Rorug02G0063300

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009907
Physical Location & Seq
Forward (+)
4970823 .. 4972306
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0063300.1

Sequence Viewer

Length: 1260 bp
ATGCAGGCATCTACTTTCAAAGCAAAAACATGGGCAGAGATAGGTGATGAATTATTTGCACAAGTAGGCAAAAGATTTGCTCTTGACCAGCTCACTGGTAAATTTAATAGGCTATGCATTTTACATCGTGAATTCTCAGATTTATTAGAGCATACAGGATTTGGGTGGGATCCTGTATCCAACACAGTAACTGCATCTCCAGATGTTTTGGTTAATTATCTTCAGAAAAAGCCAAAGATGAAGAAATTTCGGCTTAAAGGCTTGGCCCACTATGAAACTCTAGGTGAAATATTCAACACCACTACTACAACAGGTCAAATGCATTATGCATCTGGCCAAGTTCCACAAAACTCTGATGAGGAGCGTCAATTAGAGCATAGATTTCTAAACACGGGTGTTCACGTAAAGATTCATGATAAAGTTGATGATGTAGATGTCATTAATATTGATGGAGAATGTGATGGAGGTAAAGGAAAAAGAAAATCTACAACTGATGCCCCTTCTTCATATGATCGAAAGCCAAAGAAATGGGAAAAAATGGAGAGTTATTTGGATGTTTGTAGTGAAGTCATGGCTGAAAAATTGAAGCGTCAAAAGGACAAAAGTACTTCTGAGCTGCCAGGTTATGAAGACACGAGATGGCCAGAGTACCAGCTCCGTCAGATCTACGACTTGGTTCCGCTCGCTGGTCCTGTTGACAAGTTAAAATGGTTTCAGTTGGTATTAATCAATGTCATGTACGTAGACACGAGTATGGCACCAAGACTAATACCATATCGCCCAGAGGCGGAGCTCCTTCGGATCTACATGGTGCGTTCATACAGTAGGGGATATAGGAGGTCTGCGGCGCCTCCTAGTGAGGAGCCTGTTTGGTATGGTGTGGTTTGTAAGGTCTGTGAGGAGGAAGTATGTACCACCCAAGATTATCCTAGCTTGAAGGATAATCATTGGTTGCAAAAACATGCTTTGATGCACAGTGAGTACTTGTCTATGGATGGCCCTACAGTACCAGAACCAGATTACTACAAAGAGCTGCTGAACCCTGAAGGCTTAATCGTGCATGATGATGCACCACTGCAAGAGGGATTTGTAAAGATTTGTCGGAGGTGTCGGTCTGAAAATTGTAGCAGCGGTGTGTATAGAGCTGTTATGATGGATTGTGTCATTTGTAATGAATCTGGTACCCACCTGTCTTGGAATTGTCCTACAGGAAATTGGGAGCCTGGACGGCCGCCTACACCGTGCAACCGCTCAGACTGA

Protein Analysis

419

Amino Acids

48.07

Weight (kDa)

6.1

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 3 - 69 2.1e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1181
AccB1I GGYRCC 3 cut(s) 757, 847, 1181
AccBSI CCGCTC 2 cut(s) 682, 1251
AccI GTMKAC 1 cut(s) 744
AciI CCGC 6 cut(s) 680, 788, 845, 1131, 1232, 1249
AclWI GGATC 3 cut(s) 164, 177, 809
AcoI YGGCCR 3 cut(s) 334, 641, 1229
AcsI RAATTY 3 cut(s) 101, 131, 245
AcuI CTGAAG 2 cut(s) 206, 1065
AcyI GRCGYC 1 cut(s) 848
AfaI GTAC 7 cut(s) 607, 650, 740, 913, 983, 1008, 1183
AfiI CCNNNNNNNGG 2 cut(s) 686, 787
AgsI TTSAA 4 cut(s) 19, 295, 586, 937
AjnI CCWGG 2 cut(s) 619, 1222
AluBI AGCT 7 cut(s) 91, 616, 655, 793, 933, 1033, 1145
AluI AGCT 7 cut(s) 91, 616, 655, 793, 933, 1033, 1145
Alw21I GWGCWC 1 cut(s) 795
AlwI GGATC 3 cut(s) 164, 177, 809
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 5 cut(s) 264, 334, 641, 997, 1229
ApeKI GCWGC 3 cut(s) 616, 1033, 1128
ApoI RAATTY 3 cut(s) 101, 131, 245
AseI ATTAAT 2 cut(s) 441, 725
Asp718I GGTACC 1 cut(s) 1181
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 3 cut(s) 265, 689, 998
AsuHPI GGTGA 2 cut(s) 56, 296
AvaII GGWCC 1 cut(s) 689
BalI TGGCCA 2 cut(s) 336, 643
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 3 cut(s) 757, 847, 1181
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 2 cut(s) 634, 748
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 603, 1020, 1140
BccI CCATC 5 cut(s) 443, 455, 633, 989, 1147
BceAI ACGGC 1 cut(s) 1244
BciT130I CCWGG 2 cut(s) 621, 1224
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 3 cut(s) 281, 855, 930
BfmI CTRYAG 2 cut(s) 1002, 1206
BfoI RGCGCY 1 cut(s) 851
BfuI GTATCC 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 1228
BglII AGATCT 1 cut(s) 663
BisI GCNGC 5 cut(s) 617, 846, 1034, 1129, 1232
BlsI GCNGC 5 cut(s) 618, 847, 1035, 1130, 1233
BmcAI AGTACT 2 cut(s) 607, 983
Bme1390I CCNGG 2 cut(s) 621, 1224
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 3 cut(s) 265, 689, 998
BmiI GGNNCC 7 cut(s) 171, 678, 759, 849, 864, 1183, 1221
BmrFI CCNGG 2 cut(s) 621, 1224
BmsI GCATC 6 cut(s) 17, 203, 338, 484, 960, 1057
BpiI GAAGAC 1 cut(s) 636
BpmI CTGGAG 1 cut(s) 183
BsaAI YACGTR 2 cut(s) 403, 742
BsaHI GRCGYC 1 cut(s) 848
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 787
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 621, 1224
BseGI GGATG 2 cut(s) 559, 1000
BseLI CCNNNNNNNGG 2 cut(s) 686, 787
BseMII CTCAG 2 cut(s) 150, 603
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 3 cut(s) 374, 875, 914
BseX3I CGGCCG 1 cut(s) 1229
BseXI GCAGC 3 cut(s) 603, 1020, 1140
Bsh1285I CGRYCG 1 cut(s) 1232
BshFI GGCC 5 cut(s) 266, 336, 643, 999, 1231
BshNI GGYRCC 3 cut(s) 757, 847, 1181
BsiEI CGRYCG 1 cut(s) 1232
BsiHKAI GWGCWC 1 cut(s) 795
BslI CCNNNNNNNGG 2 cut(s) 686, 787
BsnI GGCC 5 cut(s) 266, 336, 643, 999, 1231
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 4 cut(s) 169, 511, 663, 801
BspACI CCGC 6 cut(s) 680, 788, 845, 1131, 1232, 1249
BspANI GGCC 5 cut(s) 266, 336, 643, 999, 1231
BspCNI CTCAG 2 cut(s) 149, 604
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 7 cut(s) 171, 678, 759, 849, 864, 1183, 1221
BspPI GGATC 3 cut(s) 164, 177, 809
BspT107I GGYRCC 3 cut(s) 757, 847, 1181
BsrBI CCGCTC 2 cut(s) 682, 1251
BsrI ACTGG 1 cut(s) 100
BssMI GATC 4 cut(s) 169, 511, 663, 801
BssNI GRCGYC 1 cut(s) 848
BssSI CACGAG 2 cut(s) 634, 748
Bst2BI CACGAG 2 cut(s) 634, 748
Bst2UI CCWGG 2 cut(s) 621, 1224
Bst4CI ACNGT 5 cut(s) 187, 824, 977, 1006, 1242
BstACI GRCGYC 1 cut(s) 848
BstBAI YACGTR 2 cut(s) 403, 742
BstC8I GCNNGC 2 cut(s) 6, 684
BstDEI CTNAG 3 cut(s) 136, 612, 1252
BstF5I GGATG 2 cut(s) 559, 1000
BstH2I RGCGCY 1 cut(s) 851
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 4 cut(s) 172, 514, 666, 804
BstMBI GATC 4 cut(s) 169, 511, 663, 801
BstMCI CGRYCG 1 cut(s) 1232
BstMWI GCNNNNNNNGC 1 cut(s) 1228
BstNI CCWGG 2 cut(s) 621, 1224
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 2 cut(s) 619, 1222
BstSFI CTRYAG 2 cut(s) 1002, 1206
BstSNI TACGTA 1 cut(s) 742
BstV1I GCAGC 3 cut(s) 603, 1020, 1140
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 3 cut(s) 169, 663, 801
BstXI CCANNNNNNTGG 2 cut(s) 95, 528
BstYI RGATCY 3 cut(s) 169, 663, 801
BstZI CGGCCG 1 cut(s) 1229
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 5 cut(s) 266, 336, 643, 999, 1231
BtsCI GGATG 2 cut(s) 559, 1000
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 3 cut(s) 93, 982, 1073
Cac8I GCNNGC 2 cut(s) 6, 684
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 850
Cfr13I GGNCC 3 cut(s) 265, 689, 998
CseI GACGC 2 cut(s) 353, 578
Csp6I GTAC 7 cut(s) 606, 649, 739, 912, 982, 1007, 1182
CspCI CAANNNNNGTGG 2 cut(s) 1175, 1210
CviAII CATG 7 cut(s) 30, 413, 571, 736, 808, 962, 1061
CviQI GTAC 7 cut(s) 606, 649, 739, 912, 982, 1007, 1182
DdeI CTNAG 3 cut(s) 136, 612, 1252
DinI GGCGCC 1 cut(s) 849
DpnI GATC 4 cut(s) 171, 513, 665, 803
DpnII GATC 4 cut(s) 169, 511, 663, 801
EaeI YGGCCR 3 cut(s) 334, 641, 1229
EagI CGGCCG 1 cut(s) 1229
EciI GGCGGA 1 cut(s) 803
Ecl136II GAGCTC 1 cut(s) 793
EclXI CGGCCG 1 cut(s) 1229
Eco105I TACGTA 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 689
Eco52I CGGCCG 1 cut(s) 1229
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 2 cut(s) 206, 1065
EcoICRI GAGCTC 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 619, 1222
EcoT22I ATGCAT 3 cut(s) 119, 324, 331
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 849
EheI GGCGCC 1 cut(s) 849
FaeI CATG 7 cut(s) 33, 416, 574, 739, 811, 965, 1064
FatI CATG 7 cut(s) 29, 412, 570, 735, 807, 961, 1060
FauNDI CATATG 1 cut(s) 508
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 617, 846, 1034, 1129, 1232
FokI GGATG 2 cut(s) 566, 1007
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 5 cut(s) 617, 846, 1034, 1129, 1232
FspBI CTAG 3 cut(s) 281, 855, 930
GlaI GCGC 1 cut(s) 849
GluI GCNGC 5 cut(s) 617, 846, 1034, 1129, 1232
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 851
HaeIII GGCC 5 cut(s) 266, 336, 643, 999, 1231
HgaI GACGC 2 cut(s) 353, 578
HhaI GCGC 1 cut(s) 850
Hin1I GRCGYC 1 cut(s) 848
Hin1II CATG 7 cut(s) 33, 416, 574, 739, 811, 965, 1064
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 2 cut(s) 409, 1175
HphI GGTGA 2 cut(s) 56, 296
Hpy166II GTNNAC 3 cut(s) 400, 697, 745
Hpy188I TCNGA 9 cut(s) 139, 225, 355, 613, 663, 801, 1104, 1117, 1255
Hpy188III TCNNGA 4 cut(s) 83, 128, 200, 413
Hpy8I GTNNAC 3 cut(s) 400, 697, 745
HpyAV CCTTC 4 cut(s) 510, 806, 931, 1040
HpyCH4III ACNGT 5 cut(s) 187, 824, 977, 1006, 1242
HpyCH4IV ACGT 2 cut(s) 402, 741
HpyF10VI GCNNNNNNNGC 1 cut(s) 1228
HpyF3I CTNAG 3 cut(s) 136, 612, 1252
HpySE526I ACGT 2 cut(s) 402, 741
Hsp92I GRCGYC 1 cut(s) 848
Hsp92II CATG 7 cut(s) 33, 416, 574, 739, 811, 965, 1064
HspAI GCGC 1 cut(s) 848
KasI GGCGCC 1 cut(s) 847
KpnI GGTACC 1 cut(s) 1185
Kzo9I GATC 4 cut(s) 169, 511, 663, 801
LmnI GCTCC 6 cut(s) 361, 660, 790, 798, 862, 1219
Lsp1109I GCAGC 3 cut(s) 603, 1020, 1140
LweI GCATC 6 cut(s) 17, 203, 338, 484, 960, 1057
MaeI CTAG 3 cut(s) 281, 855, 930
MaeII ACGT 2 cut(s) 402, 741
MaeIII GTNAC 1 cut(s) 187
MalI GATC 4 cut(s) 171, 513, 665, 803
MbiI CCGCTC 2 cut(s) 682, 1251
MboI GATC 4 cut(s) 169, 511, 663, 801
MboII GAAGA 4 cut(s) 212, 253, 495, 641
MflI RGATCY 3 cut(s) 169, 663, 801
MhlI GDGCHC 1 cut(s) 795
MlsI TGGCCA 2 cut(s) 336, 643
MluNI TGGCCA 2 cut(s) 336, 643
Mly113I GGCGCC 1 cut(s) 848
MmeI TCCRAC 2 cut(s) 204, 1082
Mox20I TGGCCA 2 cut(s) 336, 643
Mph1103I ATGCAT 3 cut(s) 119, 324, 331
MscI TGGCCA 2 cut(s) 336, 643
MseI TTAA 7 cut(s) 105, 213, 255, 441, 704, 725, 1052
MslI CAYNNNNRTG 2 cut(s) 752, 1065
Msp20I TGGCCA 2 cut(s) 336, 643
MspA1I CMGCKG 1 cut(s) 1131
MspR9I CCNGG 2 cut(s) 621, 1224
MvaI CCWGG 2 cut(s) 621, 1224
MwoI GCNNNNNNNGC 1 cut(s) 1228
NarI GGCGCC 1 cut(s) 848
NdeI CATATG 1 cut(s) 508
NdeII GATC 4 cut(s) 169, 511, 663, 801
NlaIII CATG 7 cut(s) 33, 416, 574, 739, 811, 965, 1064
NlaIV GGNNCC 7 cut(s) 171, 678, 759, 849, 864, 1183, 1221
NsiI ATGCAT 3 cut(s) 119, 324, 331
NspI RCATGY 1 cut(s) 965
PagI TCATGA 1 cut(s) 412
PfeI GAWTC 2 cut(s) 409, 1175
PkrI GCNGC 5 cut(s) 618, 847, 1035, 1130, 1233
PluTI GGCGCC 1 cut(s) 851
Ppu21I YACGTR 2 cut(s) 403, 742
PshBI ATTAAT 2 cut(s) 441, 725
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 619, 1222
PspGI CCWGG 2 cut(s) 619, 1222
PspN4I GGNNCC 7 cut(s) 171, 678, 759, 849, 864, 1183, 1221
PspPI GGNCC 3 cut(s) 265, 689, 998
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 3 cut(s) 169, 663, 801
RsaI GTAC 7 cut(s) 607, 650, 740, 913, 983, 1008, 1183
RsaNI GTAC 7 cut(s) 606, 649, 739, 912, 982, 1007, 1182
RseI CAYNNNNRTG 2 cut(s) 752, 1065
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 7 cut(s) 105, 213, 255, 441, 704, 725, 1052
SatI GCNGC 5 cut(s) 617, 846, 1034, 1129, 1232
Sau3AI GATC 4 cut(s) 169, 511, 663, 801
Sau96I GGNCC 3 cut(s) 265, 689, 998
ScaI AGTACT 2 cut(s) 607, 983
ScrFI CCNGG 2 cut(s) 621, 1224
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 6 cut(s) 17, 203, 338, 484, 960, 1057
SfcI CTRYAG 2 cut(s) 1002, 1206
SfoI GGCGCC 1 cut(s) 849
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 752, 1065
SnaBI TACGTA 1 cut(s) 742
SsiI CCGC 6 cut(s) 680, 788, 845, 1131, 1232, 1249
SspDI GGCGCC 1 cut(s) 847
SspI AATATT 2 cut(s) 291, 445
SspMI CTAG 3 cut(s) 281, 855, 930
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 2 cut(s) 619, 1222
TaaI ACNGT 5 cut(s) 187, 824, 977, 1006, 1242
TaiI ACGT 2 cut(s) 405, 744
TaqI TCGA 1 cut(s) 514
TaqII GACCGA 1 cut(s) 1101
TatI WGTACW 2 cut(s) 605, 981
TauI GCSGC 2 cut(s) 848, 1234
TfiI GAWTC 2 cut(s) 409, 1175
Tru1I TTAA 7 cut(s) 105, 213, 255, 441, 704, 725, 1052
Tru9I TTAA 7 cut(s) 105, 213, 255, 441, 704, 725, 1052
TscAI CASTG 3 cut(s) 100, 982, 1080
TseI GCWGC 3 cut(s) 616, 1033, 1128
TspDTI ATGAA 8 cut(s) 63, 254, 288, 401, 495, 642, 807, 1188
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 3 cut(s) 100, 982, 1080
VpaK11BI GGWCC 1 cut(s) 689
VspI ATTAAT 2 cut(s) 441, 725
XapI RAATTY 3 cut(s) 101, 131, 245
XceI RCATGY 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 3 cut(s) 281, 855, 930
ZrmI AGTACT 2 cut(s) 607, 983
Zsp2I ATGCAT 3 cut(s) 119, 324, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.