FvH4_1g10440

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016692
Physical Location & Seq
Forward (+)
5706790 .. 5708572
1783 bp
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UTR
Exon/CDS
Intron
FvH4_1g10440.t1

Sequence Viewer

Length: 807 bp
ATGTACGGATCGAGAGGGGCAATGTTGGGAGGCGGGGGGTTATCGGACGTGTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTTGCAGTTGGCAGCAGCGTTTCAAGGGGATTTCAACCTTTTGGTGGCTTTGGTGCTGGCTACCAGCTTCCTGCTTTTCCTGTGGTACGCCTTAGGGGGCTTCCCTTCAACTGTGCCGACATTGACATCTTCAAGTTCTTTGCTGGACTAGATATTGTGGATGTATTGCTGGTCAACAAGGGTGGACGCTTCTCAGGAGAGGCCTTTGTTGTCTTTGCTGGACCTGTGCAGGTTGAGTTGGCACTCCAAAGAGACCGGCAGAACATGGGGCGTAGGTATGTCGAGGTTTTCACATGCAAGAGGCAGGATTACTACAATGCTGTTGCAGCAGAGGTCAGCTATGAAGGAGGGAGTTATGACAATGAATATCAAGGAAGTCCTCCTCCAGCTAAATCATCAAAGAGGTTCAGTGATAAGGAGAAAATGGAATACACTGAGATATTGAAGCTGCGCGGTCTACCTTTCTCTGTAAAGAGATCTCAAATTGTTGATTTTTTTAAAGGCTTCAAGGTCATTGAAGATAGAGTACATATTGCTTGCCGCCCAGATGGAAAAGCTACGGGAGAGGCATACGTGGAGTTTGTCTCTGCAGAAGAGGCTAAAAGGGCAATGTCCAAGGACAAGATGATGATTGGGTCCAGGTATGTGGAGCTGTTTCCATCAACGCCAGATGAAGCTAGGCGGGCAGAAAACAGATCAAGGCAGTGA

Protein Analysis

269

Amino Acids

29.92

Weight (kDa)

9.11

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 183 - 249 2.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 556
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 33, 552, 640, 781
AclWI GGATC 1 cut(s) 16
AfaI GTAC 4 cut(s) 5, 53, 186, 627
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 7 cut(s) 123, 134, 208, 232, 544, 607, 617
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 7 cut(s) 166, 438, 488, 547, 656, 751, 776
AluI AGCT 7 cut(s) 166, 438, 488, 547, 656, 751, 776
Alw26I GTCTC 3 cut(s) 64, 345, 688
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 4 cut(s) 111, 114, 425, 547
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 2 cut(s) 320, 735
AvaII GGWCC 2 cut(s) 320, 735
AxyI CCTNAGG 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BbvI GCAGC 4 cut(s) 123, 126, 437, 534
BccI CCATC 3 cut(s) 76, 641, 766
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 3 cut(s) 64, 345, 688
BfaI CTAG 2 cut(s) 248, 777
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 575
BisI GCNGC 5 cut(s) 112, 115, 426, 548, 640
BlsI GCNGC 5 cut(s) 113, 116, 427, 549, 641
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 2 cut(s) 320, 735
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 320, 735
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 1 cut(s) 739
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 668, 700
BpmI CTGGAG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 673
BsaI GGTCTC 2 cut(s) 64, 345
BsaJI CCNNGG 1 cut(s) 714
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 354
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 27, 714
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 2 cut(s) 27, 714
BseMII CTCAG 2 cut(s) 306, 525
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 4 cut(s) 123, 126, 437, 534
BsgI GTGCAG 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 64, 345, 688
BsnI GGCC 1 cut(s) 302
Bso31I GGTCTC 2 cut(s) 64, 345
Bsp143I GATC 3 cut(s) 8, 575, 794
BspACI CCGC 4 cut(s) 33, 552, 640, 781
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 2 cut(s) 305, 526
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 1 cut(s) 736
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 16
BspTNI GGTCTC 2 cut(s) 64, 345
BsrDI GCAATG 2 cut(s) 27, 714
BsrFI RCCGGY 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 3 cut(s) 8, 575, 794
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 739
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 157, 637, 783
BstDEI CTNAG 3 cut(s) 191, 292, 534
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 3 cut(s) 11, 578, 797
BstMAI GTCTC 3 cut(s) 64, 345, 688
BstMBI GATC 3 cut(s) 8, 575, 794
BstMWI GCNNNNNNNGC 4 cut(s) 425, 695, 704, 782
BstNI CCWGG 1 cut(s) 739
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 737
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 123, 126, 437, 534
BstX2I RGATCY 1 cut(s) 575
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 1 cut(s) 575
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 302
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 514, 531
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 157, 637, 783
CfoI GCGC 1 cut(s) 552
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 320, 735
CseI GACGC 1 cut(s) 294
Csp6I GTAC 4 cut(s) 4, 52, 185, 626
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 2 cut(s) 364, 393
CviQI GTAC 4 cut(s) 4, 52, 185, 626
DdeI CTNAG 3 cut(s) 191, 292, 534
DpnI GATC 3 cut(s) 10, 577, 796
DpnII GATC 3 cut(s) 8, 575, 794
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 714
Eco147I AGGCCT 1 cut(s) 302
Eco31I GGTCTC 2 cut(s) 64, 345
Eco47I GGWCC 2 cut(s) 320, 735
Eco81I CCTNAGG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 2 cut(s) 367, 396
FaiI YATR 8 cut(s) 365, 378, 394, 441, 456, 630, 670, 744
FatI CATG 2 cut(s) 363, 392
FauI CCCGC 2 cut(s) 26, 774
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 5 cut(s) 112, 115, 426, 548, 640
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 112, 115, 426, 548, 640
FspBI CTAG 2 cut(s) 248, 777
GlaI GCGC 1 cut(s) 551
GluI GCNGC 5 cut(s) 112, 115, 426, 548, 640
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 355
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 552
Hin1II CATG 2 cut(s) 367, 396
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 4 cut(s) 52, 274, 284, 557
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 12, 294
Hpy8I GTNNAC 4 cut(s) 52, 274, 284, 557
HpyAV CCTTC 2 cut(s) 214, 437
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 48, 672
HpyCH4V TGCA 5 cut(s) 104, 328, 396, 425, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 425, 695, 704, 782
HpyF3I CTNAG 3 cut(s) 191, 292, 534
HpySE526I ACGT 2 cut(s) 48, 672
Hsp92II CATG 2 cut(s) 367, 396
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 3 cut(s) 8, 575, 794
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 4 cut(s) 123, 126, 437, 534
MaeI CTAG 2 cut(s) 248, 777
MaeII ACGT 2 cut(s) 48, 672
MalI GATC 3 cut(s) 10, 577, 796
MboI GATC 3 cut(s) 8, 575, 794
MboII GAAGA 3 cut(s) 220, 629, 704
MflI RGATCY 1 cut(s) 575
MluCI AATT 1 cut(s) 582
MseI TTAA 1 cut(s) 597
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 739
MvaI CCWGG 1 cut(s) 739
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 4 cut(s) 425, 695, 704, 782
NdeII GATC 3 cut(s) 8, 575, 794
NlaIII CATG 2 cut(s) 367, 396
NlaIV GGNNCC 1 cut(s) 736
NspI RCATGY 1 cut(s) 396
PceI AGGCCT 1 cut(s) 302
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 5 cut(s) 113, 116, 427, 549, 641
Ppu21I YACGTR 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 2 cut(s) 320, 735
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 575
RsaI GTAC 4 cut(s) 5, 53, 186, 627
RsaNI GTAC 4 cut(s) 4, 52, 185, 626
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 5 cut(s) 112, 115, 426, 548, 640
Sau3AI GATC 3 cut(s) 8, 575, 794
Sau96I GGNCC 2 cut(s) 320, 735
ScrFI CCNGG 1 cut(s) 739
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 2 cut(s) 320, 735
Sse9I AATT 1 cut(s) 582
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 4 cut(s) 33, 552, 640, 781
SspMI CTAG 2 cut(s) 248, 777
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 737
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 51, 675
TaqI TCGA 2 cut(s) 11, 381
TasI AATT 1 cut(s) 582
TatI WGTACW 1 cut(s) 625
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 2 cut(s) 514, 538
TseI GCWGC 4 cut(s) 111, 114, 425, 547
TspDTI ATGAA 3 cut(s) 456, 477, 786
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 514, 538
VpaK11BI GGWCC 2 cut(s) 320, 735
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 556
XspI CTAG 2 cut(s) 248, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.