Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492857.1

Orthogroup ID

OG0009907

Physical Location & Seq

Genomic Coordinates Reverse (-)

1405 .. 2598

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492857.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ggaaaacgctcccatctctcctcacagtccaagacattcgccaacgtcttcatcgccatcgtcggctccggcgtgctgggcctcccctacaccttcaagaagaccggatgggttttcggctctgttatgctcttctctgtggcttttcttacctaccactgtatgatgcttctggtcaaaacccgccggaggctcgagtccgatatggccctctccaaggtcaactctttcggcgatctggcctttgccgtttgcggcccagttggtcgatttgcggttgatgtcagcatcgtgctggctcaggctgggttctgcgttagttacatgattttcatatcgaatagtttggcatatgtgttcaactattctggacctgatcgagttctgggtatgagtccgaaaagcttgtatgtttgggggtgttttccatttcaattggggttgaattcgattcccacactgacccatttggctcctttgagtatttttgctgatgtggttgatcttggagctatgggagttgttatggttgaggatgtaatgatttttctgcagaatcggcctgctttgcaagcatttgggggcttttcggttttcttctatggtcttggtgtggctgtttatgcatttgaagggattgggatgatattgccattggaatctgaggccagagacaaggacaagtttggcagagtgttggctttggttatggccttcattgctttgttgtatggaagctttggggttctgggttactttgcttttggggaagagactaaagacataatcactaccaactttgggcaaggcttggtgagcactctagtccagttgggtctctgcataaacttgttctttactctaccattgatgatgaacccggttttcgaggttgtggagaggaggttttgggatggggggtactgcttgtggctgaggtgggttatggtgtttggggtctgcttggtggctcttacagtgcctaattttgcagactttttgtcactggtggggagcagtgtttgtgtggctttagggtttgtgtttcctgctttgttccatttgatggtgttcaaggaagagttggggtggcatgggatggttttggatgggactattgtggttattggggtgattattggagtctctggaacttggtcttcgatagcagagattgttgcacccaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

397

Amino Acids

43.27

Weight (kDa)

6.57

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65990
fragaria_vesca	FvH4_1g10240
malus_domestica	MD02G1114400.v1.1 MD15G1230000.v1.1
prunus_persica	Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1
pyrus_communis	pycom02g08930 pycom15g20520
rosa_chinensis	RchiOBHm_Chr2g0097061
rosa_laevigata	RLG00000016699
rosa_multiflora	Rmu_co8492857.1_g000002 Rmu_sc0006853.1_g000002 Rmu_sc0017953.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145010
rosa_rugosa	Rorug02G0063300
rosa_samantha	Rh2AG110900 Rh2BG112800 Rh2CG115000 Rh2DG114200
rosa_wichuraiana	Rw2G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1066
AciI	CCGC	3 cut(s)	184, 255, 275
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	4 cut(s)	189, 217, 801, 1066
AgsI	TTSAA	6 cut(s)	97, 361, 434, 445, 632, 1075
AhdI	GACNNNNNGTC	1 cut(s)	1000
AluBI	AGCT	4 cut(s)	405, 512, 738, 1190
AluI	AGCT	4 cut(s)	405, 512, 738, 1190
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	4 cut(s)	666, 767, 842, 1150
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	7 cut(s)	79, 207, 240, 256, 560, 666, 711
ApoI	RAATTY	1 cut(s)	445
AspS9I	GGNCC	4 cut(s)	79, 208, 257, 371
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	2 cut(s)	826, 1144
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	371
BbsI	GAAGAC	3 cut(s)	40, 107, 1152
Bbv12I	GWGCWC	1 cut(s)	821
BbvCI	CCTCAGC	1 cut(s)	935
BccI	CCATC	7 cut(s)	21, 65, 102, 908, 1060, 1093, 1103
BceAI	ACGGC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	4 cut(s)	666, 767, 842, 1150
BfaI	CTAG	1 cut(s)	824
BfmI	CTRYAG	1 cut(s)	551
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	1 cut(s)	371
BmeRI	GACNNNNNGTC	1 cut(s)	1000
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	4 cut(s)	79, 208, 257, 371
BmiI	GGNNCC	2 cut(s)	67, 474
BmrFI	CCNGG	1 cut(s)	881
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	156, 297
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	3 cut(s)	40, 107, 1152
Bpu10I	CCTNAGC	2 cut(s)	300, 935
BpuMI	CCSGG	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 217, 801, 1066
Bse1I	ACTGG	3 cut(s)	260, 829, 1011
Bse3DI	GCAATG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	6 cut(s)	113, 541, 648, 919, 1104, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	189, 217, 801, 1066
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	314, 654, 926
BseNI	ACTGG	3 cut(s)	260, 829, 1011
BseRI	GAGGAG	2 cut(s)	10, 916
BseYI	CCCAGC	2 cut(s)	76, 305
BshFI	GGCC	7 cut(s)	81, 209, 242, 258, 562, 668, 713
BsiHKAI	GWGCWC	1 cut(s)	821
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	69, 105, 187, 881
BslFI	GGGAC	1 cut(s)	1126
BslI	CCNNNNNNNGG	4 cut(s)	189, 217, 801, 1066
BsmAI	GTCTC	4 cut(s)	666, 767, 842, 1150
BsmFI	GGGAC	1 cut(s)	1126
BsnI	GGCC	7 cut(s)	81, 209, 242, 258, 562, 668, 713
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	3 cut(s)	235, 376, 502
BspACI	CCGC	3 cut(s)	184, 255, 275
BspANI	GGCC	7 cut(s)	81, 209, 242, 258, 562, 668, 713
BspCNI	CTCAG	3 cut(s)	313, 655, 927
BspLI	GGNNCC	2 cut(s)	67, 474
BspMAI	CTGCAG	1 cut(s)	555
BspQI	GCTCTTC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	260, 829, 1011
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	235, 376, 502
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	3 cut(s)	27, 161, 979
Bst6I	CTCTTC	3 cut(s)	137, 765, 1074
BstC8I	GCNNGC	4 cut(s)	74, 297, 564, 573
BstDEI	CTNAG	3 cut(s)	300, 663, 935
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	6 cut(s)	113, 541, 648, 919, 1104, 1114
BstKTI	GATC	3 cut(s)	238, 379, 505
BstMAI	GTCTC	4 cut(s)	666, 767, 842, 1150
BstMBI	GATC	3 cut(s)	235, 376, 502
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 559, 568, 572, 623, 719, 816, 1187
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	1 cut(s)	551
BstV2I	GAAGAC	3 cut(s)	40, 107, 1152
BsuRI	GGCC	7 cut(s)	81, 209, 242, 258, 562, 668, 713
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	6 cut(s)	113, 541, 648, 919, 1104, 1114
BtsI	GCAGTG	1 cut(s)	1024
BtsIMutI	CAGTG	5 cut(s)	157, 458, 984, 1004, 1024
Cac8I	GCNNGC	4 cut(s)	74, 297, 564, 573
Cfr13I	GGNCC	4 cut(s)	79, 208, 257, 371
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	2 cut(s)	325, 1094
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	3 cut(s)	300, 663, 935
DpnI	GATC	3 cut(s)	237, 378, 504
DpnII	GATC	3 cut(s)	235, 376, 502
DriI	GACNNNNNGTC	1 cut(s)	1000
Eam1104I	CTCTTC	3 cut(s)	137, 765, 1074
Eam1105I	GACNNNNNGTC	1 cut(s)	1000
EarI	CTCTTC	3 cut(s)	137, 765, 1074
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	842
Eco47I	GGWCC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	328, 1097
FaqI	GGGAC	1 cut(s)	1126
FatI	CATG	2 cut(s)	324, 1093
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	6 cut(s)	120, 548, 655, 926, 1111, 1121
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	824
GluI	GCNGC	1 cut(s)	256
GsaI	CCCAGC	2 cut(s)	80, 309
HaeIII	GGCC	7 cut(s)	81, 209, 242, 258, 562, 668, 713
HapII	CCGG	4 cut(s)	69, 105, 187, 881
Hin1II	CATG	2 cut(s)	328, 1097
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	3 cut(s)	403, 736, 1188
HinfI	GANTC	6 cut(s)	197, 394, 451, 556, 659, 1143
HpaII	CCGG	4 cut(s)	69, 105, 187, 881
HphI	GGTGA	2 cut(s)	826, 1144
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	202, 399, 664
Hpy188III	TCNNGA	3 cut(s)	97, 369, 1149
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	103, 626, 724
HpyCH4III	ACNGT	3 cut(s)	27, 161, 979
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	6 cut(s)	553, 571, 626, 843, 992, 1181
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 559, 568, 572, 623, 719, 816, 1187
HpyF3I	CTNAG	3 cut(s)	300, 663, 935
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	328, 1097
Kzo9I	GATC	3 cut(s)	235, 376, 502
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	5 cut(s)	14, 71, 478, 509, 1014
LweI	GCATC	2 cut(s)	156, 297
MaeI	CTAG	1 cut(s)	824
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	320, 752, 1002
MalI	GATC	3 cut(s)	237, 378, 504
MboI	GATC	3 cut(s)	235, 376, 502
MboII	GAAGA	7 cut(s)	40, 112, 124, 589, 782, 1091, 1152
MfeI	CAATTG	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	821
MluCI	AATT	3 cut(s)	434, 445, 985
MlyI	GAGTC	3 cut(s)	206, 403, 1152
Mph1103I	ATGCAT	1 cut(s)	628
MspI	CCGG	4 cut(s)	69, 105, 187, 881
MspR9I	CCNGG	1 cut(s)	881
MunI	CAATTG	1 cut(s)	434
MwoI	GCNNNNNNNGC	8 cut(s)	78, 559, 568, 572, 623, 719, 816, 1187
NciI	CCSGG	1 cut(s)	881
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	235, 376, 502
NlaIII	CATG	2 cut(s)	328, 1097
NlaIV	GGNNCC	2 cut(s)	67, 474
NmuCI	GTSAC	1 cut(s)	1002
NsiI	ATGCAT	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	451, 556, 659
PflMI	CCANNNNNTGG	1 cut(s)	1066
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	3 cut(s)	205, 402, 1151
PpsI	GAGTC	3 cut(s)	205, 402, 1151
PspFI	CCCAGC	2 cut(s)	76, 305
PspN4I	GGNNCC	2 cut(s)	67, 474
PspPI	GGNCC	4 cut(s)	79, 208, 257, 371
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	555
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
SapI	GCTCTTC	1 cut(s)	137
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	235, 376, 502
Sau96I	GGNCC	4 cut(s)	79, 208, 257, 371
SchI	GAGTC	3 cut(s)	206, 403, 1152
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	2 cut(s)	156, 297
SfcI	CTRYAG	1 cut(s)	551
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	434, 445, 985
SsiI	CCGC	3 cut(s)	184, 255, 275
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	27, 161, 979
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	7 cut(s)	195, 268, 338, 379, 449, 888, 1163
TasI	AATT	3 cut(s)	434, 445, 985
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	451, 556, 659
TscAI	CASTG	5 cut(s)	164, 465, 984, 1011, 1024
TseFI	GTSAC	1 cut(s)	1002
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	4 cut(s)	40, 322, 706, 890
TspRI	CASTG	5 cut(s)	164, 465, 984, 1011, 1024
Van91I	CCANNNNNTGG	1 cut(s)	1066
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.