Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Forward (+)

87392879 .. 87394937

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAATTCTCAGTCTAATGGCCGCAGCCAGAGACCCAAAGGGAAGAGGGTAAAGCTGGCCATTCAGGTTGTGTCGGTTTTGGCTGTTTGCTTGTGGTTGTTATACCAAGCAAAGCAGTCTCGTGATAAGGACTACAGTGGAAGTGTACGGAACGAGGTTATTGAAAAACATGGTTCTGGTATTTTGGGGCGTAAAGCGGATGCAGGTTCAATTATTGTGGGAGAAAGCCTAAACGATGAAGATCGGGGTGGTAGAGTTGATGTATTGGATGTAAATGCTGAAGAGAAACACAAAGTAAATGATGATGGAGATCTTGGGAGACCTGAAGGGAAAGAAAGTGAAAAGAAAGTGGAATTGATATACAAAGAACTGAACAATACTGATGATAATTCTGATATTGAACTCAAAGCTAATAGTGAGGCAGTGGGACTGGACGAGAATTCATTGCAAGAAGGAAACTCCCAAGTAGGGTATGAAGATAAACAGGTGACAATGTCTGATCAGGACGGTGAGAAAGATGTGAAGAATACTAGTCACCATGAAGTTGGAGAGGATGAGGAGCAAATATCACATGTTAATCGTGATGAGCAAGGACATGAAAGGGATACACAGAAAGAGTTAGAGACAAAGGACCTCAGCTCTGACAACGAGTTTCTAGTTCAACCTACCGAAAGGAAGAATGATTCTCTTCAGGATCACAATTCAATGGTAAATGGTGTCCGTGGCTTTGATGATGAGAATGGTGTTCCTGTGGATGGTAACGATATCATAGAATCAAGAGCGACTGAATCAAGTGGTGATGGTGAAATTAGTTCACATGAAGAAATGTATTCAACTTCAAACAGTCAAAGTGAAAACAGTGAAAGCACTCAAAGTGAAGAAGTTGTTGTTAGAGGAGATAATGCTGATTTTGAAGCCAGAAGCAAAATCTCGGTACAAGATTCAGGTTCTAAGGCAGAAACAAACTCTGAAGCTAGTGTTCAGGTAGATACCTCAAGGATCAATAATGTGACTGGAACTATACAGGGAGGCACTTCAGTTTCAGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.36

Weight (kDa)

4.5

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	2 cut(s)	22, 197
AclWI	GGATC	2 cut(s)	702, 1007
AcoI	YGGCCR	2 cut(s)	19, 57
AcsI	RAATTY	2 cut(s)	4, 439
AcuI	CTGAAG	5 cut(s)	300, 345, 674, 990, 1020
AfaI	GTAC	2 cut(s)	147, 936
AfiI	CCNNNNNNNGG	2 cut(s)	468, 755
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	8 cut(s)	164, 210, 401, 662, 705, 834, 840, 914
AhlI	ACTAGT	1 cut(s)	530
AluBI	AGCT	4 cut(s)	55, 410, 639, 974
AluI	AGCT	4 cut(s)	55, 410, 639, 974
Alw26I	GTCTC	4 cut(s)	25, 123, 313, 617
AlwI	GGATC	2 cut(s)	702, 1007
AoxI	GGCC	2 cut(s)	19, 57
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	4, 439
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	5 cut(s)	499, 521, 527, 809, 815
AvaII	GGWCC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	59
BauI	CACGAG	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	299, 749, 794
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	4 cut(s)	25, 123, 313, 617
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	3 cut(s)	531, 656, 975
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmsI	GCATC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	979
BsaBI	GATNNNNATC	2 cut(s)	240, 309
BsaI	GGTCTC	2 cut(s)	25, 313
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 755
Bse1I	ACTGG	2 cut(s)	435, 1018
Bse3DI	GCAATG	1 cut(s)	443
Bse8I	GATNNNNATC	2 cut(s)	240, 309
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	4 cut(s)	205, 274, 559, 760
BseJI	GATNNNNATC	2 cut(s)	240, 309
BseLI	CCNNNNNNNGG	2 cut(s)	468, 755
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	23, 649
BseNI	ACTGG	2 cut(s)	435, 1018
BseRI	GAGGAG	2 cut(s)	572, 909
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	21, 59
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	468, 755
BsmAI	GTCTC	4 cut(s)	25, 123, 313, 617
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	21, 59
Bso31I	GGTCTC	2 cut(s)	25, 313
Bsp143I	GATC	5 cut(s)	241, 310, 499, 694, 999
BspACI	CCGC	2 cut(s)	22, 197
BspANI	GGCC	2 cut(s)	21, 59
BspCNI	CTCAG	2 cut(s)	22, 648
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	702, 1007
BspTNI	GGTCTC	2 cut(s)	25, 313
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	435, 1018
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	5 cut(s)	241, 310, 499, 694, 999
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	137, 509, 845, 860
Bst6I	CTCTTC	3 cut(s)	38, 276, 693
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	9, 635, 951
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	4 cut(s)	205, 274, 559, 760
BstKTI	GATC	5 cut(s)	244, 313, 502, 697, 1002
BstMAI	GTCTC	4 cut(s)	25, 123, 313, 617
BstMBI	GATC	5 cut(s)	241, 310, 499, 694, 999
BstNSI	RCATGY	1 cut(s)	575
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	21, 59
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	4 cut(s)	205, 274, 559, 760
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	142, 429, 865
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	146, 935
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	5 cut(s)	170, 539, 572, 596, 818
CviQI	GTAC	2 cut(s)	146, 935
DdeI	CTNAG	3 cut(s)	9, 635, 951
DpnI	GATC	5 cut(s)	243, 312, 501, 696, 1001
DpnII	GATC	5 cut(s)	241, 310, 499, 694, 999
EaeI	YGGCCR	2 cut(s)	19, 57
Eam1104I	CTCTTC	3 cut(s)	38, 276, 693
EarI	CTCTTC	3 cut(s)	38, 276, 693
Eco31I	GGTCTC	2 cut(s)	25, 313
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	5 cut(s)	300, 345, 674, 990, 1020
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRI	GAATTC	2 cut(s)	4, 439
EcoRV	GATATC	1 cut(s)	766
FaeI	CATG	5 cut(s)	173, 542, 575, 599, 821
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	169, 538, 571, 595, 817
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	4 cut(s)	212, 281, 566, 767
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	3 cut(s)	531, 656, 975
GluI	GCNGC	2 cut(s)	22, 25
HaeIII	GGCC	2 cut(s)	21, 59
Hin1II	CATG	5 cut(s)	173, 542, 575, 599, 821
HinfI	GANTC	4 cut(s)	683, 773, 788, 941
HphI	GGTGA	5 cut(s)	499, 521, 527, 809, 815
Hpy166II	GTNNAC	2 cut(s)	146, 815
Hpy188I	TCNGA	5 cut(s)	394, 499, 643, 970, 1045
Hpy188III	TCNNGA	5 cut(s)	122, 503, 581, 692, 777
Hpy8I	GTNNAC	2 cut(s)	146, 815
HpyAV	CCTTC	2 cut(s)	320, 446
HpyCH4III	ACNGT	4 cut(s)	137, 509, 845, 860
HpyCH4V	TGCA	2 cut(s)	203, 448
HpyF3I	CTNAG	3 cut(s)	9, 635, 951
Hsp92II	CATG	5 cut(s)	173, 542, 575, 599, 821
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	241, 310, 499, 694, 999
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	531, 656, 975
MaeIII	GTNAC	4 cut(s)	487, 533, 758, 1009
MalI	GATC	5 cut(s)	243, 312, 501, 696, 1001
MboI	GATC	5 cut(s)	241, 310, 499, 694, 999
MboII	GAAGA	9 cut(s)	55, 251, 293, 488, 535, 680, 688, 833, 890
MflI	RGATCY	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	7 cut(s)	4, 210, 353, 388, 439, 700, 807
MluNI	TGGCCA	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	9 cut(s)	39, 148, 412, 544, 550, 644, 887, 1003, 1022
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	59
NdeII	GATC	5 cut(s)	241, 310, 499, 694, 999
NlaIII	CATG	5 cut(s)	173, 542, 575, 599, 821
NmuCI	GTSAC	3 cut(s)	487, 533, 1009
NspI	RCATGY	1 cut(s)	575
PciI	ACATGT	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	683, 773, 788, 941
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	23, 26
PpuMI	RGGWCCY	1 cut(s)	631
PscI	ACATGT	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	631
PspPPI	RGGWCCY	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	493
RsaI	GTAC	2 cut(s)	147, 936
RsaNI	GTAC	2 cut(s)	146, 935
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	5 cut(s)	241, 310, 499, 694, 999
Sau96I	GGNCC	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	7 cut(s)	4, 210, 353, 388, 439, 700, 807
SsiI	CCGC	2 cut(s)	22, 197
SspMI	CTAG	3 cut(s)	531, 656, 975
TaaI	ACNGT	4 cut(s)	137, 509, 845, 860
TasI	AATT	7 cut(s)	4, 210, 353, 388, 439, 700, 807
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	4 cut(s)	683, 773, 788, 941
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	3 cut(s)	142, 429, 865
TseFI	GTSAC	3 cut(s)	487, 533, 1009
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	3 cut(s)	487, 533, 1009
TspDTI	ATGAA	7 cut(s)	17, 252, 432, 489, 555, 612, 834
TspGWI	ACGGA	2 cut(s)	163, 710
TspRI	CASTG	3 cut(s)	142, 429, 865
Tth111I	GACNNNGTC	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	2 cut(s)	4, 439
XceI	RCATGY	1 cut(s)	575
XspI	CTAG	3 cut(s)	531, 656, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.