Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4981225 .. 4982556

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAATTCTCAGTCTAATGGCCGCAGCCAGAGACCCAAAGGGAAGAGGGTAAAGCTGGCCATTCAGATTGTGTCGGTTTTGGCTGTTTGCTTGTGGTTGTTATACCAAGCAAAGCAGTCTCGTGATAAGGACTACAGTGGAAGTGTACAGAACGAGGTTATTGAAAAACATGGTTCTGGTATTTTGGGGCGTAAAGCAGATGCAGGTGGTTCAATTCTTGTGGGAGAAAGCCTAAACGATGGAGATCGGGGTGGTGGAGTTGATGTATTGGATGGAAATGTTGAAGAGAAGCACAAAGTAAATGATGATGGAGATCTTGGGAGACCTGAAGGGAAAGAAAGTGAAAAGAAAGTGGAATTCATATACAAAGAACTGAACAATACTGATGATAATTCTGATATTGAACTCAAAGCTAATAGTGAGGCAGTGGGACTGGACGAGAATTCATTGCAAGAAGGAAACTCCCAAGTAGGGTATGAAGATAAACAGGTGACAATGTCTGATCAGGACGGTGAGAAAGATATGAAGAATACTAGTCACCATGAAGTTGGAGAGGATGAGGAGCAAATATCACATGTTAATCGTGATGAGCAAGGACATGAAAGGGACACACAGAAAGAGTCAGAGACAAAGGACCTCAGTTCTGACAACAAGTTTCTAGTTCAACCTACGGAAAGGAAGAATGATTCTCTTCAGGATCACAATTCAATGGTAAATGGTGTCCGTGGCTTTGATGATGAGAATGGTGTTCCTGTGGACGGTAACGATATCATAGAATCAAGAGTGACTGAATCAAGTGGTGATGGTGAAATTAGTTCACATGAAGAAATGTATACAACTTCAAACAGTCAAAGTGAAAACAGTGAAAGCACTCAAAGTGAAGAAGTTGTTGTTAGAGGAGATAATGCTGATTTTGAAGCCAGAAGCAAAATCTCGGTACAAGGTTCAGGTTCTAAGGCAGAAACTAACTCTGAAGCTAGCGTTCAGGTTGTTGACATACGTTGTATTTGCTTAGATAATGAAAAAGGGATAGTCCTAATAGTACCAGTTCTGAGTGCTATTACATACACAAATGAGAGTTTGGTTTTCAGTAGGAAGAGGAAATGGTTCAGATCTGTTATCATGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.58

Weight (kDa)

4.65

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	833
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	705
AcoI	YGGCCR	2 cut(s)	19, 57
AcsI	RAATTY	3 cut(s)	4, 356, 442
AcuI	CTGAAG	3 cut(s)	348, 677, 993
AfaI	GTAC	3 cut(s)	147, 939, 1044
AfiI	CCNNNNNNNGG	2 cut(s)	471, 758
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	9 cut(s)	164, 213, 284, 404, 665, 708, 843, 917, 1129
AhlI	ACTAGT	1 cut(s)	533
AluBI	AGCT	3 cut(s)	55, 413, 977
AluI	AGCT	3 cut(s)	55, 413, 977
Alw26I	GTCTC	4 cut(s)	25, 123, 316, 620
AlwI	GGATC	1 cut(s)	705
AoxI	GGCC	2 cut(s)	19, 57
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	3 cut(s)	4, 356, 442
Asp700I	GAANNNNTTC	1 cut(s)	1106
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	5 cut(s)	502, 524, 530, 812, 818
AsuNHI	GCTAGC	1 cut(s)	977
AvaII	GGWCC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	59
BauI	CACGAG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	4 cut(s)	233, 266, 302, 797
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	4 cut(s)	25, 123, 316, 620
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	3 cut(s)	534, 659, 978
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	2 cut(s)	313, 1112
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	634
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	981
BsaBI	GATNNNNATC	2 cut(s)	243, 312
BsaI	GGTCTC	2 cut(s)	25, 316
BsaJI	CCNNGG	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 758
Bse1I	ACTGG	2 cut(s)	438, 1046
Bse3DI	GCAATG	1 cut(s)	446
Bse8I	GATNNNNATC	2 cut(s)	243, 312
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	2 cut(s)	277, 562
BseJI	GATNNNNATC	2 cut(s)	243, 312
BseLI	CCNNNNNNNGG	2 cut(s)	471, 758
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	3 cut(s)	23, 652, 1043
BseNI	ACTGG	2 cut(s)	438, 1046
BseRI	GAGGAG	2 cut(s)	575, 912
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	21, 59
BslFI	GGGAC	2 cut(s)	444, 620
BslI	CCNNNNNNNGG	2 cut(s)	471, 758
BsmAI	GTCTC	4 cut(s)	25, 123, 316, 620
BsmFI	GGGAC	2 cut(s)	444, 620
BsnI	GGCC	2 cut(s)	21, 59
Bso31I	GGTCTC	2 cut(s)	25, 316
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	244, 313, 502, 697, 1112
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	21, 59
BspCNI	CTCAG	3 cut(s)	22, 651, 1044
BspMI	ACCTGC	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	981
BspPI	GGATC	1 cut(s)	705
BspTNI	GGTCTC	2 cut(s)	25, 316
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	438, 1046
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	5 cut(s)	244, 313, 502, 697, 1112
BssNAI	GTATAC	1 cut(s)	834
BssSI	CACGAG	1 cut(s)	120
Bst1107I	GTATAC	1 cut(s)	834
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	5 cut(s)	137, 512, 761, 848, 863
Bst6I	CTCTTC	4 cut(s)	38, 279, 696, 1091
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	57, 979
BstDEI	CTNAG	5 cut(s)	9, 638, 954, 1012, 1052
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	277, 562
BstKTI	GATC	5 cut(s)	247, 316, 505, 700, 1115
BstMAI	GTCTC	4 cut(s)	25, 123, 316, 620
BstMBI	GATC	5 cut(s)	244, 313, 502, 697, 1112
BstNSI	RCATGY	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	313, 1112
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	2 cut(s)	313, 1112
BstZ17I	GTATAC	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	21, 59
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	277, 562
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	142, 432, 868
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	57, 979
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	146, 938, 1043
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	6 cut(s)	170, 542, 575, 599, 821, 1123
CviQI	GTAC	3 cut(s)	146, 938, 1043
DdeI	CTNAG	5 cut(s)	9, 638, 954, 1012, 1052
DpnI	GATC	5 cut(s)	246, 315, 504, 699, 1114
DpnII	GATC	5 cut(s)	244, 313, 502, 697, 1112
EaeI	YGGCCR	2 cut(s)	19, 57
Eam1104I	CTCTTC	4 cut(s)	38, 279, 696, 1091
EarI	CTCTTC	4 cut(s)	38, 279, 696, 1091
Eco31I	GGTCTC	2 cut(s)	25, 316
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	3 cut(s)	348, 677, 993
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	3 cut(s)	4, 356, 442
EcoRV	GATATC	1 cut(s)	769
FaeI	CATG	6 cut(s)	173, 545, 578, 602, 824, 1126
FaqI	GGGAC	2 cut(s)	444, 620
FatI	CATG	6 cut(s)	169, 541, 574, 598, 820, 1122
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	2 cut(s)	284, 569
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	3 cut(s)	534, 659, 978
GluI	GCNGC	2 cut(s)	22, 25
HaeIII	GGCC	2 cut(s)	21, 59
Hin1II	CATG	6 cut(s)	173, 545, 578, 602, 824, 1126
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HinfI	GANTC	4 cut(s)	620, 686, 776, 791
HphI	GGTGA	5 cut(s)	502, 524, 530, 812, 818
Hpy166II	GTNNAC	5 cut(s)	146, 757, 818, 834, 994
Hpy188I	TCNGA	8 cut(s)	66, 397, 502, 625, 646, 973, 1053, 1112
Hpy188III	TCNNGA	5 cut(s)	122, 506, 584, 695, 780
Hpy8I	GTNNAC	5 cut(s)	146, 757, 818, 834, 994
HpyAV	CCTTC	2 cut(s)	323, 449
HpyCH4III	ACNGT	5 cut(s)	137, 512, 761, 848, 863
HpyCH4IV	ACGT	1 cut(s)	1000
HpyCH4V	TGCA	2 cut(s)	203, 451
HpyF3I	CTNAG	5 cut(s)	9, 638, 954, 1012, 1052
HpySE526I	ACGT	1 cut(s)	1000
Hsp92II	CATG	6 cut(s)	173, 545, 578, 602, 824, 1126
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	244, 313, 502, 697, 1112
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	534, 659, 978
MaeII	ACGT	1 cut(s)	1000
MaeIII	GTNAC	4 cut(s)	490, 536, 761, 784
MalI	GATC	5 cut(s)	246, 315, 504, 699, 1114
MboI	GATC	5 cut(s)	244, 313, 502, 697, 1112
MboII	GAAGA	9 cut(s)	55, 296, 491, 538, 683, 691, 836, 893, 1108
MflI	RGATCY	2 cut(s)	313, 1112
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	8 cut(s)	4, 213, 356, 391, 442, 703, 810, 1129
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	39, 148, 415, 547, 553, 647, 890, 1092
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	1106
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	579, 1132
Msp20I	TGGCCA	1 cut(s)	59
NdeII	GATC	5 cut(s)	244, 313, 502, 697, 1112
NheI	GCTAGC	1 cut(s)	977
NlaIII	CATG	6 cut(s)	173, 545, 578, 602, 824, 1126
NmuCI	GTSAC	3 cut(s)	490, 536, 784
NspI	RCATGY	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	194
PciI	ACATGT	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	1106
PfeI	GAWTC	3 cut(s)	686, 776, 791
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	23, 26
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PsuI	RGATCY	2 cut(s)	313, 1112
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	3 cut(s)	147, 939, 1044
RsaNI	GTAC	3 cut(s)	146, 938, 1043
SaqAI	TTAA	2 cut(s)	579, 1132
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	5 cut(s)	244, 313, 502, 697, 1112
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	634
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	8 cut(s)	4, 213, 356, 391, 442, 703, 810, 1129
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	3 cut(s)	534, 659, 978
TaaI	ACNGT	5 cut(s)	137, 512, 761, 848, 863
TaiI	ACGT	1 cut(s)	1003
TasI	AATT	8 cut(s)	4, 213, 356, 391, 442, 703, 810, 1129
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	686, 776, 791
Tru1I	TTAA	2 cut(s)	579, 1132
Tru9I	TTAA	2 cut(s)	579, 1132
TscAI	CASTG	3 cut(s)	142, 432, 868
TseFI	GTSAC	3 cut(s)	490, 536, 784
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	3 cut(s)	490, 536, 784
TspDTI	ATGAA	9 cut(s)	17, 349, 435, 492, 539, 558, 615, 837, 1035
TspGWI	ACGGA	2 cut(s)	686, 713
TspRI	CASTG	3 cut(s)	142, 432, 868
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	3 cut(s)	4, 356, 442
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	833
XmnI	GAANNNNTTC	1 cut(s)	1106
XspI	CTAG	3 cut(s)	534, 659, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.