Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

3151537 .. 3153588

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAATTCCCAGTCGAATGGCCGCAGCCTGAGACCCAAAGGGAAGAGGGTAAAGCTGGCCTTTCAGATTGGGTCGGTTTTGGCTGTTTGCTTATGGTTGCTGTACCAAGCAAAGCAGTCTCATGATACGGACTACAGTGGAAGTGTACGCAATGAGGTAATTATAGAACGTGGTTCTGGTATTTTGGGGCGTAGAGTGAATGCAGGCGGTTCAAGTCTAGTGGGAGAAAGCGTAAATGATGAAGTTCGAGGTGGTGGAGTTGATGTATCAGATGGAAATGTTGAAGAGAAGCACAAAGCAAGTGATGATACTGATCATGGAGATCTTGGGAGACATGAAGGGAAAGAAAGTGAAAAAAGGGTGGGATTGAAATACAAAGAGTTGAGCAATGCTGATGATATTCCTGATATTAATAGTGAAGAGAATTCATTGCAAGAAGGAAACTCCCAGGTAGGACATCAAGATAAACAGGCGTCGAGGATGTCTGATCAGGAAGGTGAGAAAGATGTGGAGAATACTAGTCACCATAAAGTTGGAGGGGATGAGGATGCAATGTCACATGTTAATCATGATGAGCAAGGACATGAAAGTGATGCACAGAAGGAATCAGACACGAAGGACTTCAGTTCTGAAAATGAGTTTCTAGTTCCACCAACCGAAAGGAAGAATGATTCTCTTCAGGATCATAATTCAATGGTAGATGGAGTCCATGGCTTTGATGATGAGACTGGTGTTCCCGAAGATGGTAACGATATCATAGAATCAAGAGTGACTGAATCAAGTGGTGATAGAGAAATCAGTTTACATGAAGATATGTATACTACTTCAAGCAGGCAAAGTGAGATCAATGAAAGCACTCAAAGTGAAGAAGTTGTTGCTAGAGGAGATAATGCTAATTTTGAAGCCAGAAGCAATATCTCGGTACAAGATTCAGAACCCGAGGCAGAAACAAACTCCGAAACTAGTGTTCATATAGATACATCAAGGATCAATAGTACGAATGTAACTAAACAGGGAGGCACTTCAGTTTCAGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

37.77

Weight (kDa)

4.59

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	818
AciI	CCGC	2 cut(s)	22, 207
AclWI	GGATC	2 cut(s)	690, 995
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	4, 424
AcuI	CTGAAG	3 cut(s)	607, 662, 1008
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	4 cut(s)	104, 147, 924, 997
AfiI	CCNNNNNNNGG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	6 cut(s)	213, 284, 370, 693, 828, 902
AhlI	ACTAGT	2 cut(s)	518, 962
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	4 cut(s)	25, 123, 325, 719
AlwI	GGATC	2 cut(s)	690, 995
Ama87I	CYCGRG	1 cut(s)	938
AoxI	GGCC	2 cut(s)	19, 57
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	4, 424
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	620
AsuHPI	GGTGA	3 cut(s)	509, 515, 797
AvaI	CYCGRG	1 cut(s)	938
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	266, 695, 737
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	313, 487
BcoDI	GTCTC	4 cut(s)	25, 123, 325, 719
BcuI	ACTAGT	2 cut(s)	518, 962
BfaI	CTAG	5 cut(s)	218, 519, 644, 879, 963
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	2 cut(s)	322, 1033
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme1390I	CCNGG	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	938
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	538, 583
BmuI	ACTGGG	1 cut(s)	4
BsaBI	GATNNNNATC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	447, 709, 939
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	743
Bse1I	ACTGG	2 cut(s)	10, 733
Bse3DI	GCAATG	4 cut(s)	157, 394, 428, 558
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	447, 709, 939
BseGI	GGATG	3 cut(s)	486, 547, 553
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	743
BseMI	GCAATG	4 cut(s)	157, 394, 428, 558
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	10, 733
BseRI	GAGGAG	1 cut(s)	897
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	21, 59
BsiHKCI	CYCGRG	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	743
BsmAI	GTCTC	4 cut(s)	25, 123, 325, 719
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	21, 59
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	938
Bsp143I	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	2 cut(s)	22, 207
BspANI	GGCC	2 cut(s)	21, 59
BspCNI	CTCAG	1 cut(s)	21
BspHI	TCATGA	2 cut(s)	121, 568
BspPI	GGATC	2 cut(s)	690, 995
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	4 cut(s)	157, 394, 428, 558
BsrI	ACTGG	2 cut(s)	10, 733
BssECI	CCNNGG	3 cut(s)	447, 709, 939
BssMI	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
BssNAI	GTATAC	1 cut(s)	819
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	709
Bst1107I	GTATAC	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	4 cut(s)	38, 279, 414, 681
BstACI	GRCGYC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	57, 205, 833
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	3 cut(s)	486, 547, 553
BstKTI	GATC	7 cut(s)	316, 325, 490, 685, 846, 990, 1036
BstMAI	GTCTC	4 cut(s)	25, 123, 325, 719
BstMBI	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	322, 1033
BstXI	CCANNNNNNTGG	2 cut(s)	17, 533
BstYI	RGATCY	2 cut(s)	322, 1033
BstZ17I	GTATAC	1 cut(s)	819
BsuRI	GGCC	2 cut(s)	21, 59
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	486, 547, 553
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	57, 205, 833
CciI	TCATGA	2 cut(s)	121, 568
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	4 cut(s)	103, 146, 923, 996
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	8 cut(s)	122, 317, 335, 560, 569, 584, 710, 806
CviJI	RGCY	7 cut(s)	21, 27, 55, 59, 83, 714, 905
CviKI_1	RGCY	7 cut(s)	21, 27, 55, 59, 83, 714, 905
CviQI	GTAC	4 cut(s)	103, 146, 923, 996
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	7 cut(s)	315, 324, 489, 684, 845, 989, 1035
DpnII	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	4 cut(s)	38, 279, 414, 681
EarI	CTCTTC	4 cut(s)	38, 279, 414, 681
Eco130I	CCWWGG	1 cut(s)	709
Eco31I	GGTCTC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	754
Eco57I	CTGAAG	3 cut(s)	607, 662, 1008
Eco88I	CYCGRG	1 cut(s)	938
EcoRI	GAATTC	2 cut(s)	4, 424
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	8 cut(s)	125, 320, 338, 563, 572, 587, 713, 809
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	8 cut(s)	121, 316, 334, 559, 568, 583, 709, 805
FbaI	TGATCA	2 cut(s)	313, 487
FblI	GTMKAC	1 cut(s)	818
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	3 cut(s)	493, 554, 560
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	5 cut(s)	218, 519, 644, 879, 963
GluI	GCNGC	2 cut(s)	22, 25
HaeIII	GGCC	2 cut(s)	21, 59
HgaI	GACGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	8 cut(s)	125, 320, 338, 563, 572, 587, 713, 809
HinfI	GANTC	6 cut(s)	605, 671, 705, 761, 776, 929
HphI	GGTGA	3 cut(s)	509, 515, 797
Hpy166II	GTNNAC	3 cut(s)	146, 803, 819
Hpy188I	TCNGA	8 cut(s)	66, 271, 487, 610, 631, 934, 958, 1033
Hpy188III	TCNNGA	8 cut(s)	122, 404, 461, 491, 569, 680, 737, 765
Hpy8I	GTNNAC	3 cut(s)	146, 803, 819
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	5 cut(s)	332, 431, 488, 595, 610
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	203, 433, 551, 596
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	8 cut(s)	125, 320, 338, 563, 572, 587, 713, 809
Ksp22I	TGATCA	2 cut(s)	313, 487
Kzo9I	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	538, 583
MaeI	CTAG	5 cut(s)	218, 519, 644, 879, 963
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	5 cut(s)	521, 555, 746, 769, 1003
MalI	GATC	7 cut(s)	315, 324, 489, 684, 845, 989, 1035
MboI	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
MboII	GAAGA	8 cut(s)	55, 296, 431, 668, 676, 752, 821, 878
MflI	RGATCY	2 cut(s)	322, 1033
MluCI	AATT	5 cut(s)	4, 159, 424, 688, 895
MlyI	GAGTC	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	9 cut(s)	39, 148, 242, 471, 530, 538, 875, 934, 1010
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	3 cut(s)	411, 564, 1039
MslI	CAYNNNNRTG	1 cut(s)	588
MspR9I	CCNGG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
NlaIII	CATG	8 cut(s)	125, 320, 338, 563, 572, 587, 713, 809
NmuCI	GTSAC	3 cut(s)	521, 555, 769
NspI	RCATGY	1 cut(s)	563
PagI	TCATGA	2 cut(s)	121, 568
PciI	ACATGT	1 cut(s)	559
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	5 cut(s)	605, 671, 761, 776, 929
PkrI	GCNGC	2 cut(s)	23, 26
PleI	GAGTC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	713
PscI	ACATGT	1 cut(s)	559
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PsuI	RGATCY	2 cut(s)	322, 1033
RsaI	GTAC	4 cut(s)	104, 147, 924, 997
RsaNI	GTAC	4 cut(s)	103, 146, 923, 996
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	411, 564, 1039
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	7 cut(s)	313, 322, 487, 682, 843, 987, 1033
SchI	GAGTC	1 cut(s)	714
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	6 cut(s)	57, 159, 172, 253, 453, 499
SfaNI	GCATC	2 cut(s)	538, 583
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	588
SpeI	ACTAGT	2 cut(s)	518, 962
Sse9I	AATT	5 cut(s)	4, 159, 424, 688, 895
SsiI	CCGC	2 cut(s)	22, 207
SspMI	CTAG	5 cut(s)	218, 519, 644, 879, 963
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	14, 247, 476
TasI	AATT	5 cut(s)	4, 159, 424, 688, 895
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	5 cut(s)	605, 671, 761, 776, 929
Tru1I	TTAA	3 cut(s)	411, 564, 1039
Tru9I	TTAA	3 cut(s)	411, 564, 1039
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	3 cut(s)	521, 555, 769
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	3 cut(s)	521, 555, 769
TspDTI	ATGAA	8 cut(s)	17, 255, 351, 417, 600, 822, 864, 959
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	2 cut(s)	4, 424
XceI	RCATGY	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	818
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	5 cut(s)	218, 519, 644, 879, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.