Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006853.1

Orthogroup ID

OG0009907

Physical Location & Seq

Genomic Coordinates Reverse (-)

10505 .. 11308

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006853.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgagtccgaaaagcttgtatgtttgggggtgttttccatttcaattggggttgaattcgattcccacactgacccatttggctcctttgagtatttttgctgatgtggttgatcttggagctatgggagttgttatggttgaggatgtaatgatttttctgcagaatcggcctgctttgcaagcatttgggggcttttcggttttcttctatggtcttggtgtggctgtttatgcatttgaagggattgggatgatattgccattggaatctgaggccagagacaaggacaagtttggcagagtgttggctttggttatggccttcattgctttgttgtatggaagctttggggttctgggttactttgcttttggggaagagactaaagacataatcactaccaactttgggcaaggcttggtgagcactctagtccagttgggtctctgcataaacttgttctttactctaccattgatgatgaacccggttttcgaggttgtggagaggaggttttgggatggggggtactgcttgtggctgaggtgggttatggtgtttggggtctgcttggtggctcttacagtgcctaattttgcagactttttgtcactggtggggagcagtgtttgtgtggctttagggtttgtgtttcctgctttgttccatttgatggtgttcaaggaagagttggggtggcatgggatggttttggatgggactattgtggttattggggtgattattggagtctctggaacttggtcttcgatagcagagattgttgcacccaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

267

Amino Acids

29.13

Weight (kDa)

4.76

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65990
fragaria_vesca	FvH4_1g10240
malus_domestica	MD02G1114400.v1.1 MD15G1230000.v1.1
prunus_persica	Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1
pyrus_communis	pycom02g08930 pycom15g20520
rosa_chinensis	RchiOBHm_Chr2g0097061
rosa_laevigata	RLG00000016699
rosa_multiflora	Rmu_co8492857.1_g000002 Rmu_sc0006853.1_g000002 Rmu_sc0017953.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145010
rosa_rugosa	Rorug02G0063300
rosa_samantha	Rh2AG110900 Rh2BG112800 Rh2CG115000 Rh2DG114200
rosa_wichuraiana	Rw2G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	676
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	2 cut(s)	411, 676
AgsI	TTSAA	4 cut(s)	44, 55, 242, 685
AhdI	GACNNNNNGTC	1 cut(s)	610
AluBI	AGCT	4 cut(s)	15, 122, 348, 800
AluI	AGCT	4 cut(s)	15, 122, 348, 800
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	4 cut(s)	276, 377, 452, 760
AoxI	GGCC	3 cut(s)	170, 276, 321
ApoI	RAATTY	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	436, 754
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	431
BbvCI	CCTCAGC	1 cut(s)	545
BccI	CCATC	4 cut(s)	518, 670, 703, 713
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	4 cut(s)	276, 377, 452, 760
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	491
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 676
Bse1I	ACTGG	2 cut(s)	439, 621
Bse3DI	GCAATG	1 cut(s)	327
BseGI	GGATG	5 cut(s)	151, 258, 529, 714, 724
BseLI	CCNNNNNNNGG	2 cut(s)	411, 676
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	264, 536
BseNI	ACTGG	2 cut(s)	439, 621
BseRI	GAGGAG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	172, 278, 323
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	2 cut(s)	411, 676
BsmAI	GTCTC	4 cut(s)	276, 377, 452, 760
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	172, 278, 323
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	3 cut(s)	172, 278, 323
BspCNI	CTCAG	2 cut(s)	265, 537
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	439, 621
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	2 cut(s)	375, 684
BstC8I	GCNNGC	2 cut(s)	174, 183
BstDEI	CTNAG	2 cut(s)	273, 545
BstF5I	GGATG	5 cut(s)	151, 258, 529, 714, 724
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	4 cut(s)	276, 377, 452, 760
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 178, 182, 233, 329, 426, 797
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	172, 278, 323
BtsCI	GGATG	5 cut(s)	151, 258, 529, 714, 724
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	4 cut(s)	68, 594, 614, 634
Cac8I	GCNNGC	2 cut(s)	174, 183
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	2 cut(s)	273, 545
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	375, 684
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	2 cut(s)	375, 684
Eco31I	GGTCTC	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	1 cut(s)	707
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	1 cut(s)	703
FokI	GGATG	5 cut(s)	158, 265, 536, 721, 731
FspBI	CTAG	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	172, 278, 323
HapII	CCGG	1 cut(s)	491
Hin1II	CATG	1 cut(s)	707
HindIII	AAGCTT	3 cut(s)	13, 346, 798
HinfI	GANTC	5 cut(s)	4, 61, 166, 269, 753
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	2 cut(s)	436, 754
Hpy188I	TCNGA	2 cut(s)	9, 274
Hpy188III	TCNNGA	1 cut(s)	759
HpyAV	CCTTC	2 cut(s)	236, 334
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	6 cut(s)	163, 181, 236, 453, 602, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 178, 182, 233, 329, 426, 797
HpyF3I	CTNAG	2 cut(s)	273, 545
Hsp92II	CATG	1 cut(s)	707
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	88, 119, 624
LpnPI	CCDG	8 cut(s)	186, 292, 344, 452, 504, 602, 672, 744
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	362, 612
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	199, 392, 701, 762
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	3 cut(s)	44, 55, 595
MlyI	GAGTC	2 cut(s)	13, 762
MnlI	CCTC	6 cut(s)	136, 268, 493, 504, 507, 540
Mph1103I	ATGCAT	1 cut(s)	238
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	1 cut(s)	44
MwoI	GCNNNNNNNGC	7 cut(s)	169, 178, 182, 233, 329, 426, 797
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	61, 166, 269
PflMI	CCANNNNNTGG	1 cut(s)	676
PleI	GAGTC	2 cut(s)	12, 761
PpsI	GAGTC	2 cut(s)	12, 761
PspN4I	GGNNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	165
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	2 cut(s)	13, 762
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	7 cut(s)	17, 124, 350, 504, 518, 551, 802
SfcI	CTRYAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	44, 55, 595
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	59, 498, 773
TasI	AATT	3 cut(s)	44, 55, 595
TfiI	GAWTC	3 cut(s)	61, 166, 269
TscAI	CASTG	4 cut(s)	75, 594, 621, 634
TseFI	GTSAC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	2 cut(s)	316, 500
TspRI	CASTG	4 cut(s)	75, 594, 621, 634
Van91I	CCANNNNNTGG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.