pycom02g08930

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009907
Physical Location & Seq
Forward (+)
6163191 .. 6163751
561 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08930.1

Sequence Viewer

Length: 561 bp
ATGATCCTCCCCCTCGAATCCGAAGCCAAAAACAAAGAAAACTTCGGGAAAGTCCTGGCCTTGTGCATGGCATTCATAGCTCTGATCTACGGATCATTTGGAATTCTGGGTTACTTCGCATTCGGGGAAGAAACCAAAGACATAATCACAACCAATTTCGGGCAGGGCGTTGTGAGCACACTGGTGCAGCTGGGTCTGTGCATAAACCTGTTCTTCACTCTCCCGTTGATGATGAACCCGGTTTTCGAGGTCGTGGAGCGGCGGTTCTGCGGCTCCACCTACTCCCTGTGGCTGCGGTGGCTGACGGTTTTCGGGGTGAGCCTGGTGGCGCTGCTGGTGCCGAATTTCGCAGATTTCTTGTCGCTGGTGGGGAGCAGTGTGTGTGTGGCGCTGGGGTTTGTGCTGCCTGCTCTGTTTCATCTGATGGTGTTTAGGGATGAGCTGAGTTGGTTTGGGAGTGTTTTGGATGGGTGCATTGTGGTGTTGGGTGTGGTGATTGGGGTGTCTGGGACTTGGTCCTCAGTGGCGGAGATTATTGCACCCAAAGCTCGATTTGGTTGA

Protein Analysis

187

Amino Acids

20.27

Weight (kDa)

5.07

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 174 2.8e-33 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 259
AciI CCGC 5 cut(s) 259, 262, 270, 295, 527
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 2 cut(s) 102, 343
AfiI CCNNNNNNNGG 1 cut(s) 159
AjnI CCWGG 2 cut(s) 54, 321
AleI CACNNNNGTG 1 cut(s) 182
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 80, 190, 442, 548
AluI AGCT 4 cut(s) 80, 190, 442, 548
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 187, 292, 331, 403
ApoI RAATTY 2 cut(s) 102, 343
AspLEI GCGC 2 cut(s) 331, 391
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 328, 505
AvaII GGWCC 1 cut(s) 516
BanI GGYRCC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 199, 279, 318, 390
BccI CCATC 2 cut(s) 418, 461
BciT130I CCWGG 2 cut(s) 56, 323
BcnI CCSGG 1 cut(s) 239
BfoI RGCGCY 2 cut(s) 332, 392
BisI GCNGC 6 cut(s) 188, 260, 271, 293, 332, 404
BlsI GCNGC 6 cut(s) 189, 261, 272, 294, 333, 405
Bme1390I CCNGG 3 cut(s) 56, 239, 323
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 274, 339
BmrFI CCNGG 3 cut(s) 56, 239, 323
BpuMI CCSGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 56, 323
BseGI GGATG 2 cut(s) 442, 472
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 434, 534
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 4 cut(s) 199, 279, 318, 390
BseYI CCCAGC 2 cut(s) 190, 391
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 2 cut(s) 71, 119
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 3, 84, 92
BspACI CCGC 5 cut(s) 259, 262, 270, 295, 527
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 435, 533
BspLI GGNNCC 2 cut(s) 274, 339
BspPI GGATC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 186
BssMI GATC 3 cut(s) 3, 84, 92
Bst2UI CCWGG 2 cut(s) 56, 323
Bst4CI ACNGT 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 443, 520
BstF5I GGATG 2 cut(s) 442, 472
BstH2I RGCGCY 2 cut(s) 332, 392
BstHHI GCGC 2 cut(s) 331, 391
BstKTI GATC 3 cut(s) 6, 87, 95
BstMBI GATC 3 cut(s) 3, 84, 92
BstMWI GCNNNNNNNGC 5 cut(s) 77, 174, 298, 337, 545
BstNI CCWGG 2 cut(s) 56, 323
BstSCI CCNGG 3 cut(s) 54, 237, 321
BstV1I GCAGC 4 cut(s) 199, 279, 318, 390
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 442, 472
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 3 cut(s) 179, 382, 528
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 2 cut(s) 331, 391
Cfr13I GGNCC 1 cut(s) 516
CviAII CATG 1 cut(s) 67
DdeI CTNAG 2 cut(s) 443, 520
DpnI GATC 3 cut(s) 5, 86, 94
DpnII GATC 3 cut(s) 3, 84, 92
EciI GGCGGA 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 54, 321
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 68, 77, 143, 203
FaqI GGGAC 1 cut(s) 523
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 188, 260, 271, 293, 332, 404
FokI GGATG 2 cut(s) 449, 479
Fsp4HI GCNGC 6 cut(s) 188, 260, 271, 293, 332, 404
GlaI GCGC 2 cut(s) 330, 390
GluI GCNGC 6 cut(s) 188, 260, 271, 293, 332, 404
GsaI CCCAGC 2 cut(s) 194, 395
HaeII RGCGCY 2 cut(s) 332, 392
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 239
HhaI GCGC 2 cut(s) 331, 391
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 2 cut(s) 329, 389
HinP1I GCGC 2 cut(s) 329, 389
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 328, 505
Hpy188I TCNGA 3 cut(s) 22, 84, 423
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 5 cut(s) 66, 187, 201, 474, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 174, 298, 337, 545
HpyF3I CTNAG 2 cut(s) 443, 520
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 2 cut(s) 329, 389
Kzo9I GATC 3 cut(s) 3, 84, 92
LmnI GCTCC 3 cut(s) 256, 278, 372
Lsp1109I GCAGC 4 cut(s) 199, 279, 318, 390
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 5, 86, 94
MbiI CCGCTC 1 cut(s) 259
MboI GATC 3 cut(s) 3, 84, 92
MboII GAAGA 2 cut(s) 140, 205
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 102, 154, 343
MnlI CCTC 4 cut(s) 17, 23, 241, 529
MslI CAYNNNNRTG 2 cut(s) 182, 479
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 56, 239, 323
Mva1269I GAATGC 2 cut(s) 71, 119
MvaI CCWGG 2 cut(s) 56, 323
MwoI GCNNNNNNNGC 5 cut(s) 77, 174, 298, 337, 545
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 3, 84, 92
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 274, 339
OliI CACNNNNGTG 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 2 cut(s) 71, 119
PfeI GAWTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 514
PkrI GCNGC 6 cut(s) 189, 261, 272, 294, 333, 405
Psp6I CCWGG 2 cut(s) 54, 321
PspFI CCCAGC 2 cut(s) 190, 391
PspGI CCWGG 2 cut(s) 54, 321
PspN4I GGNNCC 2 cut(s) 274, 339
PspPI GGNCC 1 cut(s) 516
PsyI GACNNNGTC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 182, 479
SatI GCNGC 6 cut(s) 188, 260, 271, 293, 332, 404
Sau3AI GATC 3 cut(s) 3, 84, 92
Sau96I GGNCC 1 cut(s) 516
ScrFI CCNGG 3 cut(s) 56, 239, 323
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 82, 192, 210, 252, 281, 444, 550
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 182, 479
Sse9I AATT 3 cut(s) 102, 154, 343
SsiI CCGC 5 cut(s) 259, 262, 270, 295, 527
StyD4I CCNGG 3 cut(s) 54, 237, 321
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 15, 246, 550
TasI AATT 3 cut(s) 102, 154, 343
TauI GCSGC 2 cut(s) 262, 273
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 3 cut(s) 186, 382, 528
TseI GCWGC 4 cut(s) 187, 292, 331, 403
TspDTI ATGAA 3 cut(s) 64, 248, 407
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 3 cut(s) 186, 382, 528
Tth111I GACNNNGTC 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 2 cut(s) 102, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.