MD15G1230000.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
18848855 .. 18850132
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1230000.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGTGGTGTTCGACAAAGAAGCCAGCTCCTCCACCAACACCCTACCTCCCTTCCCCCGAGAAGACACTCCACTCCTCTCCAAACCCAGCAAGCTCTCCTCCCAACCCAAAACCTTCGCCAACGTCTTCATCGCCATCGTCGGCGCCGGCGTGCTGGGTCTACCCTACACCTTCAAGAAAACCGGCTGGGTCTTCGGCTCCCTCATGCTCTTCTCCGTCGCCTTCCTAACGTACCACTGTATGATGCTCCTAATCCACACCCGCCGCAAGCTCGACTCCCTCCACGGCGGCGGCCTCTCAAAGATCGCGTCTTTCGGCGACCTGGGTTTCGTCGTCTGTGGCCCAATCGGCCGGTTCTCCGTCGACGTCATGATCGTCCTCGCCCAGGCCGGGTTCTGCATCAGCTACCTAATCTTCATATCAAACACTTTAGCCTTCGTCTTCAATTACTCAGGCCCCGACCGGATTCTTGGTCTGACCCCGAAATCAATCTACCTCTGGGGCTGTTTCCCATTCCAGTTGGGTCTGAATTCGATTCCCACCCTGACCCATCTCGCCCCTCTGAGCATATTCGCCGACGTCGTCGACCTCGGCGCCATGGGAGTTGTAATGGTAGAAGACGTCATAATCTTCCTCCAAAACAAACCGGCTCTGCAGGCGTTCGGCGGCTTCTCCGTCTTCTTCTACGGCCTCGGCGTGGCGGTTTACGCCTTCGAGGGAATCGGAATGATCCTCCCCCTCGAATCAGAAGCCAAAAACAAAGAGAATTTCGGGAAAGTCCTGGCATTGTGCATGGCATTCATAGCTCTGATCTACGGATCATTCGGAGTTCTGGGTTACTTTGCATTTGGGGAAGAAACCAAAGACATAATCACCACCAATTTCGGGCAGGGCTTAGTAAGCACACTGGTCCAGCTGGGTTTGTGCATAAACCTGTTCTTCACTCTCCCATTGATGATGAACCCGGTTTTCGAAGTGGTGGAGCGGCGGTTCTGCGGCTCCACCTACTCCCTGTGGGTGCGGTGGCTGCTGGTTTTTGGGGTGAGCCTGGTGGCGCTGCTGGTGCCGAATTTTGCAGATTTTTTGTCGCTGGTGGGGAGCAGCGTGTGTGTGGCGCTGGGGTTTGTGCTGCCTGCTCTGTTTCATCTGATGGTGTTTAGGGATGAGCTGAGTTGGTTTGGGAGCGGTTTGGATGGGTGTATTGTGGTGGTGGGTGTGGTGATTGGGGTGTCTGGGACTTGGTCTTCAGTGGCTGAGATTATTGCACCCAAAGCTTGA

Protein Analysis

426

Amino Acids

45.98

Weight (kDa)

6.21

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 34 - 416 9.5e-73 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 369, 582, 624
AccB1I GGYRCC 3 cut(s) 143, 593, 1063
AccBSI CCGCTC 2 cut(s) 985, 1185
AccI GTMKAC 3 cut(s) 160, 363, 585
AccII CGCG 1 cut(s) 308
AclWI GGATC 2 cut(s) 724, 826
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 3 cut(s) 529, 766, 1069
AcuI CTGAAG 1 cut(s) 1230
AcyI GRCGYC 5 cut(s) 144, 366, 579, 594, 621
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 385, 390, 697, 885
AgsI TTSAA 2 cut(s) 175, 445
AjnI CCWGG 4 cut(s) 321, 384, 780, 1047
AloI GAACNNNNNNTCC 2 cut(s) 974, 1006
AluBI AGCT 8 cut(s) 27, 94, 271, 405, 806, 916, 1168, 1274
AluI AGCT 8 cut(s) 27, 94, 271, 405, 806, 916, 1168, 1274
AlwI GGATC 2 cut(s) 724, 826
AlwNI CAGNNNCTG 1 cut(s) 1253
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 6 cut(s) 292, 340, 349, 387, 454, 688
ApeKI GCWGC 4 cut(s) 1027, 1057, 1101, 1129
ApoI RAATTY 3 cut(s) 529, 766, 1069
ArsI GACNNNNNNTTYG 4 cut(s) 293, 311, 325, 343
AspLEI GCGC 4 cut(s) 146, 596, 1057, 1117
AspS9I GGNCC 3 cut(s) 341, 455, 910
AsuC2I CCSGG 2 cut(s) 391, 965
AsuHPI GGTGA 3 cut(s) 865, 1054, 1231
AsuII TTCGAA 1 cut(s) 972
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 910
BanI GGYRCC 3 cut(s) 143, 593, 1063
BbsI GAAGAC 7 cut(s) 69, 118, 184, 433, 624, 670, 1236
BbvI GCAGC 4 cut(s) 1014, 1044, 1113, 1116
BccI CCATC 4 cut(s) 143, 558, 1144, 1187
BceAI ACGGC 2 cut(s) 301, 703
BciT130I CCWGG 4 cut(s) 323, 386, 782, 1049
BcnI CCSGG 2 cut(s) 391, 965
BfmI CTRYAG 1 cut(s) 653
BfoI RGCGCY 4 cut(s) 147, 597, 1058, 1118
BglI GCCNNNNNGGC 1 cut(s) 348
Bme1390I CCNGG 6 cut(s) 323, 386, 391, 782, 965, 1049
Bme18I GGWCC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 341, 455, 910
BmiI GGNNCC 6 cut(s) 145, 199, 457, 595, 1000, 1065
BmrFI CCNGG 6 cut(s) 323, 386, 391, 782, 965, 1049
BmsI GCATC 2 cut(s) 234, 408
BpiI GAAGAC 7 cut(s) 69, 118, 184, 433, 624, 670, 1236
Bpu14I TTCGAA 1 cut(s) 972
BpuMI CCSGG 2 cut(s) 391, 965
BsaHI GRCGYC 5 cut(s) 144, 366, 579, 594, 621
BsaJI CCNNGG 6 cut(s) 283, 322, 384, 589, 597, 691
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 974, 1004
Bsc4I CCNNNNNNNGG 4 cut(s) 385, 390, 697, 885
Bse118I RCCGGY 4 cut(s) 146, 182, 351, 646
Bse1I ACTGG 2 cut(s) 517, 912
BseBI CCWGG 4 cut(s) 323, 386, 782, 1049
BseDI CCNNGG 6 cut(s) 283, 322, 384, 589, 597, 691
BseGI GGATG 2 cut(s) 1168, 1198
BseLI CCNNNNNNNGG 4 cut(s) 385, 390, 697, 885
BseMII CTCAG 4 cut(s) 465, 554, 1160, 1245
BseNI ACTGG 2 cut(s) 517, 912
BseRI GAGGAG 3 cut(s) 19, 65, 88
BseX3I CGGCCG 1 cut(s) 349
BseXI GCAGC 4 cut(s) 1014, 1044, 1113, 1116
BseYI CCCAGC 5 cut(s) 86, 154, 186, 916, 1117
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 352, 463
BshFI GGCC 6 cut(s) 294, 342, 351, 389, 456, 690
BshNI GGYRCC 3 cut(s) 143, 593, 1063
BsiEI CGRYCG 2 cut(s) 352, 463
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 7 cut(s) 147, 183, 352, 390, 463, 647, 965
BslFI GGGAC 1 cut(s) 1249
BslI CCNNNNNNNGG 4 cut(s) 385, 390, 697, 885
BsmFI GGGAC 1 cut(s) 1249
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 6 cut(s) 294, 342, 351, 389, 456, 690
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 972
Bsp143I GATC 5 cut(s) 303, 372, 729, 810, 818
Bsp19I CCATGG 1 cut(s) 597
BspANI GGCC 6 cut(s) 294, 342, 351, 389, 456, 690
BspCNI CTCAG 4 cut(s) 464, 555, 1161, 1246
BspFNI CGCG 1 cut(s) 308
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 6 cut(s) 145, 199, 457, 595, 1000, 1065
BspMAI CTGCAG 1 cut(s) 657
BspPI GGATC 2 cut(s) 724, 826
BspQI GCTCTTC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 972
BspT107I GGYRCC 3 cut(s) 143, 593, 1063
BsrBI CCGCTC 2 cut(s) 985, 1185
BsrFI RCCGGY 4 cut(s) 146, 182, 351, 646
BsrI ACTGG 2 cut(s) 517, 912
BssAI RCCGGY 4 cut(s) 146, 182, 351, 646
BssECI CCNNGG 6 cut(s) 283, 322, 384, 589, 597, 691
BssMI GATC 5 cut(s) 303, 372, 729, 810, 818
BssNI GRCGYC 5 cut(s) 144, 366, 579, 594, 621
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 4 cut(s) 323, 386, 782, 1049
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 5 cut(s) 144, 366, 579, 594, 621
BstBI TTCGAA 1 cut(s) 972
BstC8I GCNNGC 7 cut(s) 25, 92, 148, 152, 269, 657, 1134
BstDEI CTNAG 5 cut(s) 451, 563, 895, 1169, 1254
BstDSI CCRYGG 2 cut(s) 283, 597
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 2 cut(s) 1168, 1198
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 4 cut(s) 147, 597, 1058, 1118
BstHHI GCGC 4 cut(s) 146, 596, 1057, 1117
BstKTI GATC 5 cut(s) 306, 375, 732, 813, 821
BstMBI GATC 5 cut(s) 303, 372, 729, 810, 818
BstMCI CGRYCG 2 cut(s) 352, 463
BstMWI GCNNNNNNNGC 8 cut(s) 348, 656, 707, 803, 900, 1027, 1063, 1271
BstNI CCWGG 4 cut(s) 323, 386, 782, 1049
BstSCI CCNGG 6 cut(s) 321, 384, 389, 780, 963, 1047
BstSFI CTRYAG 1 cut(s) 653
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 1014, 1044, 1113, 1116
BstV2I GAAGAC 7 cut(s) 69, 118, 184, 433, 624, 670, 1236
BstZI CGGCCG 1 cut(s) 349
BsuRI GGCC 6 cut(s) 294, 342, 351, 389, 456, 690
BtgI CCRYGG 2 cut(s) 283, 597
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 1168, 1198
BtsIMutI CAGTG 3 cut(s) 235, 905, 1254
Cac8I GCNNGC 7 cut(s) 25, 92, 148, 152, 269, 657, 1134
CaiI CAGNNNCTG 1 cut(s) 1253
CciI TCATGA 1 cut(s) 369
CfoI GCGC 4 cut(s) 146, 596, 1057, 1117
Cfr10I RCCGGY 4 cut(s) 146, 182, 351, 646
Cfr13I GGNCC 3 cut(s) 341, 455, 910
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 205, 370, 598, 793
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 5 cut(s) 451, 563, 895, 1169, 1254
DinI GGCGCC 2 cut(s) 145, 595
DpnI GATC 5 cut(s) 305, 374, 731, 812, 820
DpnII GATC 5 cut(s) 303, 372, 729, 810, 818
EaeI YGGCCR 1 cut(s) 349
EagI CGGCCG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 910
Eco52I CGGCCG 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 1230
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 4 cut(s) 321, 384, 780, 1047
EcoT14I CCWWGG 1 cut(s) 597
EgeI GGCGCC 2 cut(s) 145, 595
EheI GGCGCC 2 cut(s) 145, 595
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 4 cut(s) 208, 373, 601, 796
FaqI GGGAC 1 cut(s) 1249
FatI CATG 4 cut(s) 204, 369, 597, 792
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 3 cut(s) 160, 363, 585
FokI GGATG 2 cut(s) 1175, 1205
GlaI GCGC 4 cut(s) 145, 595, 1056, 1116
GsaI CCCAGC 5 cut(s) 90, 158, 190, 920, 1121
HaeII RGCGCY 4 cut(s) 147, 597, 1058, 1118
HaeIII GGCC 6 cut(s) 294, 342, 351, 389, 456, 690
HapII CCGG 7 cut(s) 147, 183, 352, 390, 463, 647, 965
HgaI GACGC 1 cut(s) 297
HhaI GCGC 4 cut(s) 146, 596, 1057, 1117
Hin1I GRCGYC 5 cut(s) 144, 366, 579, 594, 621
Hin1II CATG 4 cut(s) 208, 373, 601, 796
Hin6I GCGC 4 cut(s) 144, 594, 1055, 1115
HinP1I GCGC 4 cut(s) 144, 594, 1055, 1115
HincII GTYRAC 2 cut(s) 364, 586
HindII GTYRAC 2 cut(s) 364, 586
HindIII AAGCTT 1 cut(s) 1272
HinfI GANTC 5 cut(s) 275, 466, 535, 720, 743
HpaII CCGG 7 cut(s) 147, 183, 352, 390, 463, 647, 965
HphI GGTGA 3 cut(s) 865, 1054, 1231
Hpy166II GTNNAC 4 cut(s) 161, 364, 586, 706
Hpy188I TCNGA 8 cut(s) 477, 528, 564, 725, 748, 810, 827, 1149
Hpy188III TCNNGA 3 cut(s) 175, 370, 772
Hpy8I GTNNAC 4 cut(s) 161, 364, 586, 706
Hpy99I CGWCG 8 cut(s) 143, 221, 335, 365, 368, 581, 584, 587
HpyAV CCTTC 6 cut(s) 61, 124, 181, 232, 445, 721
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 5 cut(s) 123, 230, 366, 579, 621
HpyCH4V TGCA 7 cut(s) 399, 655, 792, 845, 927, 1076, 1265
HpyF10VI GCNNNNNNNGC 8 cut(s) 348, 656, 707, 803, 900, 1027, 1063, 1271
HpyF3I CTNAG 5 cut(s) 451, 563, 895, 1169, 1254
HpySE526I ACGT 5 cut(s) 123, 230, 366, 579, 621
Hsp92I GRCGYC 5 cut(s) 144, 366, 579, 594, 621
Hsp92II CATG 4 cut(s) 208, 373, 601, 796
HspAI GCGC 4 cut(s) 144, 594, 1055, 1115
KasI GGCGCC 2 cut(s) 143, 593
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 5 cut(s) 303, 372, 729, 810, 818
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 7 cut(s) 32, 203, 252, 982, 1004, 1098, 1182
Lsp1109I GCAGC 4 cut(s) 1014, 1044, 1113, 1116
LweI GCATC 2 cut(s) 234, 408
MaeII ACGT 5 cut(s) 123, 230, 366, 579, 621
MaeIII GTNAC 1 cut(s) 836
MalI GATC 5 cut(s) 305, 374, 731, 812, 820
MbiI CCGCTC 2 cut(s) 985, 1185
MboI GATC 5 cut(s) 303, 372, 729, 810, 818
MluCI AATT 5 cut(s) 445, 529, 766, 880, 1069
Mly113I GGCGCC 2 cut(s) 144, 594
MlyI GAGTC 1 cut(s) 269
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 916
MspI CCGG 7 cut(s) 147, 183, 352, 390, 463, 647, 965
MspR9I CCNGG 6 cut(s) 323, 386, 391, 782, 965, 1049
Mva1269I GAATGC 1 cut(s) 797
MvaI CCWGG 4 cut(s) 323, 386, 782, 1049
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 8 cut(s) 348, 656, 707, 803, 900, 1027, 1063, 1271
NaeI GCCGGC 1 cut(s) 148
NarI GGCGCC 2 cut(s) 144, 594
NciI CCSGG 2 cut(s) 391, 965
NcoI CCATGG 1 cut(s) 597
NdeII GATC 5 cut(s) 303, 372, 729, 810, 818
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 4 cut(s) 208, 373, 601, 796
NlaIV GGNNCC 6 cut(s) 145, 199, 457, 595, 1000, 1065
NmeAIII GCCGAG 2 cut(s) 570, 672
NspV TTCGAA 1 cut(s) 972
PagI TCATGA 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 4 cut(s) 147, 372, 579, 693
PctI GAATGC 1 cut(s) 797
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 466, 535, 720, 743
PflFI GACNNNGTC 2 cut(s) 581, 1240
PleI GAGTC 1 cut(s) 269
PluTI GGCGCC 2 cut(s) 147, 597
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 4 cut(s) 321, 384, 780, 1047
PspFI CCCAGC 5 cut(s) 86, 154, 186, 916, 1117
PspGI CCWGG 4 cut(s) 321, 384, 780, 1047
PspN4I GGNNCC 6 cut(s) 145, 199, 457, 595, 1000, 1065
PspPI GGNCC 3 cut(s) 341, 455, 910
PstI CTGCAG 1 cut(s) 657
PstNI CAGNNNCTG 1 cut(s) 1253
PsyI GACNNNGTC 2 cut(s) 581, 1240
PvuII CAGCTG 1 cut(s) 916
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SalI GTCGAC 2 cut(s) 362, 584
SapI GCTCTTC 1 cut(s) 215
Sau3AI GATC 5 cut(s) 303, 372, 729, 810, 818
Sau96I GGNCC 3 cut(s) 341, 455, 910
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 6 cut(s) 323, 386, 391, 782, 965, 1049
SfaNI GCATC 2 cut(s) 234, 408
SfcI CTRYAG 1 cut(s) 653
SfiI GGCCNNNNNGGCC 1 cut(s) 348
SfoI GGCGCC 2 cut(s) 145, 595
SfuI TTCGAA 1 cut(s) 972
SgrAI CRCCGGYG 1 cut(s) 146
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 1 cut(s) 910
Sse9I AATT 5 cut(s) 445, 529, 766, 880, 1069
SspDI GGCGCC 2 cut(s) 143, 593
StyD4I CCNGG 6 cut(s) 321, 384, 389, 780, 963, 1047
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 5 cut(s) 126, 233, 369, 582, 624
TaqI TCGA 8 cut(s) 12, 273, 363, 533, 585, 714, 741, 972
TasI AATT 5 cut(s) 445, 529, 766, 880, 1069
TauI GCSGC 6 cut(s) 267, 291, 294, 669, 988, 999
TfiI GAWTC 4 cut(s) 466, 535, 720, 743
TscAI CASTG 3 cut(s) 242, 912, 1254
TseI GCWGC 4 cut(s) 1027, 1057, 1101, 1129
TspDTI ATGAA 5 cut(s) 118, 406, 790, 974, 1133
TspGWI ACGGA 4 cut(s) 205, 349, 664, 831
TspRI CASTG 3 cut(s) 242, 912, 1254
Tth111I GACNNNGTC 2 cut(s) 581, 1240
VpaK11BI GGWCC 1 cut(s) 910
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 3 cut(s) 529, 766, 1069
XmiI GTMKAC 3 cut(s) 160, 363, 585
ZraI GACGTC 3 cut(s) 367, 580, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.