Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

3300899 .. 3301705

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATAACCAGTCTACCGGGCGCAACCAGAGACCCGCCAAAGGGTTGAAGGTGAAACAGGCAATTCAGATTGCATTGATTTTGGCTGTTTGCTTCTGGTTGCTATACCAGATGAAGCAGTCACATGGCAAGGACTATAGTGAAAGTTCAAAGGACAAGGCTAGCGAAGAACGCGGTTCTGATATTTTAGGGCGTAAGGGGAGTGCAGGGTGGTCAAAAGTTGGAGCTGTGTCTGCATCAGAAGATCCAAAACATGTAGGAGAAGTAAGTGTAAAGAAAGAAGATGGTAATGTTGAAGAGAAAAATGAAGAAGAATCTTTGCAGAATGTAAATGAAGCGAATCAGGTTGAAAAGGAAACAGAAATTCAGAAAAAAGAATTGAACAATAAAGATGATAATTCTGAAGGTGAAGTTAAAGGAAATGCTGAATCGGTGGGGCTCGACAAGAGTTCTTCGCATGAAGAAAATTACCAAGAGGGGCATGAAGGTACGCAGGCAGTTTTCGCTGATCAAGATGGTGCGAAACATGTGAATCATGATGAAGTAGGAGAGCACAAGGAGCAAATACCACAAGATAAGCACGAGGAGCAAGAAAATGGAAAGGGACAAGCTAAGGAGCCAAAGAGATTGGAGGAATCTAGTACCACTGACAAGGAGCCAAAGAGTACTACATACGAGGACATTTCAGTACGACGCGATGAAAGTAAGAATGACTCTCTTGAGGGCCAAAATTCCGTGGTAGACGGAGTGGTCCATGGCTTTGATGATGTGAATGGCGTGCCAGTAGATGGCCATGATCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.59

Weight (kDa)

4.91

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccI	GTMKAC	2 cut(s)	14, 741
AccII	CGCG	2 cut(s)	174, 696
AciI	CCGC	2 cut(s)	36, 174
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	363, 730
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	4 cut(s)	490, 643, 667, 690
AfiI	CCNNNNNNNGG	3 cut(s)	41, 42, 788
AflIII	ACRYGT	2 cut(s)	253, 526
AgsI	TTSAA	5 cut(s)	49, 150, 296, 350, 382
AluBI	AGCT	2 cut(s)	227, 611
AluI	AGCT	2 cut(s)	227, 611
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	724, 790
ApoI	RAATTY	2 cut(s)	363, 730
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	724, 751
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	64, 419
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	555
BccI	CCATC	3 cut(s)	278, 509, 782
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	162, 639
BfmI	CTRYAG	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	724, 751
BmiI	GGNNCC	2 cut(s)	618, 657
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	245
BmtI	GCTAGC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	735, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 42, 788
Bse1I	ACTGG	2 cut(s)	10, 782
BseCI	ATCGAT	1 cut(s)	799
BseDI	CCNNGG	2 cut(s)	735, 754
BseLI	CCNNNNNNNGG	3 cut(s)	41, 42, 788
BseNI	ACTGG	2 cut(s)	10, 782
BseRI	GAGGAG	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	174, 696
BshFI	GGCC	2 cut(s)	726, 792
BshVI	ATCGAT	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	3 cut(s)	41, 42, 788
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	726, 792
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	441, 555
Bsp143I	GATC	4 cut(s)	244, 508, 796, 800
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	2 cut(s)	36, 174
BspANI	GGCC	2 cut(s)	726, 792
BspDI	ATCGAT	1 cut(s)	799
BspFNI	CGCG	2 cut(s)	174, 696
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	618, 657
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	10, 782
BssECI	CCNNGG	2 cut(s)	735, 754
BssMI	GATC	4 cut(s)	244, 508, 796, 800
BssSI	CACGAG	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	754
Bst2BI	CACGAG	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	163, 495, 779
BstDEI	CTNAG	1 cut(s)	612
BstDSI	CCRYGG	2 cut(s)	735, 754
BstFNI	CGCG	2 cut(s)	174, 696
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	4 cut(s)	247, 511, 799, 803
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	244, 508, 796, 800
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 233, 503, 559, 586
BstNSI	RCATGY	2 cut(s)	257, 530
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	136
BstUI	CGCG	2 cut(s)	174, 696
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	726, 792
BsuTUI	ATCGAT	1 cut(s)	799
BtgI	CCRYGG	2 cut(s)	735, 754
BtgZI	GCGATG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	163, 495, 779
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	724, 751
ClaI	ATCGAT	1 cut(s)	799
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	4 cut(s)	489, 642, 666, 689
CviAII	CATG	8 cut(s)	125, 254, 458, 482, 527, 536, 755, 794
CviQI	GTAC	4 cut(s)	489, 642, 666, 689
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	4 cut(s)	246, 510, 798, 802
DpnII	GATC	4 cut(s)	244, 508, 796, 800
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	8 cut(s)	128, 257, 461, 485, 530, 539, 758, 797
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	8 cut(s)	124, 253, 457, 481, 526, 535, 754, 793
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	2 cut(s)	14, 741
FriOI	GRGCYC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	162, 639
GlaI	GCGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	726, 792
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	8 cut(s)	128, 257, 461, 485, 530, 539, 758, 797
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	6 cut(s)	314, 340, 428, 532, 635, 713
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	64, 419
Hpy166II	GTNNAC	2 cut(s)	15, 742
Hpy188I	TCNGA	5 cut(s)	69, 181, 241, 369, 403
Hpy188III	TCNNGA	3 cut(s)	512, 536, 719
Hpy8I	GTNNAC	2 cut(s)	15, 742
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	3 cut(s)	43, 398, 479
HpyCH4V	TGCA	4 cut(s)	74, 206, 236, 322
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 233, 503, 559, 586
HpyF3I	CTNAG	1 cut(s)	612
Hsp92II	CATG	8 cut(s)	128, 257, 461, 485, 530, 539, 758, 797
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	244, 508, 796, 800
LmnI	GCTCC	5 cut(s)	224, 559, 586, 616, 655
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	162, 639
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	4 cut(s)	246, 510, 798, 802
MboI	GATC	4 cut(s)	244, 508, 796, 800
MboII	GAAGA	8 cut(s)	179, 254, 293, 308, 320, 323, 444, 473
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	441, 555
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	6 cut(s)	63, 363, 377, 397, 466, 730
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	469, 577, 625, 670, 715
Mox20I	TGGCCA	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	792
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	19
MvnI	CGCG	2 cut(s)	174, 696
MwoI	GCNNNNNNNGC	5 cut(s)	171, 233, 503, 559, 586
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	754
NdeII	GATC	4 cut(s)	244, 508, 796, 800
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	8 cut(s)	128, 257, 461, 485, 530, 539, 758, 797
NlaIV	GGNNCC	2 cut(s)	618, 657
NmuCI	GTSAC	1 cut(s)	120
NspI	RCATGY	2 cut(s)	257, 530
PagI	TCATGA	1 cut(s)	535
PciI	ACATGT	2 cut(s)	253, 526
PfeI	GAWTC	5 cut(s)	314, 340, 428, 532, 635
PflMI	CCANNNNNTGG	1 cut(s)	788
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PscI	ACATGT	2 cut(s)	253, 526
PspN4I	GGNNCC	2 cut(s)	618, 657
PspPI	GGNCC	2 cut(s)	724, 751
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	4 cut(s)	490, 643, 667, 690
RsaNI	GTAC	4 cut(s)	489, 642, 666, 689
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	244, 508, 796, 800
Sau96I	GGNCC	2 cut(s)	724, 751
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	441, 555
SetI	ASST	6 cut(s)	54, 229, 348, 409, 490, 613
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	6 cut(s)	63, 363, 377, 397, 466, 730
SsiI	CCGC	2 cut(s)	36, 174
SspMI	CTAG	2 cut(s)	162, 639
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	754
TaqI	TCGA	2 cut(s)	441, 799
TasI	AATT	6 cut(s)	63, 363, 377, 397, 466, 730
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	5 cut(s)	314, 340, 428, 532, 635
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	8 cut(s)	17, 128, 321, 348, 474, 498, 555, 714
TspGWI	ACGGA	2 cut(s)	724, 759
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	363, 730
XceI	RCATGY	2 cut(s)	257, 530
XmiI	GTMKAC	2 cut(s)	14, 741
XspI	CTAG	2 cut(s)	162, 639
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.