MD02G1114400.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9308359 .. 9309645
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1114400.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGTGGTGTTTGACAAAGAAGCCGGCTCCTCCACCAACACCCTCCCGCCCTTCCCCCGGGAAGATACTCCTCTCCTCTCCAAACCCAGCAAGCTCTCCTCCCAACCCAAGACCTTCGCCAACGTCTTCATCGCCATCGTCGGCTCCGGCGTGCTGGGTCTACCCTACACCTTCAAGAAAACCGGCTGGGTCTTCGGCTCCCTCATGCTCTTCTCCGTCGCCTTCCTCACCTACCACTGTATGATGCTCCTAATCCACACCCGCCGCAAGCTCGAATCCCTCCACGGCGGCGGCCTCTCAAAGATCGCGTCTTTCGGCGACCTGGGCTTCGCCGTCTGCGGCCCAGTCGGCCGGTTCTCCGTCGACGTCATGATCGTCCTCGCCCAGGCCGGGTTCTGCGTCAGCTACCTAATCTTCATATCAAACACTTTAGCCTTTGTTTTCAATTACTCCGGCCCGGACCGGATTCTTGGTCTGACCCCCAAATCAATCTACCTCTGGGGATGTTTCCCATTCCAGCTGGGTCTGAATTCGATTCCAACCCTGACCCATCTCGCCCCTCTGAGCATTTTCGCTGACGTCGTCGACCTCGGCGCCATGGGAGTTGTAATGGTGGTAGACGTCATGATCTTCCTCCAAAACAAACCCGCTCTGCAGGCGTTCGGCGGCTTCTCCGTCTTCTTCTACGGCCTCGGCGTGGCGGTTTATGCCTTCGAGGGGATCGGAATGATCCTCCCCCTTGAATCCGAAGCCAAAAACAAAGAAAACTTCGGGAAAGTCCTGGCCTTGAGCATGGCATTCATAGCTCTGATCTACGGATCATTCGGAATTCTGGGTTACTTCGCATTCGGGGAAGAAACCAAAGACATAATCACAACCAATTTCGGGCAGGGCGTTGTGAGCACACTGGTGCAGCTGGGTCTGTGCATAAACCTGTTCTTCACTCTCCCGTTGATGATGAACCCGGTTTTCGAGGTCGTGGAGCGGCGGTTCTGCGGCTCCACCTACTCCCTGTGGCTGCGGTGGCTGACGGTTTTTGGGGTGAGCCTGGTGGCGCTGCTGGTGCCGAATTTCGCAGATTTCTTGTCGCTGGTGGGGAGCAGTGTGTGTGTGGCGCTGGGGTTTGTGCTGCCTGCTCTGTTTCATCTGATGGTGTTTAGGGATGAGCTGAGTTGGTTTGGGAGTGTTTTGGATGGGTGCATTGTGGTATTGGGTGTGGTGATTGGGGTGTCTGGGACTTGGTCCTCAGTGGCGGAGATTATTGCACCCAAAGCTCGATTTGGTTGA

Protein Analysis

429

Amino Acids

46.31

Weight (kDa)

6.94

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 34 - 416 6.3e-73 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 369, 582, 624
AccB1I GGYRCC 2 cut(s) 593, 1063
AccBSI CCGCTC 2 cut(s) 650, 985
AccI GTMKAC 4 cut(s) 160, 363, 585, 618
AccII CGCG 1 cut(s) 308
AclWI GGATC 3 cut(s) 724, 728, 826
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 3 cut(s) 529, 828, 1069
AcyI GRCGYC 4 cut(s) 366, 579, 594, 621
AfiI CCNNNNNNNGG 6 cut(s) 57, 385, 390, 697, 717, 885
AgsI TTSAA 3 cut(s) 175, 445, 743
AjnI CCWGG 4 cut(s) 321, 384, 780, 1047
AleI CACNNNNGTG 1 cut(s) 908
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 8 cut(s) 94, 271, 405, 520, 806, 916, 1168, 1274
AluI AGCT 8 cut(s) 94, 271, 405, 520, 806, 916, 1168, 1274
Alw21I GWGCWC 1 cut(s) 905
AlwI GGATC 3 cut(s) 724, 728, 826
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 7 cut(s) 292, 340, 349, 387, 454, 688, 783
ApeKI GCWGC 4 cut(s) 913, 1018, 1057, 1129
ApoI RAATTY 3 cut(s) 529, 828, 1069
ArsI GACNNNNNNTTYG 4 cut(s) 293, 311, 325, 343
AspLEI GCGC 3 cut(s) 596, 1057, 1117
AspS9I GGNCC 4 cut(s) 341, 455, 460, 1242
AsuC2I CCSGG 5 cut(s) 58, 59, 391, 458, 965
AsuHPI GGTGA 3 cut(s) 220, 1054, 1231
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 2 cut(s) 460, 1242
BanI GGYRCC 2 cut(s) 593, 1063
BbsI GAAGAC 3 cut(s) 118, 184, 670
Bbv12I GWGCWC 1 cut(s) 905
BbvI GCAGC 4 cut(s) 925, 1005, 1044, 1116
BccI CCATC 4 cut(s) 143, 558, 1144, 1187
BceAI ACGGC 3 cut(s) 301, 317, 703
BciT130I CCWGG 4 cut(s) 323, 386, 782, 1049
BcnI CCSGG 5 cut(s) 58, 59, 391, 458, 965
BfmI CTRYAG 1 cut(s) 653
BfoI RGCGCY 3 cut(s) 597, 1058, 1118
BglI GCCNNNNNGGC 1 cut(s) 348
Bme1390I CCNGG 9 cut(s) 58, 59, 323, 386, 391, 458, 782, 965, 1049
Bme18I GGWCC 2 cut(s) 460, 1242
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 4 cut(s) 341, 455, 460, 1242
BmiI GGNNCC 6 cut(s) 28, 145, 199, 595, 1000, 1065
BmrFI CCNGG 9 cut(s) 58, 59, 323, 386, 391, 458, 782, 965, 1049
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 338
BpiI GAAGAC 3 cut(s) 118, 184, 670
BpuEI CTTGAG 1 cut(s) 808
BpuMI CCSGG 5 cut(s) 58, 59, 391, 458, 965
BsaHI GRCGYC 4 cut(s) 366, 579, 594, 621
BsaJI CCNNGG 8 cut(s) 56, 57, 283, 322, 384, 589, 597, 691
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 974, 1004
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 385, 390, 697, 717, 885
Bse118I RCCGGY 3 cut(s) 23, 182, 351
Bse1I ACTGG 2 cut(s) 344, 912
BseBI CCWGG 4 cut(s) 323, 386, 782, 1049
BseDI CCNNGG 8 cut(s) 56, 57, 283, 322, 384, 589, 597, 691
BseGI GGATG 3 cut(s) 509, 1168, 1198
BseLI CCNNNNNNNGG 6 cut(s) 57, 385, 390, 697, 717, 885
BseMII CTCAG 3 cut(s) 554, 1160, 1260
BseNI ACTGG 2 cut(s) 344, 912
BseRI GAGGAG 4 cut(s) 19, 60, 65, 88
BseX3I CGGCCG 1 cut(s) 349
BseXI GCAGC 4 cut(s) 925, 1005, 1044, 1116
BseYI CCCAGC 6 cut(s) 86, 154, 186, 520, 916, 1117
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 7 cut(s) 294, 342, 351, 389, 456, 690, 785
BshNI GGYRCC 2 cut(s) 593, 1063
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 905
BsiHKCI CYCGRG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 1249
BslI CCNNNNNNNGG 6 cut(s) 57, 385, 390, 697, 717, 885
BsmFI GGGAC 1 cut(s) 1249
BsmI GAATGC 2 cut(s) 797, 845
BsnI GGCC 7 cut(s) 294, 342, 351, 389, 456, 690, 785
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 905
Bsp143I GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
Bsp19I CCATGG 1 cut(s) 597
BspANI GGCC 7 cut(s) 294, 342, 351, 389, 456, 690, 785
BspCNI CTCAG 3 cut(s) 555, 1161, 1259
BspFNI CGCG 1 cut(s) 308
BspHI TCATGA 2 cut(s) 369, 624
BspLI GGNNCC 6 cut(s) 28, 145, 199, 595, 1000, 1065
BspMAI CTGCAG 1 cut(s) 657
BspPI GGATC 3 cut(s) 724, 728, 826
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 2 cut(s) 593, 1063
BsrBI CCGCTC 2 cut(s) 650, 985
BsrFI RCCGGY 3 cut(s) 23, 182, 351
BsrI ACTGG 2 cut(s) 344, 912
BssAI RCCGGY 3 cut(s) 23, 182, 351
BssECI CCNNGG 8 cut(s) 56, 57, 283, 322, 384, 589, 597, 691
BssMI GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
BssNI GRCGYC 4 cut(s) 366, 579, 594, 621
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 4 cut(s) 323, 386, 782, 1049
Bst4CI ACNGT 2 cut(s) 239, 1033
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 4 cut(s) 366, 579, 594, 621
BstC8I GCNNGC 6 cut(s) 25, 92, 152, 269, 657, 1134
BstDEI CTNAG 3 cut(s) 563, 1169, 1246
BstDSI CCRYGG 2 cut(s) 283, 597
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 3 cut(s) 509, 1168, 1198
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 3 cut(s) 597, 1058, 1118
BstHHI GCGC 3 cut(s) 596, 1057, 1117
BstKTI GATC 7 cut(s) 306, 375, 630, 723, 732, 813, 821
BstMBI GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 9 cut(s) 324, 348, 656, 707, 803, 900, 1024, 1063, 1271
BstNI CCWGG 4 cut(s) 323, 386, 782, 1049
BstSCI CCNGG 9 cut(s) 56, 57, 321, 384, 389, 456, 780, 963, 1047
BstSFI CTRYAG 1 cut(s) 653
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 925, 1005, 1044, 1116
BstV2I GAAGAC 3 cut(s) 118, 184, 670
BstZI CGGCCG 1 cut(s) 349
BsuRI GGCC 7 cut(s) 294, 342, 351, 389, 456, 690, 785
BtgI CCRYGG 2 cut(s) 283, 597
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 509, 1168, 1198
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 4 cut(s) 235, 905, 1108, 1254
Cac8I GCNNGC 6 cut(s) 25, 92, 152, 269, 657, 1134
CciI TCATGA 2 cut(s) 369, 624
CfoI GCGC 3 cut(s) 596, 1057, 1117
Cfr10I RCCGGY 3 cut(s) 23, 182, 351
Cfr13I GGNCC 4 cut(s) 341, 455, 460, 1242
Cfr9I CCCGGG 1 cut(s) 57
CpoI CGGWCCG 1 cut(s) 460
CseI GACGC 2 cut(s) 297, 388
CspI CGGWCCG 1 cut(s) 460
CviAII CATG 5 cut(s) 205, 370, 598, 625, 793
DdeI CTNAG 3 cut(s) 563, 1169, 1246
DinI GGCGCC 1 cut(s) 595
DpnI GATC 7 cut(s) 305, 374, 629, 722, 731, 812, 820
DpnII GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
EaeI YGGCCR 1 cut(s) 349
EagI CGGCCG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 1268
EclXI CGGCCG 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 460, 1242
Eco52I CGGCCG 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoRI GAATTC 2 cut(s) 529, 828
EcoRII CCWGG 4 cut(s) 321, 384, 780, 1047
EcoT14I CCWWGG 1 cut(s) 597
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 5 cut(s) 208, 373, 601, 628, 796
FaqI GGGAC 1 cut(s) 1249
FatI CATG 5 cut(s) 204, 369, 597, 624, 792
FauI CCCGC 3 cut(s) 54, 269, 655
FblI GTMKAC 4 cut(s) 160, 363, 585, 618
FokI GGATG 3 cut(s) 516, 1175, 1205
GlaI GCGC 3 cut(s) 595, 1056, 1116
GsaI CCCAGC 6 cut(s) 90, 158, 190, 524, 920, 1121
HaeII RGCGCY 3 cut(s) 597, 1058, 1118
HaeIII GGCC 7 cut(s) 294, 342, 351, 389, 456, 690, 785
HgaI GACGC 2 cut(s) 297, 388
HhaI GCGC 3 cut(s) 596, 1057, 1117
Hin1I GRCGYC 4 cut(s) 366, 579, 594, 621
Hin1II CATG 5 cut(s) 208, 373, 601, 628, 796
Hin6I GCGC 3 cut(s) 594, 1055, 1115
HinP1I GCGC 3 cut(s) 594, 1055, 1115
HincII GTYRAC 2 cut(s) 364, 586
HindII GTYRAC 2 cut(s) 364, 586
HinfI GANTC 4 cut(s) 275, 466, 535, 743
HphI GGTGA 3 cut(s) 220, 1054, 1231
Hpy166II GTNNAC 4 cut(s) 161, 364, 586, 619
Hpy188I TCNGA 8 cut(s) 477, 528, 564, 725, 748, 810, 827, 1149
Hpy188III TCNNGA 4 cut(s) 175, 370, 625, 772
Hpy8I GTNNAC 4 cut(s) 161, 364, 586, 619
Hpy99I CGWCG 6 cut(s) 143, 221, 365, 368, 584, 587
HpyAV CCTTC 5 cut(s) 61, 124, 181, 232, 721
HpyCH4III ACNGT 2 cut(s) 239, 1033
HpyCH4IV ACGT 4 cut(s) 123, 366, 579, 621
HpyCH4V TGCA 5 cut(s) 655, 913, 927, 1200, 1265
HpyF10VI GCNNNNNNNGC 9 cut(s) 324, 348, 656, 707, 803, 900, 1024, 1063, 1271
HpyF3I CTNAG 3 cut(s) 563, 1169, 1246
HpySE526I ACGT 4 cut(s) 123, 366, 579, 621
Hsp92I GRCGYC 4 cut(s) 366, 579, 594, 621
Hsp92II CATG 5 cut(s) 208, 373, 601, 628, 796
HspAI GCGC 3 cut(s) 594, 1055, 1115
KasI GGCGCC 1 cut(s) 593
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 7 cut(s) 32, 149, 203, 252, 982, 1004, 1098
Lsp1109I GCAGC 4 cut(s) 925, 1005, 1044, 1116
LweI GCATC 1 cut(s) 234
MaeII ACGT 4 cut(s) 123, 366, 579, 621
MaeIII GTNAC 1 cut(s) 836
MalI GATC 7 cut(s) 305, 374, 629, 722, 731, 812, 820
MbiI CCGCTC 2 cut(s) 650, 985
MboI GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
MhlI GDGCHC 1 cut(s) 905
MluCI AATT 5 cut(s) 445, 529, 828, 880, 1069
Mly113I GGCGCC 1 cut(s) 594
MmeI TCCRAC 1 cut(s) 563
MroNI GCCGGC 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 908
MspA1I CMGCKG 2 cut(s) 520, 916
MspR9I CCNGG 9 cut(s) 58, 59, 323, 386, 391, 458, 782, 965, 1049
Mva1269I GAATGC 2 cut(s) 797, 845
MvaI CCWGG 4 cut(s) 323, 386, 782, 1049
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 9 cut(s) 324, 348, 656, 707, 803, 900, 1024, 1063, 1271
NaeI GCCGGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 594
NciI CCSGG 5 cut(s) 58, 59, 391, 458, 965
NcoI CCATGG 1 cut(s) 597
NdeII GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 5 cut(s) 208, 373, 601, 628, 796
NlaIV GGNNCC 6 cut(s) 28, 145, 199, 595, 1000, 1065
NmeAIII GCCGAG 2 cut(s) 570, 672
OliI CACNNNNGTG 1 cut(s) 908
PagI TCATGA 2 cut(s) 369, 624
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 5 cut(s) 147, 372, 579, 693, 891
PctI GAATGC 2 cut(s) 797, 845
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 4 cut(s) 275, 466, 535, 743
PflFI GACNNNGTC 2 cut(s) 581, 1240
PluTI GGCGCC 1 cut(s) 597
Psp6I CCWGG 4 cut(s) 321, 384, 780, 1047
PspFI CCCAGC 6 cut(s) 86, 154, 186, 520, 916, 1117
PspGI CCWGG 4 cut(s) 321, 384, 780, 1047
PspN4I GGNNCC 6 cut(s) 28, 145, 199, 595, 1000, 1065
PspPI GGNCC 4 cut(s) 341, 455, 460, 1242
PstI CTGCAG 1 cut(s) 657
PsyI GACNNNGTC 2 cut(s) 581, 1240
PvuII CAGCTG 2 cut(s) 520, 916
RseI CAYNNNNRTG 1 cut(s) 908
Rsr2I CGGWCCG 1 cut(s) 460
RsrII CGGWCCG 1 cut(s) 460
SalI GTCGAC 2 cut(s) 362, 584
SapI GCTCTTC 1 cut(s) 215
Sau3AI GATC 7 cut(s) 303, 372, 627, 720, 729, 810, 818
Sau96I GGNCC 4 cut(s) 341, 455, 460, 1242
ScrFI CCNGG 9 cut(s) 58, 59, 323, 386, 391, 458, 782, 965, 1049
SduI GDGCHC 1 cut(s) 905
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 653
SfiI GGCCNNNNNGGCC 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 595
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 2 cut(s) 460, 1242
SmaI CCCGGG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
Sse9I AATT 5 cut(s) 445, 529, 828, 880, 1069
SspDI GGCGCC 1 cut(s) 593
StyD4I CCNGG 9 cut(s) 56, 57, 321, 384, 389, 456, 780, 963, 1047
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 2 cut(s) 239, 1033
TaiI ACGT 4 cut(s) 126, 369, 582, 624
TaqI TCGA 7 cut(s) 273, 363, 533, 585, 714, 972, 1276
TasI AATT 5 cut(s) 445, 529, 828, 880, 1069
TauI GCSGC 7 cut(s) 267, 291, 294, 342, 669, 988, 999
TfiI GAWTC 4 cut(s) 275, 466, 535, 743
TscAI CASTG 4 cut(s) 242, 912, 1108, 1254
TseI GCWGC 4 cut(s) 913, 1018, 1057, 1129
TspDTI ATGAA 5 cut(s) 118, 406, 790, 974, 1133
TspGWI ACGGA 4 cut(s) 205, 349, 664, 831
TspMI CCCGGG 1 cut(s) 57
TspRI CASTG 4 cut(s) 242, 912, 1108, 1254
Tth111I GACNNNGTC 2 cut(s) 581, 1240
VpaK11BI GGWCC 2 cut(s) 460, 1242
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 3 cut(s) 529, 828, 1069
XmaI CCCGGG 1 cut(s) 57
XmiI GTMKAC 4 cut(s) 160, 363, 585, 618
ZraI GACGTC 3 cut(s) 367, 580, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.