Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Forward (+)

19804746 .. 19807255

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAATTCCCAGTCTACTTGCCGCAACCAGAGACCCAAAGGGTTGAAGGTAAAGCTGGTCTTTCAGATTGCTTTGCTTTTGGCTGTTTGCTTCTGGTTGCTATACCAGATGAAGTACTCACATGACAAGGCCTATAGTGGAAGTGCAGAGAACAAGGTTAGTGAAGAACGCGGTTCTAATATTTTGGGGCGCAAAGGGAATGCAGGGTGGTCAAAAGATGGCGGTATATCTGGATCAGAAGATGTAAATCTTGTGGAAGGAAGCATAAAGAAAGAAGATGGAGGTGTTGGAGATGATATGTTAGGTGAAAATGCTGAAGAGAATAATGAAGCAGAATCTAACAAAGTAGATGATCATGCTCATGGAAAGCTTGGGAGGCCTGAAGGGAATGAAATTGAAAGGGAAACAGAAATGCAGTACAAAGTATTGAACATTACAGATGATAATTCTGATGTTGAAGACAAAGGAAATGATGAACCAGTGGGGCTCAACAGGAACTCATTGCAAGAAGAAAATTCTCAAGGGAGACATGGAGATACACAGGAAATTATCTCGGATCACGACGGTGAGAAAGATGTGAAGAATATTAGTCATGATGAAGTTGGAGAGGAAAACGAGCAAAATTCACAAGTTAATCATGATAAGCAAGAAAATGAAAAGGACCGAGAGAAAGAGCCACAGAGATTGGAGGAGTTTAGTACTAACAAGGACATTTCAGTACAACATAGTCAAGGGAAGAGTGACACTCTAAAGGGCCCAGATTCAGTGGTAGATGGAGTCCATGGATTTAATGATGAGAATGGTGTTCCTGTAGATGGCAATGATCTCATAGAGTCCATAGTGACTGGATCAAGCGATGATCATGCAATGGTTCTACATCAGGAAATGAATTCAAGTTCAAACAATCAAAGTGAAACGAAAGAAAACACTATAAAAGAAGAAGTTGCAGCTAAAGAAGGAACAAATGGCGCTGATTTTGAAGCCAAAAGCAAAATCTTAGTAGAAGACTCAAAAATCGATGTGAAACCAAAGGTGGAAACAAGTTCTGGAATTGGTGTTGACACAAACACCTCGAGGATCGATAGCGTTTCAGAAACTACACAGAGAGGCAGTTCAGTTTCAGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.17

Weight (kDa)

4.59

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	22, 171, 222
AclWI	GGATC	4 cut(s)	241, 564, 856, 1085
AcsI	RAATTY	4 cut(s)	4, 514, 622, 889
AcuI	CTGAAG	2 cut(s)	336, 402
AfaI	GTAC	4 cut(s)	116, 419, 700, 720
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	7 cut(s)	46, 398, 430, 458, 894, 900, 980
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	55, 370, 950
AluI	AGCT	3 cut(s)	55, 370, 950
Alw26I	GTCTC	2 cut(s)	25, 520
AlwI	GGATC	4 cut(s)	241, 564, 856, 1085
Ama87I	CYCGRG	1 cut(s)	1072
AoxI	GGCC	3 cut(s)	129, 377, 754
ApaI	GGGCCC	1 cut(s)	758
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	4 cut(s)	4, 514, 622, 889
AspLEI	GCGC	2 cut(s)	192, 971
AspS9I	GGNCC	3 cut(s)	661, 754, 755
AsuHPI	GGTGA	2 cut(s)	317, 578
AvaI	CYCGRG	1 cut(s)	1072
AvaII	GGWCC	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	489, 758
BbsI	GAAGAC	2 cut(s)	465, 1011
BbvI	GCAGC	1 cut(s)	959
BccI	CCATC	4 cut(s)	212, 272, 767, 809
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BclI	TGATCA	2 cut(s)	352, 859
BcoDI	GTCTC	2 cut(s)	25, 520
BfmI	CTRYAG	2 cut(s)	133, 810
BfoI	RGCGCY	1 cut(s)	972
BisI	GCNGC	2 cut(s)	22, 948
BlsI	GCNGC	2 cut(s)	23, 949
BmcAI	AGTACT	2 cut(s)	116, 700
Bme18I	GGWCC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	1072
BmgT120I	GGNCC	3 cut(s)	661, 754, 755
BmiI	GGNNCC	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	2 cut(s)	465, 1011
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpuEI	CTTGAG	1 cut(s)	504
Bsa29I	ATCGAT	2 cut(s)	1017, 1080
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	3 cut(s)	10, 479, 850
Bse3DI	GCAATG	3 cut(s)	500, 826, 873
Bse8I	GATNNNNATC	1 cut(s)	246
BseCI	ATCGAT	2 cut(s)	1017, 1080
BseDI	CCNNGG	1 cut(s)	781
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	3 cut(s)	500, 826, 873
BseNI	ACTGG	3 cut(s)	10, 479, 850
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	959
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	131, 379, 756
BshVI	ATCGAT	2 cut(s)	1017, 1080
BsiHKCI	CYCGRG	1 cut(s)	1072
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	2 cut(s)	25, 520
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	131, 379, 756
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	1072
Bsp120I	GGGCCC	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	489, 758
Bsp143I	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
Bsp19I	CCATGG	1 cut(s)	781
BspACI	CCGC	3 cut(s)	22, 171, 222
BspANI	GGCC	3 cut(s)	131, 379, 756
BspDI	ATCGAT	2 cut(s)	1017, 1080
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	2 cut(s)	592, 637
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	4 cut(s)	241, 564, 856, 1085
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	3 cut(s)	500, 826, 873
BsrI	ACTGG	3 cut(s)	10, 479, 850
BssECI	CCNNGG	1 cut(s)	781
BssMI	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
BssT1I	CCWWGG	1 cut(s)	781
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	312, 731
BstDEI	CTNAG	1 cut(s)	997
BstDSI	CCRYGG	1 cut(s)	781
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	2 cut(s)	192, 971
BstKTI	GATC	7 cut(s)	236, 355, 559, 826, 851, 862, 1080
BstMAI	GTCTC	2 cut(s)	25, 520
BstMBI	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSFI	CTRYAG	2 cut(s)	133, 810
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	959
BstV2I	GAAGAC	2 cut(s)	465, 1011
Bsu15I	ATCGAT	2 cut(s)	1017, 1080
BsuRI	GGCC	3 cut(s)	131, 379, 756
BsuTUI	ATCGAT	2 cut(s)	1017, 1080
BtgI	CCRYGG	1 cut(s)	781
BtgZI	GCGATG	1 cut(s)	870
BtsIMutI	CAGTG	2 cut(s)	486, 771
CciI	TCATGA	2 cut(s)	592, 637
CfoI	GCGC	2 cut(s)	192, 971
Cfr13I	GGNCC	3 cut(s)	661, 754, 755
ClaI	ATCGAT	2 cut(s)	1017, 1080
Csp6I	GTAC	4 cut(s)	115, 418, 699, 719
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	8 cut(s)	122, 356, 362, 530, 593, 638, 782, 863
CviQI	GTAC	4 cut(s)	115, 418, 699, 719
DdeI	CTNAG	1 cut(s)	997
DpnI	GATC	7 cut(s)	235, 354, 558, 825, 850, 861, 1079
DpnII	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
Eam1104I	CTCTTC	2 cut(s)	312, 731
EarI	CTCTTC	2 cut(s)	312, 731
Eco130I	CCWWGG	1 cut(s)	781
Eco147I	AGGCCT	2 cut(s)	131, 379
Eco24I	GRGCYC	2 cut(s)	489, 758
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	2 cut(s)	336, 402
Eco88I	CYCGRG	1 cut(s)	1072
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRI	GAATTC	2 cut(s)	4, 889
EcoT14I	CCWWGG	1 cut(s)	781
EcoT38I	GRGCYC	2 cut(s)	489, 758
ErhI	CCWWGG	1 cut(s)	781
FaeI	CATG	8 cut(s)	125, 359, 365, 533, 596, 641, 785, 866
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	8 cut(s)	121, 355, 361, 529, 592, 637, 781, 862
FbaI	TGATCA	2 cut(s)	352, 859
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	22, 948
FriOI	GRGCYC	2 cut(s)	489, 758
Fsp4HI	GCNGC	2 cut(s)	22, 948
GlaI	GCGC	2 cut(s)	191, 970
GluI	GCNGC	2 cut(s)	22, 948
HaeII	RGCGCY	1 cut(s)	972
HaeIII	GGCC	3 cut(s)	131, 379, 756
HhaI	GCGC	2 cut(s)	192, 971
Hin1II	CATG	8 cut(s)	125, 359, 365, 533, 596, 641, 785, 866
Hin6I	GCGC	2 cut(s)	190, 969
HinP1I	GCGC	2 cut(s)	190, 969
HincII	GTYRAC	1 cut(s)	1060
HindII	GTYRAC	1 cut(s)	1060
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	6 cut(s)	335, 761, 777, 833, 1007, 1124
HphI	GGTGA	2 cut(s)	317, 578
Hpy166II	GTNNAC	2 cut(s)	15, 1060
Hpy188I	TCNGA	6 cut(s)	66, 238, 451, 556, 1093, 1123
Hpy188III	TCNNGA	6 cut(s)	231, 560, 593, 638, 881, 1047
Hpy8I	GTNNAC	2 cut(s)	15, 1060
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	4 cut(s)	40, 251, 377, 950
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	146, 203, 415, 505, 866, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	997
Hsp92II	CATG	8 cut(s)	125, 359, 365, 533, 596, 641, 785, 866
HspAI	GCGC	2 cut(s)	190, 969
Ksp22I	TGATCA	2 cut(s)	352, 859
Kzo9I	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
Lsp1109I	GCAGC	1 cut(s)	959
MaeIII	GTNAC	2 cut(s)	740, 841
MalI	GATC	7 cut(s)	235, 354, 558, 825, 850, 861, 1079
MboI	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
MhlI	GDGCHC	2 cut(s)	489, 758
MluCI	AATT	8 cut(s)	4, 393, 445, 514, 546, 622, 889, 1050
MlyI	GAGTC	3 cut(s)	786, 842, 1001
MmeI	TCCRAC	2 cut(s)	268, 583
MnlI	CCTC	7 cut(s)	275, 369, 601, 682, 1068, 1081, 1100
MseI	TTAA	3 cut(s)	633, 789, 1129
MslI	CAYNNNNRTG	2 cut(s)	360, 564
Mva1269I	GAATGC	1 cut(s)	205
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
NlaIII	CATG	8 cut(s)	125, 359, 365, 533, 596, 641, 785, 866
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	2 cut(s)	740, 841
OliI	CACNNNNGTG	1 cut(s)	564
PaeR7I	CTCGAG	1 cut(s)	1072
PagI	TCATGA	2 cut(s)	592, 637
PceI	AGGCCT	2 cut(s)	131, 379
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	335, 761, 1124
PkrI	GCNGC	2 cut(s)	23, 949
PleI	GAGTC	3 cut(s)	785, 841, 1001
PpsI	GAGTC	3 cut(s)	785, 841, 1001
PspN4I	GGNNCC	1 cut(s)	756
PspOMI	GGGCCC	1 cut(s)	754
PspPI	GGNCC	3 cut(s)	661, 754, 755
PspXI	VCTCGAGB	1 cut(s)	1072
RsaI	GTAC	4 cut(s)	116, 419, 700, 720
RsaNI	GTAC	4 cut(s)	115, 418, 699, 719
RseI	CAYNNNNRTG	2 cut(s)	360, 564
SaqAI	TTAA	3 cut(s)	633, 789, 1129
SatI	GCNGC	2 cut(s)	22, 948
Sau3AI	GATC	7 cut(s)	233, 352, 556, 823, 848, 859, 1077
Sau96I	GGNCC	3 cut(s)	661, 754, 755
ScaI	AGTACT	2 cut(s)	116, 700
SchI	GAGTC	3 cut(s)	786, 842, 1001
SduI	GDGCHC	2 cut(s)	489, 758
SetI	ASST	9 cut(s)	51, 57, 159, 286, 307, 372, 952, 1035, 1073
SfcI	CTRYAG	2 cut(s)	133, 810
Sfr274I	CTCGAG	1 cut(s)	1072
SinI	GGWCC	1 cut(s)	661
SlaI	CTCGAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	2 cut(s)	360, 564
SmlI	CTYRAG	2 cut(s)	519, 1072
SmoI	CTYRAG	2 cut(s)	519, 1072
Sse9I	AATT	8 cut(s)	4, 393, 445, 514, 546, 622, 889, 1050
SseBI	AGGCCT	2 cut(s)	131, 379
SsiI	CCGC	3 cut(s)	22, 171, 222
SspI	AATATT	2 cut(s)	181, 586
StuI	AGGCCT	2 cut(s)	131, 379
StyI	CCWWGG	1 cut(s)	781
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	3 cut(s)	1017, 1073, 1080
TaqII	GACCGA	1 cut(s)	678
TasI	AATT	8 cut(s)	4, 393, 445, 514, 546, 622, 889, 1050
TatI	WGTACW	4 cut(s)	114, 417, 698, 718
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	335, 761, 1124
Tru1I	TTAA	3 cut(s)	633, 789, 1129
Tru9I	TTAA	3 cut(s)	633, 789, 1129
TscAI	CASTG	2 cut(s)	486, 771
TseFI	GTSAC	2 cut(s)	740, 841
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	2 cut(s)	740, 841
TspDTI	ATGAA	8 cut(s)	17, 125, 342, 405, 489, 612, 669, 902
TspRI	CASTG	2 cut(s)	486, 771
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	4 cut(s)	4, 514, 622, 889
XhoI	CTCGAG	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	14
ZrmI	AGTACT	2 cut(s)	116, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.