Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009907

Physical Location & Seq

Genomic Coordinates Forward (+)

9902910 .. 9904966

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTGGTGTTCGACAAGGACGCAACCTCATCCTCCCAAACCCTCCCTCCTTTCCCACGCGAGGACACGCCTCTCCTCGGAAAACGCTCCCATCTCTCCTCCCAGTCCAAGACATTCGCCAACGTCTTCATCGCCATCGTCGGCTCCGGCGTGCTGGGCCTCCCCTACACCTTCAAGAAGACCGGATGGGTTTTCGGCTCTGTTATGCTCTTCTCTGTGGCTTTTCTTACCTACCACTGCATGATGCTTCTGGTCAAAACCCGCCGGAGGCTCGAGTCCGATATGGCTCTCTCCAAGGTCAACTCTTTCGGCGATCTGGCCTTTGCCGTTTGCGGCCCAGTTGGTCGATTTGCGGTTGATGTCAGCATCGTGCTGGCTCAGGCTGGGTTCTGCGTTAGTTACATGATTTTCATATCGAATAGTTTGGCATATGTGTTCAACTATTCTGGACCTGATCGAGTTCTGGGTATGAGTCCGAAAAGCTTGTATGTTTGGGGGTGTTTTCCATTTCAATTGGGGTTGAATTCGATTCCCACACTCACCCATTTGGCTCCTTTGAGTATTTTTGCTGATGTGGTTGATCTTGGAGCCATGGGAGTTGTTATGGTTGAGGATGTAATGATTTTTCTGCAGAATCGGCCCGCTTTGCAAGCATTTGGGGGCTTTTCGGTTTTCTTCTATGGTCTTGGTGTGGCTGTTTATGCATTTGAAGGGATTGGGATGATATTGCCATTGGAATCTGAGGCCAGAGACAAGGACAAGTTTGGCAGAGTGTTGGCTTTGGTTATGGCCTTCATTGCTTTGTTGTATGGAAGCTTTGGGGTTCTGGGTTACTTTGCTTTTGGGGAAGACACTAAAGACATAATCACTACCAACTTTGGGCAAGGCTTGGTGAGCACTCTAGTCCAGTTGGGTCTCTGCATAAACTTGTTCTTTACTCTACCATTGATGATGAACCCGGTTTTCGAGGTTGTGGAGAGGAGGTTTTGGGATGGGGGTTACTGCTTGTGGCTGAGGTGGGTTATGGTGTTTGGGGTCTGCTTGGTGGCTCTTACAGTGCCTAATTTTGCAGACTTTTTGTCACTCGTGGGGAGCAGTGTTTGTGTGGCTTTAGGGTTTGTGTTTCCTGCTTTGTTCCATTTGATGGTGTTCAAGGAAGAGTTGGGGTGGCATGGGATGGTTTTGGATGGGACTATTGTGGTTATTGGGGTGATTATTGGAGTCTCTGGAACTTGGTCTTCGATAGCAGAGATTGTTGCACCCAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

423

Amino Acids

46.16

Weight (kDa)

5.97

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	34 - 415	5.9e-75	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65990
fragaria_vesca	FvH4_1g10240
malus_domestica	MD02G1114400.v1.1 MD15G1230000.v1.1
prunus_persica	Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1 Prupe.7G183800_v2.0.a1
pyrus_communis	pycom02g08930 pycom15g20520
rosa_chinensis	RchiOBHm_Chr2g0097061
rosa_laevigata	RLG00000016699
rosa_multiflora	Rmu_co8492857.1_g000002 Rmu_sc0006853.1_g000002 Rmu_sc0017953.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145010
rosa_rugosa	Rorug02G0063300
rosa_samantha	Rh2AG110900 Rh2BG112800 Rh2CG115000 Rh2DG114200
rosa_wichuraiana	Rw2G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1144
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	262, 333, 353, 642
AcsI	RAATTY	1 cut(s)	523
AfiI	CCNNNNNNNGG	5 cut(s)	61, 77, 267, 879, 1144
AgsI	TTSAA	6 cut(s)	175, 439, 512, 523, 710, 1153
AhdI	GACNNNNNGTC	1 cut(s)	1078
AluBI	AGCT	3 cut(s)	483, 816, 1268
AluI	AGCT	3 cut(s)	483, 816, 1268
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	3 cut(s)	744, 920, 1228
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	6 cut(s)	157, 318, 334, 638, 744, 789
ApoI	RAATTY	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	157, 335, 449, 639
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	3 cut(s)	532, 904, 1222
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	1085
BbsI	GAAGAC	4 cut(s)	118, 185, 855, 1230
Bbv12I	GWGCWC	1 cut(s)	899
BbvCI	CCTCAGC	1 cut(s)	1013
BccI	CCATC	7 cut(s)	99, 143, 180, 986, 1138, 1171, 1181
BceAI	ACGGC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	3 cut(s)	744, 920, 1228
BfaI	CTAG	1 cut(s)	902
BfmI	CTRYAG	1 cut(s)	629
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	959
Bme18I	GGWCC	1 cut(s)	449
BmeRI	GACNNNNNGTC	1 cut(s)	1078
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	157, 335, 449, 639
BmiI	GGNNCC	3 cut(s)	145, 552, 589
BmrFI	CCNGG	1 cut(s)	959
BmrI	ACTGGG	2 cut(s)	97, 332
BmsI	GCATC	2 cut(s)	234, 375
BmuI	ACTGGG	2 cut(s)	97, 332
BpiI	GAAGAC	4 cut(s)	118, 185, 855, 1230
Bpu10I	CCTNAGC	2 cut(s)	378, 1013
BpuMI	CCSGG	1 cut(s)	959
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	3 cut(s)	76, 294, 591
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 968, 998
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 77, 267, 879, 1144
Bse1I	ACTGG	3 cut(s)	103, 338, 907
Bse3DI	GCAATG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	76, 294, 591
BseGI	GGATG	7 cut(s)	29, 191, 619, 726, 997, 1182, 1192
BseLI	CCNNNNNNNGG	5 cut(s)	61, 77, 267, 879, 1144
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	3 cut(s)	392, 732, 1004
BseNI	ACTGG	3 cut(s)	103, 338, 907
BseRI	GAGGAG	3 cut(s)	65, 88, 994
BseYI	CCCAGC	2 cut(s)	154, 383
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	6 cut(s)	159, 320, 336, 640, 746, 791
BsiHKAI	GWGCWC	1 cut(s)	899
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	4 cut(s)	147, 183, 265, 959
BslFI	GGGAC	1 cut(s)	1204
BslI	CCNNNNNNNGG	5 cut(s)	61, 77, 267, 879, 1144
BsmAI	GTCTC	3 cut(s)	744, 920, 1228
BsmFI	GGGAC	1 cut(s)	1204
BsnI	GGCC	6 cut(s)	159, 320, 336, 640, 746, 791
Bso31I	GGTCTC	1 cut(s)	920
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	3 cut(s)	313, 454, 580
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	262, 333, 353, 642
BspANI	GGCC	6 cut(s)	159, 320, 336, 640, 746, 791
BspCNI	CTCAG	3 cut(s)	391, 733, 1005
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	145, 552, 589
BspMAI	CTGCAG	1 cut(s)	633
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	103, 338, 907
BssECI	CCNNGG	3 cut(s)	76, 294, 591
BssMI	GATC	3 cut(s)	313, 454, 580
BssSI	CACGAG	1 cut(s)	1085
BssT1I	CCWWGG	2 cut(s)	294, 591
Bst2BI	CACGAG	1 cut(s)	1085
Bst4CI	ACNGT	1 cut(s)	1057
Bst6I	CTCTTC	2 cut(s)	215, 1152
BstC8I	GCNNGC	4 cut(s)	152, 375, 642, 651
BstDEI	CTNAG	3 cut(s)	378, 741, 1013
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	7 cut(s)	29, 191, 619, 726, 997, 1182, 1192
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	316, 457, 583
BstMAI	GTCTC	3 cut(s)	744, 920, 1228
BstMBI	GATC	3 cut(s)	313, 454, 580
BstMWI	GCNNNNNNNGC	8 cut(s)	156, 637, 646, 650, 701, 797, 894, 1265
BstSCI	CCNGG	1 cut(s)	957
BstSFI	CTRYAG	1 cut(s)	629
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	4 cut(s)	118, 185, 855, 1230
BsuRI	GGCC	6 cut(s)	159, 320, 336, 640, 746, 791
BtgI	CCRYGG	1 cut(s)	591
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	7 cut(s)	29, 191, 619, 726, 997, 1182, 1192
BtsI	GCAGTG	2 cut(s)	235, 1102
BtsIMutI	CAGTG	3 cut(s)	235, 1062, 1102
Cac8I	GCNNGC	4 cut(s)	152, 375, 642, 651
Cfr13I	GGNCC	4 cut(s)	157, 335, 449, 639
CseI	GACGC	1 cut(s)	29
CviAII	CATG	4 cut(s)	241, 403, 592, 1172
DdeI	CTNAG	3 cut(s)	378, 741, 1013
DpnI	GATC	3 cut(s)	315, 456, 582
DpnII	GATC	3 cut(s)	313, 454, 580
DriI	GACNNNNNGTC	1 cut(s)	1078
Eam1104I	CTCTTC	2 cut(s)	215, 1152
Eam1105I	GACNNNNNGTC	1 cut(s)	1078
EarI	CTCTTC	2 cut(s)	215, 1152
Eco130I	CCWWGG	2 cut(s)	294, 591
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	294, 591
EcoT22I	ATGCAT	1 cut(s)	706
ErhI	CCWWGG	2 cut(s)	294, 591
FaeI	CATG	4 cut(s)	244, 406, 595, 1175
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	4 cut(s)	240, 402, 591, 1171
FauI	CCCGC	2 cut(s)	269, 649
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	7 cut(s)	16, 198, 626, 733, 1004, 1189, 1199
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	902
GluI	GCNGC	1 cut(s)	334
GsaI	CCCAGC	2 cut(s)	158, 387
HaeIII	GGCC	6 cut(s)	159, 320, 336, 640, 746, 791
HapII	CCGG	4 cut(s)	147, 183, 265, 959
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	244, 406, 595, 1175
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	481, 814
HinfI	GANTC	6 cut(s)	275, 472, 529, 634, 737, 1221
HpaII	CCGG	4 cut(s)	147, 183, 265, 959
HphI	GGTGA	3 cut(s)	532, 904, 1222
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	80, 280, 477, 742
Hpy188III	TCNNGA	3 cut(s)	175, 447, 1227
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	181, 704, 802
HpyCH4III	ACNGT	1 cut(s)	1057
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	240, 631, 649, 704, 921, 1070, 1259
HpyF10VI	GCNNNNNNNGC	8 cut(s)	156, 637, 646, 650, 701, 797, 894, 1265
HpyF3I	CTNAG	3 cut(s)	378, 741, 1013
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	244, 406, 595, 1175
Kzo9I	GATC	3 cut(s)	313, 454, 580
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	5 cut(s)	92, 149, 556, 587, 1092
LweI	GCATC	2 cut(s)	234, 375
MaeI	CTAG	1 cut(s)	902
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	4 cut(s)	398, 830, 998, 1080
MalI	GATC	3 cut(s)	315, 456, 582
MboI	GATC	3 cut(s)	313, 454, 580
MboII	GAAGA	7 cut(s)	118, 190, 202, 667, 860, 1169, 1230
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	3 cut(s)	512, 523, 1063
MlyI	GAGTC	3 cut(s)	284, 481, 1230
Mph1103I	ATGCAT	1 cut(s)	706
MspI	CCGG	4 cut(s)	147, 183, 265, 959
MspR9I	CCNGG	1 cut(s)	959
MunI	CAATTG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	8 cut(s)	156, 637, 646, 650, 701, 797, 894, 1265
NciI	CCSGG	1 cut(s)	959
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	313, 454, 580
NlaIII	CATG	4 cut(s)	244, 406, 595, 1175
NlaIV	GGNNCC	3 cut(s)	145, 552, 589
NmuCI	GTSAC	1 cut(s)	1080
NsiI	ATGCAT	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	529, 634, 737
PflMI	CCANNNNNTGG	1 cut(s)	1144
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	3 cut(s)	283, 480, 1229
PpsI	GAGTC	3 cut(s)	283, 480, 1229
PspFI	CCCAGC	2 cut(s)	154, 383
PspN4I	GGNNCC	3 cut(s)	145, 552, 589
PspPI	GGNCC	4 cut(s)	157, 335, 449, 639
PspXI	VCTCGAGB	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	313, 454, 580
Sau96I	GGNCC	4 cut(s)	157, 335, 449, 639
SchI	GAGTC	3 cut(s)	284, 481, 1230
ScrFI	CCNGG	1 cut(s)	959
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	2 cut(s)	234, 375
SfcI	CTRYAG	1 cut(s)	629
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	512, 523, 1063
SsiI	CCGC	4 cut(s)	262, 333, 353, 642
SspMI	CTAG	1 cut(s)	902
StyD4I	CCNGG	1 cut(s)	957
StyI	CCWWGG	2 cut(s)	294, 591
TaaI	ACNGT	1 cut(s)	1057
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	8 cut(s)	12, 273, 346, 416, 457, 527, 966, 1241
TasI	AATT	3 cut(s)	512, 523, 1063
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	529, 634, 737
TscAI	CASTG	3 cut(s)	242, 1062, 1102
TseFI	GTSAC	1 cut(s)	1080
Tsp45I	GTSAC	1 cut(s)	1080
TspDTI	ATGAA	4 cut(s)	118, 400, 784, 968
TspRI	CASTG	3 cut(s)	242, 1062, 1102
Van91I	CCANNNNNTGG	1 cut(s)	1144
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	902
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.