	87, 618, 646
BstMBI	GATC	4 cut(s)	214, 453, 832, 838
BstMCI	CGRYCG	2 cut(s)	27, 540
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 500, 509, 672, 769
BstNSI	RCATGY	1 cut(s)	712
BstSLI	GKGCMC	2 cut(s)	123, 521
BstV1I	GCAGC	2 cut(s)	478, 684
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	163, 574
BtsCI	GGATG	2 cut(s)	338, 375
Cac8I	GCNNGC	2 cut(s)	496, 560
CfoI	GCGC	2 cut(s)	176, 564
CseI	GACGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	5 cut(s)	31, 80, 316, 651, 709
DdeI	CTNAG	3 cut(s)	132, 271, 460
DpnI	GATC	4 cut(s)	216, 455, 834, 840
DpnII	GATC	4 cut(s)	214, 453, 832, 838
Eco130I	CCWWGG	2 cut(s)	395, 591
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	2 cut(s)	87, 646
Eco32I	GATATC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	395, 591
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	395, 591
FaeI	CATG	5 cut(s)	34, 83, 319, 654, 712
FaqI	GGGAC	2 cut(s)	122, 355
FatI	CATG	5 cut(s)	30, 79, 315, 650, 708
FauI	CCCGC	1 cut(s)	777
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	492, 673
FokI	GGATG	2 cut(s)	345, 362
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	492, 673
FspBI	CTAG	3 cut(s)	8, 396, 806
FspI	TGCGCA	1 cut(s)	563
GlaI	GCGC	2 cut(s)	175, 563
GluI	GCNGC	2 cut(s)	492, 673
GsaI	CCCAGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	163, 574
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	176, 564
Hin1II	CATG	5 cut(s)	34, 83, 319, 654, 712
Hin6I	GCGC	2 cut(s)	174, 562
HinP1I	GCGC	2 cut(s)	174, 562
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	3 cut(s)	42, 470, 646
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	71, 206, 248
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	4 cut(s)	643, 742, 797, 836
Hpy8I	GTNNAC	1 cut(s)	777
HpyAV	CCTTC	4 cut(s)	185, 263, 416, 718
HpyCH4III	ACNGT	4 cut(s)	143, 210, 298, 604
HpyCH4V	TGCA	3 cut(s)	654, 712, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 500, 509, 672, 769
HpyF3I	CTNAG	3 cut(s)	132, 271, 460
Hsp92II	CATG	5 cut(s)	34, 83, 319, 654, 712
HspAI	GCGC	2 cut(s)	174, 562
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	4 cut(s)	214, 453, 832, 838
LmnI	GCTCC	2 cut(s)	386, 691
Lsp1109I	GCAGC	2 cut(s)	478, 684
MaeI	CTAG	3 cut(s)	8, 396, 806
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	4 cut(s)	216, 455, 834, 840
MboI	GATC	4 cut(s)	214, 453, 832, 838
MboII	GAAGA	2 cut(s)	727, 730
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	3 cut(s)	53, 123, 521
MluCI	AATT	4 cut(s)	261, 545, 579, 827
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	8 cut(s)	83, 244, 371, 383, 389, 540, 564, 596
MseI	TTAA	3 cut(s)	348, 366, 825
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	5 cut(s)	35, 500, 509, 672, 769
NdeII	GATC	4 cut(s)	214, 453, 832, 838
NlaIII	CATG	5 cut(s)	34, 83, 319, 654, 712
NsbI	TGCGCA	1 cut(s)	563
NspI	RCATGY	1 cut(s)	712
PceI	AGGCCT	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 546
PfeI	GAWTC	2 cut(s)	42, 470
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	2 cut(s)	493, 674
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PsiI	TTATAA	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	348, 366, 825
SatI	GCNGC	2 cut(s)	492, 673
Sau3AI	GATC	4 cut(s)	214, 453, 832, 838
SchI	GAGTC	1 cut(s)	640
SduI	GDGCHC	3 cut(s)	53, 123, 521
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	4 cut(s)	261, 545, 579, 827
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	3 cut(s)	27, 65, 770
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	3 cut(s)	8, 396, 806
StuI	AGGCCT	1 cut(s)	574
StyI	CCWWGG	2 cut(s)	395, 591
TaaI	ACNGT	4 cut(s)	143, 210, 298, 604
TaqI	TCGA	4 cut(s)	23, 156, 540, 644
TaqII	GACCGA	1 cut(s)	526
TasI	AATT	4 cut(s)	261, 545, 579, 827
TfiI	GAWTC	2 cut(s)	42, 470
Tru1I	TTAA	3 cut(s)	348, 366, 825
Tru9I	TTAA	3 cut(s)	348, 366, 825
TseI	GCWGC	2 cut(s)	491, 672
TspDTI	ATGAA	3 cut(s)	47, 435, 737
TspGWI	ACGGA	1 cut(s)	102
Tth111I	GACNNNGTC	1 cut(s)	638
XapI	RAATTY	2 cut(s)	545, 827
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmaJI	CCTAGG	1 cut(s)	395
XspI	CTAG	3 cut(s)	8, 396, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.