Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4829202 .. 4831928

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAATTCTCAGTCTAATGGCCGCAGCCAGAGACCCAAAGGGAAGAGGGTAAAGCTGGCCATTCAGATTGTGTCGGTTTTGGCTGTTTGCTTGTGGTTGTTATACCAAGCAAAGCAGTCTCGTGATAAGGACTACAGTGGAAGTGTACAGAACGAGGTTATTGAAAAACATGGTTCTGGTATTTTGGGGCGTAAAGCGAATGCAGGTGGTTCAATTCTTGTGGGAGAAAGCCTAAACGATGAAGATCGGGGTGGTGGAGTTGATGTATTGGATGGAAATGTTGAAGAGAAGCACAAAGTAAATGATGATGGAGATCTTGGGAGACCTGAAGGGAAAGAAAGTGAAAAGAAAGCGGAATTGATATACAAAGAACTGAACAATACTGATGATAATTCTGATATTGAACTCAAAGCTAATAGTGAGGCAGTGGGACTGGACGAGAACTCATTGCAAGAAGGAAACTCCCAAGTAGGGTATGAAGATAAACAGGTGACAATGTCTGATCAGGACGGTGAGAAAGATGCGAAGAATACTAGTCACCATGAAGTTGGAGAGGATGAGGAGCAAATATCACATGTTAATCGTGATGAGCAAGGACATGAAAGGGACACACAGAAAGAGTCAGAGACAAAGGACCTCAGTTCTGACAACGAGTTTCTAGTTCAACCTACCGAAAGGAAGAATGATTCTCTTCAGGATCACAATTCAATGGTAAATGGTGTCCGTGGCTTTGATGATGAGAATGGTGTTCCTGTGGACGGTAACGATATCATAGAATCAAGTGGTGATGGTGAAATTAGTTCACATGAAGAAATGTATTCAACTTCAAACAGTGAAAGCACTCAAAGTGAAGAAGTTGTTGTTAGAGGAGATAATGCTGATTTTGAAGCCAGAAGCAAAATCTTGGTACAAGATTCAGGTTCTAAGGCAGAAACAAACTCTGAAGCTAGTGTTCAGGTAGATACCTCAAGGATCAATAATGTGACTGGAACTATACAGGGAGGCACTTCAGTTTCAGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.13

Weight (kDa)

4.46

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	2 cut(s)	22, 353
AclWI	GGATC	2 cut(s)	705, 980
AcoI	YGGCCR	2 cut(s)	19, 57
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	4 cut(s)	348, 677, 963, 993
AfaI	GTAC	2 cut(s)	147, 909
AfiI	CCNNNNNNNGG	2 cut(s)	471, 758
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	9 cut(s)	164, 213, 284, 404, 665, 708, 822, 828, 887
AhlI	ACTAGT	1 cut(s)	533
AluBI	AGCT	3 cut(s)	55, 413, 947
AluI	AGCT	3 cut(s)	55, 413, 947
Alw26I	GTCTC	4 cut(s)	25, 123, 316, 620
AlwI	GGATC	2 cut(s)	705, 980
AoxI	GGCC	2 cut(s)	19, 57
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	5 cut(s)	502, 524, 530, 797, 803
AvaII	GGWCC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	59
BauI	CACGAG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	266, 302, 782
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	4 cut(s)	25, 123, 316, 620
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	3 cut(s)	534, 659, 948
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	2 cut(s)	313, 1018
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	634
BmsI	GCATC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	952
BsaBI	GATNNNNATC	2 cut(s)	243, 312
BsaI	GGTCTC	2 cut(s)	25, 316
BsaJI	CCNNGG	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 758
Bse1I	ACTGG	2 cut(s)	438, 991
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	2 cut(s)	243, 312
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	2 cut(s)	277, 562
BseJI	GATNNNNATC	2 cut(s)	243, 312
BseLI	CCNNNNNNNGG	2 cut(s)	471, 758
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	23, 652
BseNI	ACTGG	2 cut(s)	438, 991
BseRI	GAGGAG	2 cut(s)	575, 882
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	21, 59
BslFI	GGGAC	2 cut(s)	444, 620
BslI	CCNNNNNNNGG	2 cut(s)	471, 758
BsmAI	GTCTC	4 cut(s)	25, 123, 316, 620
BsmFI	GGGAC	2 cut(s)	444, 620
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	21, 59
Bso31I	GGTCTC	2 cut(s)	25, 316
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
BspACI	CCGC	2 cut(s)	22, 353
BspANI	GGCC	2 cut(s)	21, 59
BspCNI	CTCAG	2 cut(s)	22, 651
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	705, 980
BspTNI	GGTCTC	2 cut(s)	25, 316
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	438, 991
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	137, 512, 761, 833
Bst6I	CTCTTC	3 cut(s)	38, 279, 696
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	9, 638, 924
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	277, 562
BstKTI	GATC	6 cut(s)	247, 316, 505, 700, 975, 1021
BstMAI	GTCTC	4 cut(s)	25, 123, 316, 620
BstMBI	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
BstNSI	RCATGY	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	313, 1018
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	2 cut(s)	313, 1018
BsuRI	GGCC	2 cut(s)	21, 59
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	277, 562
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	142, 432, 838
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	146, 908
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	5 cut(s)	170, 542, 575, 599, 806
CviQI	GTAC	2 cut(s)	146, 908
DdeI	CTNAG	3 cut(s)	9, 638, 924
DpnI	GATC	6 cut(s)	246, 315, 504, 699, 974, 1020
DpnII	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
EaeI	YGGCCR	2 cut(s)	19, 57
Eam1104I	CTCTTC	3 cut(s)	38, 279, 696
EarI	CTCTTC	3 cut(s)	38, 279, 696
Eco31I	GGTCTC	2 cut(s)	25, 316
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	4 cut(s)	348, 677, 963, 993
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	769
FaeI	CATG	5 cut(s)	173, 545, 578, 602, 809
FaqI	GGGAC	2 cut(s)	444, 620
FatI	CATG	5 cut(s)	169, 541, 574, 598, 805
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	2 cut(s)	284, 569
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	3 cut(s)	534, 659, 948
GluI	GCNGC	2 cut(s)	22, 25
HaeIII	GGCC	2 cut(s)	21, 59
Hin1II	CATG	5 cut(s)	173, 545, 578, 602, 809
HinfI	GANTC	4 cut(s)	620, 686, 776, 914
HphI	GGTGA	5 cut(s)	502, 524, 530, 797, 803
Hpy166II	GTNNAC	3 cut(s)	146, 757, 803
Hpy188I	TCNGA	7 cut(s)	66, 397, 502, 625, 646, 943, 1018
Hpy188III	TCNNGA	4 cut(s)	122, 506, 584, 695
Hpy8I	GTNNAC	3 cut(s)	146, 757, 803
HpyAV	CCTTC	2 cut(s)	323, 449
HpyCH4III	ACNGT	4 cut(s)	137, 512, 761, 833
HpyCH4V	TGCA	2 cut(s)	203, 451
HpyF3I	CTNAG	3 cut(s)	9, 638, 924
Hsp92II	CATG	5 cut(s)	173, 545, 578, 602, 809
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	3 cut(s)	534, 659, 948
MaeIII	GTNAC	4 cut(s)	490, 536, 761, 982
MalI	GATC	6 cut(s)	246, 315, 504, 699, 974, 1020
MboI	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
MboII	GAAGA	9 cut(s)	55, 254, 296, 491, 538, 683, 691, 821, 863
MflI	RGATCY	2 cut(s)	313, 1018
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	6 cut(s)	4, 213, 356, 391, 703, 795
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	9 cut(s)	39, 148, 415, 547, 553, 647, 860, 976, 995
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	205
NdeII	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
NlaIII	CATG	5 cut(s)	173, 545, 578, 602, 809
NmuCI	GTSAC	3 cut(s)	490, 536, 982
NspI	RCATGY	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	194
PciI	ACATGT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	686, 776, 914
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	23, 26
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PsuI	RGATCY	2 cut(s)	313, 1018
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	2 cut(s)	147, 909
RsaNI	GTAC	2 cut(s)	146, 908
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	6 cut(s)	244, 313, 502, 697, 972, 1018
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	6 cut(s)	4, 213, 356, 391, 703, 795
SsiI	CCGC	2 cut(s)	22, 353
SspMI	CTAG	3 cut(s)	534, 659, 948
TaaI	ACNGT	4 cut(s)	137, 512, 761, 833
TasI	AATT	6 cut(s)	4, 213, 356, 391, 703, 795
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	686, 776, 914
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	142, 432, 838
TseFI	GTSAC	3 cut(s)	490, 536, 982
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	3 cut(s)	490, 536, 982
TspDTI	ATGAA	6 cut(s)	17, 255, 492, 558, 615, 822
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	3 cut(s)	142, 432, 838
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	578
XspI	CTAG	3 cut(s)	534, 659, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.