Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

12287585 .. 12288553

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAGCACTCTCACTATAGTGAAAGTGCAGATGACAAGGCCAGTAAAGAACACGGTTCTAATATTTTCGGGCGTAAGGGGAGTGCAGGGTGGTCAAAAGGTGGAGGTGTGTCTGCATCAGAAGATTCAAAACATGTAGGAGAAGTAAGTACAAAGACAGAAGATGGAAACGATGTGTTTGATGGAATTGCTGAAGAGAAAAATGAAGAAGAATCTTGGCAGAAAGTAAACCAAGTGAATGAAGTTGAAAAGGAAACAGAAGTTCAGAACACAGAATTGAGCAATACAGACGAGAATTCTGATGGTGAAGTTAAAGGAAACGGCGAAACAATGGGGCTGAACGAGAATTCATTGCGTGAAGAAACTTACCGAGAGGGACAGGAAGGTACACAGGCAGTTATCTCGGAACAAGATGGTGAGAAACATGTGAAGAACATTAGTCATGATGAAGCAAGAGAGGACGAGGAGCAGGAATCACAAGTTAATCGTGATGAGCAAGAAAATGGAAGGGGCCAGGAGAAAGAGCCAAAGAGATTGCAGGAATCTAATACTACTAACACAGACATTTCAGTACGACGGGATGAAAATAAGAATGACTCTCTTGAGGGCCAAAATTCAGTGGTAGATGCAGTGGTCCATGGTTTTGATGATGAGAATGGTGTGCCGGTAGATGGCCATGATATCATAGAATCCTTAGTGATTGTATCGAGTGGTGATCATGCAATCACGGGTCATCAGGAAATTAATTTGAGTTCGAATAATCAAAATGAAATCAATGAAAATGCAGTAAATGAAGAAGTTGGGTCTAAAGATGGAACAAATGGTGCAGATTTGGAAGCCAAAAGCAAAATCTCAGCGCAAGATTCAAACATTGACATTAAATCAAAGGTCGAAACAAGTTCAGACACCTCAAAGATCGATAGCGTTAAAGAGACTACAAGGGGAGGCAGTTCCGTTCCAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.05

Weight (kDa)

4.43

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	3 cut(s)	295, 346, 613
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	151, 388, 573
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflIII	ACRYGT	2 cut(s)	133, 424
AgsI	TTSAA	3 cut(s)	129, 248, 867
AjnI	CCWGG	1 cut(s)	513
AleI	CACNNNNGTG	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	926
AoxI	GGCC	4 cut(s)	39, 511, 607, 673
ApoI	RAATTY	3 cut(s)	295, 346, 613
AseI	ATTAAT	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	3 cut(s)	511, 607, 634
AsuHPI	GGTGA	3 cut(s)	317, 428, 725
AsuII	TTCGAA	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	675
BccI	CCATC	6 cut(s)	158, 176, 296, 407, 665, 806
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	926
BfmI	CTRYAG	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	3 cut(s)	511, 607, 634
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	125, 616
Bpu14I	TTCGAA	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	867
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	479
BsgI	GTGCAG	3 cut(s)	48, 105, 846
BshFI	GGCC	4 cut(s)	41, 513, 609, 675
BshVI	ATCGAT	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	665
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	1 cut(s)	926
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	4 cut(s)	41, 513, 609, 675
Bsp119I	TTCGAA	1 cut(s)	755
Bsp143I	GATC	2 cut(s)	715, 915
Bsp19I	CCATGG	1 cut(s)	637
BspANI	GGCC	4 cut(s)	41, 513, 609, 675
BspCNI	CTCAG	1 cut(s)	866
BspDI	ATCGAT	1 cut(s)	918
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	512
BspT104I	TTCGAA	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	2 cut(s)	715, 915
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	694, 853
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	2 cut(s)	718, 918
BstMAI	GTCTC	1 cut(s)	926
BstMBI	GATC	2 cut(s)	715, 915
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	137, 428
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	918
BsuRI	GGCC	4 cut(s)	41, 513, 609, 675
BsuTUI	ATCGAT	1 cut(s)	918
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	624, 636
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	511, 607, 634
ClaI	ATCGAT	1 cut(s)	918
Csp6I	GTAC	3 cut(s)	150, 387, 572
CviAII	CATG	6 cut(s)	134, 425, 443, 638, 677, 719
CviJI	RGCY	7 cut(s)	41, 337, 513, 526, 609, 675, 839
CviKI_1	RGCY	7 cut(s)	41, 337, 513, 526, 609, 675, 839
CviQI	GTAC	3 cut(s)	150, 387, 572
DdeI	CTNAG	2 cut(s)	694, 853
DpnI	GATC	2 cut(s)	717, 917
DpnII	GATC	2 cut(s)	715, 915
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	637
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	213
EcoRI	GAATTC	2 cut(s)	295, 346
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	6 cut(s)	137, 428, 446, 641, 680, 722
FaiI	YATR	9 cut(s)	18, 135, 426, 444, 639, 678, 686, 720, 967
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	6 cut(s)	133, 424, 442, 637, 676, 718
FbaI	TGATCA	1 cut(s)	715
FokI	GGATG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	41, 513, 609, 675
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	1 cut(s)	859
Hin1II	CATG	6 cut(s)	137, 428, 446, 641, 680, 722
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HinfI	GANTC	8 cut(s)	125, 212, 473, 542, 596, 689, 863, 962
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	3 cut(s)	317, 428, 725
Hpy166II	GTNNAC	2 cut(s)	229, 389
Hpy188I	TCNGA	5 cut(s)	121, 267, 301, 406, 904
Hpy188III	TCNNGA	5 cut(s)	443, 488, 602, 737, 959
Hpy8I	GTNNAC	2 cut(s)	229, 389
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	377, 501
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	8 cut(s)	29, 86, 116, 538, 629, 722, 785, 827
HpyF3I	CTNAG	2 cut(s)	694, 853
Hsp92II	CATG	6 cut(s)	137, 428, 446, 641, 680, 722
HspAI	GCGC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	715, 915
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	2 cut(s)	125, 616
MalI	GATC	2 cut(s)	717, 917
MboI	GATC	2 cut(s)	715, 915
MboII	GAAGA	8 cut(s)	134, 173, 206, 218, 221, 371, 442, 806
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	7 cut(s)	186, 275, 295, 346, 613, 741, 745
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	7 cut(s)	98, 367, 451, 457, 598, 919, 938
Mox20I	TGGCCA	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	5 cut(s)	312, 483, 744, 879, 927
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	2 cut(s)	715, 915
NlaIII	CATG	6 cut(s)	137, 428, 446, 641, 680, 722
NlaIV	GGNNCC	1 cut(s)	512
NspI	RCATGY	2 cut(s)	137, 428
NspV	TTCGAA	1 cut(s)	755
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	1 cut(s)	442
PciI	ACATGT	2 cut(s)	133, 424
PfeI	GAWTC	7 cut(s)	125, 212, 473, 542, 689, 863, 962
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PscI	ACATGT	2 cut(s)	133, 424
PshBI	ATTAAT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	3 cut(s)	511, 607, 634
RsaI	GTAC	3 cut(s)	151, 388, 573
RsaNI	GTAC	3 cut(s)	150, 387, 572
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	312, 483, 744, 879, 927
Sau3AI	GATC	2 cut(s)	715, 915
Sau96I	GGNCC	3 cut(s)	511, 607, 634
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	5 cut(s)	103, 109, 388, 891, 911
SfaNI	GCATC	2 cut(s)	125, 616
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	755
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	7 cut(s)	186, 275, 295, 346, 613, 741, 745
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	4 cut(s)	707, 755, 891, 918
TasI	AATT	7 cut(s)	186, 275, 295, 346, 613, 741, 745
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	7 cut(s)	125, 212, 473, 542, 689, 863, 962
Tru1I	TTAA	5 cut(s)	312, 483, 744, 879, 927
Tru9I	TTAA	5 cut(s)	312, 483, 744, 879, 927
TscAI	CASTG	2 cut(s)	624, 636
TspGWI	ACGGA	1 cut(s)	943
TspRI	CASTG	2 cut(s)	624, 636
VpaK11BI	GGWCC	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	3 cut(s)	295, 346, 613
XceI	RCATGY	2 cut(s)	137, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.