Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009907

Physical Location & Seq

Genomic Coordinates Forward (+)

5578725 .. 5581759

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTGGTGTTCGACAAGGACGCAACCTCGTCCTCCCAGACCCTCCCTCCTTTTCCACGCGAGGACACCCCTCTCCTCGGCAAACACCGCCACCTCTCGTCGCCGGCCAAGACCTTCGCCAACGTCTTCATCGCCATCGTCGGCTCCGGCGTCCTGGGCCTCCCTTACACTTTCAAGAAAACCGGATGGGTCTTCGGCTCTGTTATGCTCTTCTCCGTCGCCTTCCTCACCTACTACTGCATGATGCTTCTCGTCAAAACCCGCCGGAGACTTGAATCCGACTTGGCTCTCTCCAAGATCACCTCTTTCGGCGACCTGGCCTTCGCCGTGTGCGGCGGAGTTGGTCGGTTTGCGGTGGATGTGAGCATAGTGCTTGCTCAAGCTGGGTTCTGTGTTAGTTACTTGATATTCATATCCAACAGTTTGGCTTATGTGTTCAACTATTCTGGGCCTGTTCGGGTTCTGGGTTTGAGTCCGAAAAGCTTGTATCTTTGGGGGTGTTTTCCTTTTCAGCTGGGTTTGAATTCGATTCCCACACTGACCCATTTGGCTCCTTTGAGTATTTTTGCTGATGTGGTTGATCTTGGAGCTATGGGAGTTGTCATGGTTGAGGATGTGATGATCTTTCTGCAGAATCGACCGGCTTTGCAAGCGTTTGGGGGTTTTGGGGTTTTCTTTTATGGTCTTGGTGTGGCTGTTTATGCATTTGAAGGGATTGGGATGATACTTCCTTTGGAGTCTGAGGCTAGAGATAAGGAGAAGTTTGGGAAAGTGTTGGGTTTGGTTATGGGATTCATTGCTTTGTTGTATGGGAGCTTTGGGGTTCTTGGTTACTTTGCTTTTGGGGAAGAGACTAAAGACATTATCACTACCAACTTTGGGCAAGGCTTGGTGAGCACTCTAGTACAGTTGGGTCTGTGCATAAACTTGTTCTTTACTTTACCATTGATGATGAACCCGGTTTATGAGGTTGTGGAGAGGAGATTTTGGGATGGGAGGTACTGCCTGTGGCTGAGGTGGGTTATGGTGTTTGGGATCAGCTTGGTAGCTCTTACTGTGCCTAATTTTGCAGACTTTTTGTCACTGGTGGGGAGCAGTGTGTGTGTGGCTTTAGGGTTTGTGTTTCCTGCTTTGTTCCATTTGATGGTGTTCAAGGAGGAGTTGGGGTGGCATGGGATGGCTTTGGATGGGACTATTGTGGTGGCTGGGGTGATTATTGGAGTCTCTGGAACTTGGTCTTCAGTAGCAGAGATTGTTGCACCCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

424

Amino Acids

46.03

Weight (kDa)

6.52

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	33 - 414	3.5e-73	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65990
fragaria_vesca	FvH4_1g10240
malus_domestica	MD02G1114400.v1.1 MD15G1230000.v1.1
prunus_persica	Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1
pyrus_communis	pycom02g08930 pycom15g20520
rosa_chinensis	RchiOBHm_Chr2g0097061
rosa_laevigata	RLG00000016699
rosa_multiflora	Rmu_co8492857.1_g000002 Rmu_sc0006853.1_g000002 Rmu_sc0017953.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145010
rosa_rugosa	Rorug02G0063300
rosa_samantha	Rh2AG110900 Rh2BG112800 Rh2CG115000 Rh2DG114200
rosa_wichuraiana	Rw2G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1144
AccII	CGCG	1 cut(s)	60
AciI	CCGC	5 cut(s)	88, 262, 333, 336, 353
AclWI	GGATC	1 cut(s)	1043
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	1224
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	906, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	77, 879, 1144
AgsI	TTSAA	6 cut(s)	175, 275, 439, 523, 710, 1153
AhdI	GACNNNNNGTC	1 cut(s)	1078
AjnI	CCWGG	2 cut(s)	153, 315
AluBI	AGCT	8 cut(s)	383, 483, 514, 590, 816, 1041, 1049, 1268
AluI	AGCT	8 cut(s)	383, 483, 514, 590, 816, 1041, 1049, 1268
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	3 cut(s)	262, 845, 1228
AlwI	GGATC	1 cut(s)	1043
AoxI	GGCC	4 cut(s)	105, 157, 318, 449
ApoI	RAATTY	1 cut(s)	523
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	2 cut(s)	157, 449
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	4 cut(s)	220, 292, 904, 1222
BbsI	GAAGAC	3 cut(s)	118, 184, 1230
Bbv12I	GWGCWC	1 cut(s)	899
BbvCI	CCTCAGC	1 cut(s)	1013
BccI	CCATC	6 cut(s)	143, 180, 986, 1138, 1171, 1181
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	155, 317
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	3 cut(s)	262, 845, 1228
BfaI	CTAG	2 cut(s)	747, 902
BfmI	CTRYAG	1 cut(s)	629
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	3 cut(s)	155, 317, 959
BmeRI	GACNNNNNGTC	1 cut(s)	1078
BmgT120I	GGNCC	2 cut(s)	157, 449
BmiI	GGNNCC	2 cut(s)	145, 552
BmrFI	CCNGG	3 cut(s)	155, 317, 959
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	3 cut(s)	118, 184, 1230
Bpu10I	CCTNAGC	1 cut(s)	1013
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	959
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	76, 154
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 1151, 1181
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 879, 1144
Bse118I	RCCGGY	2 cut(s)	103, 640
Bse1I	ACTGG	1 cut(s)	1089
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	155, 317
BseDI	CCNNGG	2 cut(s)	76, 154
BseGI	GGATG	7 cut(s)	191, 364, 619, 726, 997, 1182, 1192
BseLI	CCNNNNNNNGG	3 cut(s)	77, 879, 1144
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	732, 1004
BseNI	ACTGG	1 cut(s)	1089
BseRI	GAGGAG	3 cut(s)	65, 994, 1172
BseYI	CCCAGC	3 cut(s)	383, 514, 1205
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	641
BshFI	GGCC	4 cut(s)	107, 159, 320, 451
BsiEI	CGRYCG	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	6 cut(s)	104, 147, 183, 265, 641, 959
BslFI	GGGAC	1 cut(s)	1204
BslI	CCNNNNNNNGG	3 cut(s)	77, 879, 1144
BsmAI	GTCTC	3 cut(s)	262, 845, 1228
BsmFI	GGGAC	1 cut(s)	1204
BsnI	GGCC	4 cut(s)	107, 159, 320, 451
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	4 cut(s)	297, 580, 621, 1035
BspACI	CCGC	5 cut(s)	88, 262, 333, 336, 353
BspANI	GGCC	4 cut(s)	107, 159, 320, 451
BspCNI	CTCAG	2 cut(s)	733, 1005
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	145, 552
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	1 cut(s)	1043
BspQI	GCTCTTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	2 cut(s)	103, 640
BsrI	ACTGG	1 cut(s)	1089
BssAI	RCCGGY	2 cut(s)	103, 640
BssECI	CCNNGG	2 cut(s)	76, 154
BssMI	GATC	4 cut(s)	297, 580, 621, 1035
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	155, 317
Bst4CI	ACNGT	3 cut(s)	422, 909, 1057
Bst6I	CTCTTC	2 cut(s)	215, 843
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	105, 375, 651
BstDEI	CTNAG	2 cut(s)	741, 1013
BstF5I	GGATG	7 cut(s)	191, 364, 619, 726, 997, 1182, 1192
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	4 cut(s)	300, 583, 624, 1038
BstMAI	GTCTC	3 cut(s)	262, 845, 1228
BstMBI	GATC	4 cut(s)	297, 580, 621, 1035
BstMCI	CGRYCG	1 cut(s)	641
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 156, 650, 701, 894, 1265
BstNI	CCWGG	2 cut(s)	155, 317
BstSCI	CCNGG	3 cut(s)	153, 315, 957
BstSFI	CTRYAG	1 cut(s)	629
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	3 cut(s)	118, 184, 1230
BstXI	CCANNNNNNTGG	1 cut(s)	424
BsuRI	GGCC	4 cut(s)	107, 159, 320, 451
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	7 cut(s)	191, 364, 619, 726, 997, 1182, 1192
BtsI	GCAGTG	1 cut(s)	1102
BtsIMutI	CAGTG	3 cut(s)	536, 1082, 1102
Cac8I	GCNNGC	3 cut(s)	105, 375, 651
Cfr10I	RCCGGY	2 cut(s)	103, 640
Cfr13I	GGNCC	2 cut(s)	157, 449
CseI	GACGC	2 cut(s)	29, 139
Csp6I	GTAC	2 cut(s)	905, 1000
CviAII	CATG	3 cut(s)	241, 604, 1172
CviQI	GTAC	2 cut(s)	905, 1000
DdeI	CTNAG	2 cut(s)	741, 1013
DpnI	GATC	4 cut(s)	299, 582, 623, 1037
DpnII	GATC	4 cut(s)	297, 580, 621, 1035
DriI	GACNNNNNGTC	1 cut(s)	1078
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	215, 843
Eam1105I	GACNNNNNGTC	1 cut(s)	1078
EarI	CTCTTC	2 cut(s)	215, 843
EciI	GGCGGA	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	1224
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	153, 315
EcoT22I	ATGCAT	1 cut(s)	706
FaeI	CATG	3 cut(s)	244, 607, 1175
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	3 cut(s)	240, 603, 1171
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	7 cut(s)	198, 371, 626, 733, 1004, 1189, 1199
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	2 cut(s)	747, 902
GluI	GCNGC	1 cut(s)	334
GsaI	CCCAGC	3 cut(s)	387, 518, 1209
HaeIII	GGCC	4 cut(s)	107, 159, 320, 451
HapII	CCGG	6 cut(s)	104, 147, 183, 265, 641, 959
HgaI	GACGC	2 cut(s)	29, 139
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	244, 607, 1175
HindIII	AAGCTT	2 cut(s)	481, 1266
HinfI	GANTC	7 cut(s)	275, 472, 529, 634, 737, 792, 1221
HpaII	CCGG	6 cut(s)	104, 147, 183, 265, 641, 959
HphI	GGTGA	4 cut(s)	220, 292, 904, 1222
Hpy188I	TCNGA	3 cut(s)	280, 477, 742
Hpy188III	TCNNGA	2 cut(s)	175, 1227
Hpy99I	CGWCG	3 cut(s)	103, 143, 221
HpyAV	CCTTC	4 cut(s)	124, 232, 331, 704
HpyCH4III	ACNGT	3 cut(s)	422, 909, 1057
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	240, 631, 649, 704, 921, 1070, 1259
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 156, 650, 701, 894, 1265
HpyF3I	CTNAG	2 cut(s)	741, 1013
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	244, 607, 1175
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	297, 580, 621, 1035
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	5 cut(s)	149, 556, 587, 813, 1092
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	747, 902
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	398, 830, 1080
MalI	GATC	4 cut(s)	299, 582, 623, 1037
MboI	GATC	4 cut(s)	297, 580, 621, 1035
MboII	GAAGA	5 cut(s)	118, 184, 202, 860, 1230
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	2 cut(s)	523, 1063
MlyI	GAGTC	3 cut(s)	481, 746, 1230
MmeI	TCCRAC	2 cut(s)	303, 441
Mph1103I	ATGCAT	1 cut(s)	706
MroNI	GCCGGC	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	6 cut(s)	104, 147, 183, 265, 641, 959
MspR9I	CCNGG	3 cut(s)	155, 317, 959
MvaI	CCWGG	2 cut(s)	155, 317
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	87, 156, 650, 701, 894, 1265
NaeI	GCCGGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	959
NdeII	GATC	4 cut(s)	297, 580, 621, 1035
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	244, 607, 1175
NlaIV	GGNNCC	2 cut(s)	145, 552
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	1080
NsiI	ATGCAT	1 cut(s)	706
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	275, 529, 634, 792
PflMI	CCANNNNNTGG	1 cut(s)	1144
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	480, 745, 1229
PpsI	GAGTC	3 cut(s)	480, 745, 1229
Psp6I	CCWGG	2 cut(s)	153, 315
PspFI	CCCAGC	3 cut(s)	383, 514, 1205
PspGI	CCWGG	2 cut(s)	153, 315
PspN4I	GGNNCC	2 cut(s)	145, 552
PspPI	GGNCC	2 cut(s)	157, 449
PstI	CTGCAG	1 cut(s)	633
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	2 cut(s)	906, 1001
RsaNI	GTAC	2 cut(s)	905, 1000
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	4 cut(s)	297, 580, 621, 1035
Sau96I	GGNCC	2 cut(s)	157, 449
SchI	GAGTC	3 cut(s)	481, 746, 1230
ScrFI	CCNGG	3 cut(s)	155, 317, 959
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	2 cut(s)	523, 1063
SsiI	CCGC	5 cut(s)	88, 262, 333, 336, 353
SspMI	CTAG	2 cut(s)	747, 902
StyD4I	CCNGG	3 cut(s)	153, 315, 957
TaaI	ACNGT	3 cut(s)	422, 909, 1057
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	12, 527, 637
TasI	AATT	2 cut(s)	523, 1063
TatI	WGTACW	1 cut(s)	904
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	4 cut(s)	275, 529, 634, 792
TscAI	CASTG	3 cut(s)	543, 1089, 1102
TseFI	GTSAC	1 cut(s)	1080
Tsp45I	GTSAC	1 cut(s)	1080
TspDTI	ATGAA	4 cut(s)	118, 400, 784, 968
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	3 cut(s)	543, 1089, 1102
Van91I	CCANNNNNTGG	1 cut(s)	1144
XapI	RAATTY	1 cut(s)	523
XspI	CTAG	2 cut(s)	747, 902
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.