Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006380

Physical Location & Seq

Genomic Coordinates Reverse (-)

15377604 .. 15379854

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1194600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGCACTCACATGGCAAGGACTATAGTGAAGGTGCAGATGGCAAGGCCAGTAAAGAACATGGTTCTAATATTTTCGGGCGTAAGGGGAGTGCAGGGTGGTCAAAAGGTGGAGGTGTGTCTGCATCAGAAGATTCAAAACATGTAGGAGAAGTAAGTATAAAGACAGAAGATGAAAATGATGTGTTCGATGGAAGTGCTGAAGAGAAAAATGAAGAAGAATCTTTGCAGAAAGTAAACGAAGCAAATGAAGTTGAAAAGGAAACAGAAGTTCAGAACACAGAATTGAGCAATACAGATGAGAATTCTGATGGTGAAGTTAAAGGAAACGGCGAAACAGTGGGGCTGAACGAGAATTCATCGCGTGAAGAAACTTACCGAGAGGGACAGGAAGGTACACAGGCAGTTATCTCAGAACAAAATGGTGAGAAACATGTGAAGAACATTAGTCTCGATGAAGCAGGAGAGGACGAGGAGCAGGAATCACAAGTTAATCGTGATGAGCAAGAAAATGGAAAGGGCCAGGAGAAAGAGCCAAAGAGATTGCAGGAATCTAGTACTACTAACACAGACATTTCAGTACGATGGGATGAAAGTAAGAATGACTCTCTTGAGGGCCAAAATTCAGTGGTAGATGCAGTGGTCCATGGTTTTGATGATGAGAATGGTGTGCCGGTAGATGGCCATGATATCATAGAATCCTTAGTGACTGTATCCAGTGGTGATCATGCAATCACGGGTCATCAGGAAATGAATTTGAGTTCGAATAATCAAAATGAAATCAGTGAAAATGCAGTAAGTGAAGAAGTTGCGTCTAAAGATGGAACAAATGGTGCAGATTTGGAAGCCAAAAGCAAAATCTCAGCACAAGATTCAAACATTGACATTAAATCGAAGGTCGAAACAAGTTCAGACACCTCAAAGATCGATAGCGTTAAAGAGACTACAAAGGGAGGCAGTTCCGTTTCAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

34.91

Weight (kDa)

4.38

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006380)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05950 FvH4_1g05950
malus_domestica	MD02G1064100.v1.1 MD15G1194600.v1.1
prunus_persica	Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1 Prupe.7G221600_v2.0.a1
pyrus_communis	pycom02g05020 pycom15g17430
rosa_chinensis	RchiOBHm_Chr2g0091571
rosa_laevigata	RLG00000016239
rosa_multiflora	Rmu_sc0000897.1_g000015
rosa_roxburghii	Rroxscaffold_2G00149860
rosa_rugosa	Rorug02G0018800.1 Rorug02G0018900.1 Rorug02G0019000 Rorug02G0019100
rosa_samantha	Rh2AG064200 Rh2BG063500 Rh2CG065200 Rh2DG063600
rosa_wichuraiana	Rw2G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	4 cut(s)	304, 355, 622, 754
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	397, 559, 582
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflIII	ACRYGT	2 cut(s)	142, 433
AgsI	TTSAA	3 cut(s)	138, 257, 876
AjnI	CCWGG	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	455, 935
AoxI	GGCC	4 cut(s)	48, 520, 616, 682
ApoI	RAATTY	4 cut(s)	304, 355, 622, 754
AspS9I	GGNCC	3 cut(s)	520, 616, 643
AsuHPI	GGTGA	3 cut(s)	326, 437, 734
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	684
BccI	CCATC	6 cut(s)	35, 185, 305, 579, 674, 815
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	724
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	2 cut(s)	455, 935
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	724
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	643
BmgT120I	GGNCC	3 cut(s)	520, 616, 643
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	134, 625
Bpu14I	TTCGAA	1 cut(s)	764
BpuEI	CTTGAG	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	927
BsaJI	CCNNGG	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	2 cut(s)	51, 717
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	426, 876
BseNI	ACTGG	2 cut(s)	51, 717
BseRI	GAGGAG	1 cut(s)	488
BsgI	GTGCAG	3 cut(s)	57, 114, 855
Bsh1236I	CGCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	50, 522, 618, 684
BshVI	ATCGAT	1 cut(s)	927
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	2 cut(s)	455, 935
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	50, 522, 618, 684
Bsp119I	TTCGAA	1 cut(s)	764
Bsp143I	GATC	2 cut(s)	724, 924
Bsp19I	CCATGG	1 cut(s)	646
BspANI	GGCC	4 cut(s)	50, 522, 618, 684
BspCNI	CTCAG	2 cut(s)	425, 875
BspDI	ATCGAT	1 cut(s)	927
BspFNI	CGCG	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	2 cut(s)	51, 717
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	2 cut(s)	724, 924
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	340, 712
Bst6I	CTCTTC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	764
BstDEI	CTNAG	3 cut(s)	412, 703, 862
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	2 cut(s)	727, 927
BstMAI	GTCTC	2 cut(s)	455, 935
BstMBI	GATC	2 cut(s)	724, 924
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	2 cut(s)	146, 437
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	4 cut(s)	50, 522, 618, 684
BsuTUI	ATCGAT	1 cut(s)	927
BtgI	CCRYGG	1 cut(s)	646
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	5 cut(s)	345, 633, 645, 724, 790
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	3 cut(s)	520, 616, 643
ClaI	ATCGAT	1 cut(s)	927
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	396, 558, 581
CviAII	CATG	7 cut(s)	14, 62, 143, 434, 647, 686, 728
CviJI	RGCY	7 cut(s)	50, 346, 522, 535, 618, 684, 848
CviKI_1	RGCY	7 cut(s)	50, 346, 522, 535, 618, 684, 848
CviQI	GTAC	3 cut(s)	396, 558, 581
DdeI	CTNAG	3 cut(s)	412, 703, 862
DpnI	GATC	2 cut(s)	726, 926
DpnII	GATC	2 cut(s)	724, 924
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	304, 355
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	7 cut(s)	17, 65, 146, 437, 650, 689, 731
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	7 cut(s)	13, 61, 142, 433, 646, 685, 727
FbaI	TGATCA	1 cut(s)	724
FokI	GGATG	1 cut(s)	602
FspBI	CTAG	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	50, 522, 618, 684
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	801
Hin1II	CATG	7 cut(s)	17, 65, 146, 437, 650, 689, 731
HinfI	GANTC	8 cut(s)	134, 221, 482, 551, 605, 698, 872, 971
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	3 cut(s)	326, 437, 734
Hpy166II	GTNNAC	2 cut(s)	238, 398
Hpy188I	TCNGA	6 cut(s)	130, 276, 310, 415, 913, 970
Hpy188III	TCNNGA	4 cut(s)	452, 497, 611, 746
Hpy8I	GTNNAC	2 cut(s)	238, 398
HpyAV	CCTTC	3 cut(s)	26, 386, 889
HpyCH4III	ACNGT	2 cut(s)	340, 712
HpyCH4V	TGCA	9 cut(s)	38, 95, 125, 229, 547, 638, 731, 794, 836
HpyF3I	CTNAG	3 cut(s)	412, 703, 862
Hsp92II	CATG	7 cut(s)	17, 65, 146, 437, 650, 689, 731
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	2 cut(s)	724, 924
LmnI	GCTCC	1 cut(s)	475
LweI	GCATC	2 cut(s)	134, 625
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	2 cut(s)	726, 926
MboI	GATC	2 cut(s)	724, 924
MboII	GAAGA	8 cut(s)	143, 182, 215, 227, 230, 380, 451, 815
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	5 cut(s)	284, 304, 355, 622, 754
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	1 cut(s)	599
MnlI	CCTC	7 cut(s)	107, 376, 460, 466, 607, 928, 947
Mox20I	TGGCCA	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	4 cut(s)	321, 492, 888, 936
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	684
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	364
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	2 cut(s)	724, 924
NlaIII	CATG	7 cut(s)	17, 65, 146, 437, 650, 689, 731
NmuCI	GTSAC	1 cut(s)	706
NspI	RCATGY	2 cut(s)	146, 437
NspV	TTCGAA	1 cut(s)	764
PciI	ACATGT	2 cut(s)	142, 433
PfeI	GAWTC	7 cut(s)	134, 221, 482, 551, 698, 872, 971
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	2 cut(s)	142, 433
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspPI	GGNCC	3 cut(s)	520, 616, 643
RsaI	GTAC	3 cut(s)	397, 559, 582
RsaNI	GTAC	3 cut(s)	396, 558, 581
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	321, 492, 888, 936
Sau3AI	GATC	2 cut(s)	724, 924
Sau96I	GGNCC	3 cut(s)	520, 616, 643
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	6 cut(s)	37, 112, 118, 397, 900, 920
SfaNI	GCATC	2 cut(s)	134, 625
SfcI	CTRYAG	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	284, 304, 355, 622, 754
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	340, 712
TaqI	TCGA	6 cut(s)	189, 453, 764, 893, 900, 927
TasI	AATT	5 cut(s)	284, 304, 355, 622, 754
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	7 cut(s)	134, 221, 482, 551, 698, 872, 971
Tru1I	TTAA	4 cut(s)	321, 492, 888, 936
Tru9I	TTAA	4 cut(s)	321, 492, 888, 936
TscAI	CASTG	5 cut(s)	345, 633, 645, 724, 790
TseFI	GTSAC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	706
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	5 cut(s)	345, 633, 645, 724, 790
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	4 cut(s)	304, 355, 622, 754
XceI	RCATGY	2 cut(s)	146, 437
XspI	CTAG	1 cut(s)	555
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.