RLG00000016715

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016692
Physical Location & Seq
Forward (+)
9359450 .. 9360847
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016715

Sequence Viewer

Length: 801 bp
ATGTACGGATCAAGAGGGGCAATGTTGGGAGGCGGGGGGTTATCGGACGTCTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTTGGCAGCAGTGCAAGGGGATTTCAACCTTTCGGCGGCTATGGTGGCGGCTTCCAGCTTCCTGCTTTTCCCGTGGTCCGTCTTAGGGGCCTTCCTTTCAACTGCACGGACATTGACATCTTCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGCTGGTCAACAAGGGCGGACGCTTCTCAGGAGAGGCCTTTGTTGTCTTTGCTGGGCCTTTGCAGGTTGAGTTAGCTCTTCAAAGAGATCGGCAGAACATGGGGCGTAGGTATGTTGAAGTTTTCACATGCAAGAGGCAGGACTATTACAATGCTGTTGCAGCAGAGGTCAGCTATGAAGGGATTTATGACAATGATTTTCAAGGAAGTCCTCCTCCAGCTAAATCATCAAAGCGGTTCAATGATAAGGAAAAAATGGAATACACCGAGATATTGAAGTTGCGTGGTCTACCATTCTCTGTAAAAAGATCTCAAATTATTGATTTTTTTGGAGATTTCAAGGTCGTTGAAGATAGAGTACATATTGCTTGCCGCCCAGATGGAAAAGCTACCGGAGAGGCATACGTGGAGTTTGTTTCTGCAGAAGAGGCTAAAAAGGCAATGTCCAAGGACAAGATGATGATTGGGTCCAGGTATGTGGAGCTGTTTCCATCAACACCAGATGAAGCTAGACGGGCAGAATCCAGATCAAGGCAGTGA

Protein Analysis

267

Amino Acids

29.73

Weight (kDa)

8.83

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 181 - 247 8.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 51, 550
AciI CCGC 6 cut(s) 33, 141, 153, 279, 496, 634
AclWI GGATC 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 5, 621
AfiI CCNNNNNNNGG 3 cut(s) 140, 190, 792
AjnI CCWGG 1 cut(s) 731
AluBI AGCT 7 cut(s) 163, 338, 435, 482, 650, 745, 770
AluI AGCT 7 cut(s) 163, 338, 435, 482, 650, 745, 770
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 16
AoxI GGCC 3 cut(s) 193, 297, 317
ApeKI GCWGC 2 cut(s) 111, 422
AspS9I GGNCC 4 cut(s) 181, 193, 317, 729
AvaII GGWCC 2 cut(s) 181, 729
BarI GAAGNNNNNNTAC 2 cut(s) 603, 635
BbvI GCAGC 2 cut(s) 123, 434
BccI CCATC 3 cut(s) 76, 635, 760
BciT130I CCWGG 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 569
BisI GCNGC 5 cut(s) 112, 142, 154, 423, 634
BlsI GCNGC 5 cut(s) 113, 143, 155, 424, 635
Bme1390I CCNGG 1 cut(s) 733
Bme18I GGWCC 2 cut(s) 181, 729
BmgT120I GGNCC 4 cut(s) 181, 193, 317, 729
BmiI GGNNCC 2 cut(s) 194, 730
BmrFI CCNGG 1 cut(s) 733
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 177, 708
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 190, 792
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 27, 708
BseBI CCWGG 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 177, 708
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 140, 190, 792
BseMI GCAATG 2 cut(s) 27, 708
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 2 cut(s) 123, 434
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 3 cut(s) 195, 299, 319
BsiSI CCGG 1 cut(s) 654
BslI CCNNNNNNNGG 3 cut(s) 140, 190, 792
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 3 cut(s) 195, 299, 319
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 8, 349, 569, 788
BspACI CCGC 6 cut(s) 33, 141, 153, 279, 496, 634
BspANI GGCC 3 cut(s) 195, 299, 319
BspCNI CTCAG 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 194, 730
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 27, 708
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 177, 708
BssMI GATC 4 cut(s) 8, 349, 569, 788
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 733
Bst6I CTCTTC 2 cut(s) 345, 681
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 2 cut(s) 188, 289
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 4 cut(s) 11, 352, 572, 791
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 8, 349, 569, 788
BstMWI GCNNNNNNNGC 5 cut(s) 150, 422, 689, 698, 776
BstNI CCWGG 1 cut(s) 733
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 731
BstSFI CTRYAG 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 123, 434
BstX2I RGATCY 1 cut(s) 569
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 3 cut(s) 195, 299, 319
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 631
Cfr13I GGNCC 4 cut(s) 181, 193, 317, 729
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 4, 620
CviAII CATG 2 cut(s) 361, 390
CviQI GTAC 2 cut(s) 4, 620
DdeI CTNAG 2 cut(s) 188, 289
DpnI GATC 4 cut(s) 10, 351, 571, 790
DpnII GATC 4 cut(s) 8, 349, 569, 788
Eam1104I CTCTTC 2 cut(s) 345, 681
EarI CTCTTC 2 cut(s) 345, 681
EciI GGCGGA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 181, 729
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 2 cut(s) 364, 393
FaiI YATR 9 cut(s) 147, 362, 375, 391, 438, 450, 624, 664, 738
FatI CATG 2 cut(s) 360, 389
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 2 cut(s) 51, 550
Fnu4HI GCNGC 5 cut(s) 112, 142, 154, 423, 634
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 112, 142, 154, 423, 634
FspBI CTAG 1 cut(s) 771
GluI GCNGC 5 cut(s) 112, 142, 154, 423, 634
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 3 cut(s) 195, 299, 319
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 364, 393
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 86, 782
HpaII CCGG 1 cut(s) 654
Hpy166II GTNNAC 3 cut(s) 52, 271, 551
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 12, 291, 786
Hpy8I GTNNAC 3 cut(s) 52, 271, 551
HpyAV CCTTC 2 cut(s) 206, 434
HpyCH4IV ACGT 2 cut(s) 48, 666
HpyCH4V TGCA 6 cut(s) 119, 210, 325, 393, 422, 683
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 422, 689, 698, 776
HpyF3I CTNAG 2 cut(s) 188, 289
HpySE526I ACGT 2 cut(s) 48, 666
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 364, 393
Kzo9I GATC 4 cut(s) 8, 349, 569, 788
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 2 cut(s) 123, 434
MaeI CTAG 1 cut(s) 771
MaeII ACGT 2 cut(s) 48, 666
MalI GATC 4 cut(s) 10, 351, 571, 790
MboI GATC 4 cut(s) 8, 349, 569, 788
MboII GAAGA 4 cut(s) 217, 332, 623, 698
MflI RGATCY 1 cut(s) 569
MluCI AATT 1 cut(s) 576
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 1 cut(s) 733
MvaI CCWGG 1 cut(s) 733
MwoI GCNNNNNNNGC 5 cut(s) 150, 422, 689, 698, 776
NdeII GATC 4 cut(s) 8, 349, 569, 788
NlaIII CATG 2 cut(s) 364, 393
NlaIV GGNNCC 2 cut(s) 194, 730
NspI RCATGY 1 cut(s) 393
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 86, 782
PkrI GCNGC 5 cut(s) 113, 143, 155, 424, 635
Ppu21I YACGTR 1 cut(s) 667
Psp6I CCWGG 1 cut(s) 731
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 731
PspN4I GGNNCC 2 cut(s) 194, 730
PspPI GGNCC 4 cut(s) 181, 193, 317, 729
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 569
RsaI GTAC 2 cut(s) 5, 621
RsaNI GTAC 2 cut(s) 4, 620
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 5 cut(s) 112, 142, 154, 423, 634
Sau3AI GATC 4 cut(s) 8, 349, 569, 788
Sau96I GGNCC 4 cut(s) 181, 193, 317, 729
ScrFI CCNGG 1 cut(s) 733
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 181, 729
Sse9I AATT 1 cut(s) 576
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 6 cut(s) 33, 141, 153, 279, 496, 634
SspMI CTAG 1 cut(s) 771
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 731
StyI CCWWGG 1 cut(s) 708
TaiI ACGT 2 cut(s) 51, 669
TasI AATT 1 cut(s) 576
TatI WGTACW 1 cut(s) 619
TauI GCSGC 3 cut(s) 144, 156, 636
TfiI GAWTC 2 cut(s) 86, 782
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 111, 422
TspDTI ATGAA 2 cut(s) 453, 780
TspGWI ACGGA 3 cut(s) 21, 173, 227
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 181, 729
XceI RCATGY 1 cut(s) 393
XmiI GTMKAC 2 cut(s) 51, 550
XspI CTAG 1 cut(s) 771
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.