Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009907

Physical Location & Seq

Genomic Coordinates Reverse (-)

17829746 .. 17832287

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTGGTGTTTGACAAAGAAGCGAGCTCATCCTCACAAACACTCCCGCCTTTTCCTAGAGAAGACACTCCACTTCTAGCCAGACCTCGCAAGCTCTCATCCCAAGGCAAGACCTTTGCCAACGTCTTCATAGCCATAGTGGGTTCAGGCGTGCTGGGTCTCCCGTACACTTTCAAGAAAACCGGATGGGTCTTCGGCTCTCTCATGCTCTTCTCTGTGGCTTTCTTCACCTACTACTGTATGATGCTCCTAATTCACACTCGTCGGAAGCTCGATTCTGTCCATGGCCTCTCAAAGATCGCATCTTTTGGCGACCTGGGCTTCGCTGTGTGTGGCCCAATTGGACGACTCTCAGTTGACATCATGATCGTGCTTGCTCAGGCTGGTTTCTGTGTGAGCTATCTAATTTTTATATCAAACACTTTGGCTTTTGTTATCAACTACTCTGGACCAGATCGAATTCTGGGCCTTGCCCCAAAATCCTTGTACCTTTGGGCTTGTTTTCCATTTCAGCTGGGATTGAATTCGATTCCCACGCTGACCCATTTGGCCCCTTTGAGCATTTTCGCTGATGTTATTGATCTTGGAGCTATGGGGGTTGTGATGGTGGAGGATGTTATGATTTTTCTGCAAAATAGGCCAGCTCTGCAGGCTTTTGGAGGCTTCTCTGTTTTCTTCTATGGTCTTGGTGTGGCTGTTTATGCCTTTGAAGGAATTGGAATGATATTACCATTGGAATCAGAGGCTAAAGACAAAGACAAGTTTGGTAAAGTCTTGGCCTTGTGTATGGCTTTCATTGCTTTGTTGTATGGATCATTTGGAGTTCTGGGTTACTTTGCTTTTGGTGAAGAGACCAAAGACATAATCACCACCAATTTTGGGCAAGGCTTGGTGAGCACTCTGGTGCAGATGGGTCTCTGCATTAACCTCTTTTTCACATTACCATTGATGATGAACCCTGTTTTCGAAGTGGTGGAGAGAAGGTTCAATGATTCTAGGTACTGCCTGTGGCTGAGGTGGGTGATGGTGTTTGTGGTCAGCTTGGTAGCTCTTTTGGTGCCTAATTTTGCAGACTTTTTGTCTCTGGTTGGGAGCAGTGTGTGTGTTGCTCTGGGCTTTGTGTTGCCTGCTTTGTTTCATTTGATGGTGTTCAAGGAAGAACTGAGTTGGCATGGGATGCTTTTGGATGGGACTATTGTGGTTCTTGGTGTGGTTATTGGAGTCTCTGGAACTTGGTCTTCAATAGCAGCGATTCTTGCACCCACAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

424

Amino Acids

46.15

Weight (kDa)

6.52

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65990
fragaria_vesca	FvH4_1g10240
malus_domestica	MD02G1114400.v1.1 MD15G1230000.v1.1
prunus_persica	Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1
pyrus_communis	pycom02g08930 pycom15g20520
rosa_chinensis	RchiOBHm_Chr2g0097061
rosa_laevigata	RLG00000016699
rosa_multiflora	Rmu_co8492857.1_g000002 Rmu_sc0006853.1_g000002 Rmu_sc0017953.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145010
rosa_rugosa	Rorug02G0063300
rosa_samantha	Rh2AG110900 Rh2BG112800 Rh2CG115000 Rh2DG114200
rosa_wichuraiana	Rw2G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1057
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	2 cut(s)	459, 523
AfaI	GTAC	3 cut(s)	167, 488, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	879
AgsI	TTSAA	6 cut(s)	175, 523, 710, 988, 1153, 1242
AhdI	GACNNNNNGTC	1 cut(s)	1078
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	902
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
AluBI	AGCT	9 cut(s)	27, 94, 271, 399, 514, 590, 644, 1041, 1049
AluI	AGCT	9 cut(s)	27, 94, 271, 399, 514, 590, 644, 1041, 1049
Alw21I	GWGCWC	2 cut(s)	29, 899
Alw26I	GTCTC	5 cut(s)	164, 845, 920, 1086, 1228
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	6 cut(s)	286, 334, 466, 549, 638, 777
ApeKI	GCWGC	1 cut(s)	1247
ApoI	RAATTY	2 cut(s)	459, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	4 cut(s)	335, 449, 466, 550
AsuHPI	GGTGA	5 cut(s)	220, 857, 859, 904, 1033
AsuII	TTCGAA	1 cut(s)	966
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	1057
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	4 cut(s)	69, 118, 184, 1230
Bbv12I	GWGCWC	2 cut(s)	29, 899
BbvCI	CCTCAGC	1 cut(s)	1013
BbvI	GCAGC	1 cut(s)	1259
BccI	CCATC	6 cut(s)	180, 598, 904, 1018, 1138, 1181
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	5 cut(s)	164, 845, 920, 1086, 1228
BfaI	CTAG	3 cut(s)	57, 77, 996
BfmI	CTRYAG	1 cut(s)	647
BisI	GCNGC	1 cut(s)	1248
BlsI	GCNGC	1 cut(s)	1249
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	449
BmeRI	GACNNNNNGTC	1 cut(s)	1078
BmgT120I	GGNCC	4 cut(s)	335, 449, 466, 550
BmiI	GGNNCC	2 cut(s)	552, 1059
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	234, 311, 1167
BpiI	GAAGAC	4 cut(s)	69, 118, 184, 1230
Bpu10I	CCTNAGC	2 cut(s)	378, 1013
Bpu14I	TTCGAA	1 cut(s)	966
BsaI	GGTCTC	3 cut(s)	164, 845, 920
BsaJI	CCNNGG	3 cut(s)	103, 283, 316
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 968, 998
Bsc4I	CCNNNNNNNGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	103, 283, 316
BseGI	GGATG	6 cut(s)	29, 98, 191, 619, 1182, 1192
BseLI	CCNNNNNNNGG	1 cut(s)	879
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	366, 392, 1004, 1154
BseXI	GCAGC	1 cut(s)	1259
BseYI	CCCAGC	2 cut(s)	154, 514
BsgI	GTGCAG	1 cut(s)	926
BshFI	GGCC	6 cut(s)	288, 336, 468, 551, 640, 779
BshNI	GGYRCC	1 cut(s)	1057
BsiHKAI	GWGCWC	2 cut(s)	29, 899
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	1204
BslI	CCNNNNNNNGG	1 cut(s)	879
BsmAI	GTCTC	5 cut(s)	164, 845, 920, 1086, 1228
BsmFI	GGGAC	1 cut(s)	1204
BsnI	GGCC	6 cut(s)	288, 336, 468, 551, 640, 779
Bso31I	GGTCTC	3 cut(s)	164, 845, 920
Bsp119I	TTCGAA	1 cut(s)	966
Bsp1286I	GDGCHC	2 cut(s)	29, 899
Bsp143I	GATC	5 cut(s)	297, 366, 454, 580, 812
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	6 cut(s)	288, 336, 468, 551, 640, 779
BspCNI	CTCAG	4 cut(s)	365, 391, 1005, 1155
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	552, 1059
BspMAI	CTGCAG	1 cut(s)	651
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	966
BspT107I	GGYRCC	1 cut(s)	1057
BspTNI	GGTCTC	3 cut(s)	164, 845, 920
BsrDI	GCAATG	1 cut(s)	795
BssECI	CCNNGG	3 cut(s)	103, 283, 316
BssMI	GATC	5 cut(s)	297, 366, 454, 580, 812
BssT1I	CCWWGG	2 cut(s)	103, 283
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	215, 843
BstAPI	GCANNNNNTGC	1 cut(s)	1177
BstBI	TTCGAA	1 cut(s)	966
BstC8I	GCNNGC	7 cut(s)	25, 92, 152, 375, 642, 651, 1128
BstDEI	CTNAG	4 cut(s)	352, 378, 1013, 1163
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	6 cut(s)	29, 98, 191, 619, 1182, 1192
BstKTI	GATC	5 cut(s)	300, 369, 457, 583, 815
BstMAI	GTCTC	5 cut(s)	164, 845, 920, 1086, 1228
BstMBI	GATC	5 cut(s)	297, 366, 454, 580, 812
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	647
BstV1I	GCAGC	1 cut(s)	1259
BstV2I	GAAGAC	4 cut(s)	69, 118, 184, 1230
BsuRI	GGCC	6 cut(s)	288, 336, 468, 551, 640, 779
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	6 cut(s)	29, 98, 191, 619, 1182, 1192
BtsI	GCAGTG	1 cut(s)	1102
BtsIMutI	CAGTG	1 cut(s)	1102
Cac8I	GCNNGC	7 cut(s)	25, 92, 152, 375, 642, 651, 1128
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	4 cut(s)	335, 449, 466, 550
Csp6I	GTAC	3 cut(s)	166, 487, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	4 cut(s)	205, 284, 364, 1172
CviQI	GTAC	3 cut(s)	166, 487, 1000
DdeI	CTNAG	4 cut(s)	352, 378, 1013, 1163
DpnI	GATC	5 cut(s)	299, 368, 456, 582, 814
DpnII	GATC	5 cut(s)	297, 366, 454, 580, 812
DriI	GACNNNNNGTC	1 cut(s)	1078
Eam1104I	CTCTTC	2 cut(s)	215, 843
Eam1105I	GACNNNNNGTC	1 cut(s)	1078
EarI	CTCTTC	2 cut(s)	215, 843
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	103, 283
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	3 cut(s)	164, 845, 920
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRI	GAATTC	2 cut(s)	459, 523
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	103, 283
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	103, 283
FaeI	CATG	4 cut(s)	208, 287, 367, 1175
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	4 cut(s)	204, 283, 363, 1171
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	1248
FokI	GGATG	6 cut(s)	16, 85, 198, 626, 1189, 1199
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	1248
FspBI	CTAG	3 cut(s)	57, 77, 996
GluI	GCNGC	1 cut(s)	1248
GsaI	CCCAGC	2 cut(s)	158, 518
HaeIII	GGCC	6 cut(s)	288, 336, 468, 551, 640, 779
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	4 cut(s)	208, 287, 367, 1175
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	7 cut(s)	275, 348, 529, 737, 992, 1221, 1252
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	5 cut(s)	220, 857, 859, 904, 1033
Hpy166II	GTNNAC	2 cut(s)	168, 358
Hpy188I	TCNGA	2 cut(s)	267, 742
Hpy188III	TCNNGA	4 cut(s)	175, 364, 447, 1227
Hpy8I	GTNNAC	2 cut(s)	168, 358
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	704, 975
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	6 cut(s)	631, 649, 907, 921, 1070, 1259
HpyF3I	CTNAG	4 cut(s)	352, 378, 1013, 1163
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	208, 287, 367, 1175
Kzo9I	GATC	5 cut(s)	297, 366, 454, 580, 812
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	252, 587, 1092
Lsp1109I	GCAGC	1 cut(s)	1259
LweI	GCATC	3 cut(s)	234, 311, 1167
MaeI	CTAG	3 cut(s)	57, 77, 996
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	5 cut(s)	299, 368, 456, 582, 814
MboI	GATC	5 cut(s)	297, 366, 454, 580, 812
MboII	GAAGA	9 cut(s)	74, 118, 184, 202, 217, 667, 860, 1169, 1230
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	29, 899
MluCI	AATT	8 cut(s)	252, 339, 405, 459, 523, 714, 874, 1063
MlyI	GAGTC	2 cut(s)	342, 1230
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	8 cut(s)	43, 96, 299, 604, 653, 736, 938, 1008
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	2 cut(s)	368, 902
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	5 cut(s)	297, 366, 454, 580, 812
NlaIII	CATG	4 cut(s)	208, 287, 367, 1175
NlaIV	GGNNCC	2 cut(s)	552, 1059
NspV	TTCGAA	1 cut(s)	966
OliI	CACNNNNGTG	1 cut(s)	902
PagI	TCATGA	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	215
PfeI	GAWTC	5 cut(s)	275, 529, 737, 992, 1252
PkrI	GCNGC	1 cut(s)	1249
PleI	GAGTC	2 cut(s)	342, 1229
PpsI	GAGTC	2 cut(s)	342, 1229
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	2 cut(s)	154, 514
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	552, 1059
PspPI	GGNCC	4 cut(s)	335, 449, 466, 550
PstI	CTGCAG	1 cut(s)	651
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	167, 488, 1001
RsaNI	GTAC	3 cut(s)	166, 487, 1000
RseI	CAYNNNNRTG	2 cut(s)	368, 902
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	1 cut(s)	1248
Sau3AI	GATC	5 cut(s)	297, 366, 454, 580, 812
Sau96I	GGNCC	4 cut(s)	335, 449, 466, 550
SchI	GAGTC	2 cut(s)	342, 1230
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	29, 899
SfaNI	GCATC	3 cut(s)	234, 311, 1167
SfcI	CTRYAG	1 cut(s)	647
SfuI	TTCGAA	1 cut(s)	966
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	368, 902
Sse9I	AATT	8 cut(s)	252, 339, 405, 459, 523, 714, 874, 1063
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	3 cut(s)	57, 77, 996
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	103, 283
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	273, 457, 527, 966
TasI	AATT	8 cut(s)	252, 339, 405, 459, 523, 714, 874, 1063
TfiI	GAWTC	5 cut(s)	275, 529, 737, 992, 1252
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	1 cut(s)	1102
TseI	GCWGC	1 cut(s)	1247
TspDTI	ATGAA	4 cut(s)	118, 784, 968, 1127
TspRI	CASTG	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	459, 523
XspI	CTAG	3 cut(s)	57, 77, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.