Rh2CG117100

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016692
Physical Location & Seq
Forward (+)
10303475 .. 10305198
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG117100.1

Sequence Viewer

Length: 804 bp
ATGTACGGATCAAGAGGGGCAATGTTGGGAGGCGGGGGGTTATCGGACGTCTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTTGGCAGCAGTGCAAGGGGCTTTCAACCTTTCAGCGGCTATGGTGGCGGCTTCCAGCTTCCTGCTTTTCCCGTGGTCCGTCTCAGGGGGCTTCCTTTCAACTGCACAGACATTGACATCTTCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGCTGGTCAACAAGGGTGGACGCTTCTCAGGAGAGGCCTTTGTTGTCTTTGCTGGACCTTTGCAGGTTGAGTTAGCTCTTCAAAGAGATCGGCAGAACATGGGGCGTAGGTATGTTGAAGTTTTCACATGCAAGAGGCAGGACTATTACAATGCTGTTGCAGCAGAGGTCAGCTATGAAGGGATTTATGACAATGATTTTCAAGGAAGTCCTCCTCCAGCTAAATCATCATCAAAGCGGTTCAATGATAAGGAAAAAATGGAATACACTGAGATATTGAAGTTGCGTGGTCTACCATTCTCTGTAAAAAGATCTCAAATTATTGATTTTTTTGGAGATTTCAAGGTCGTTGAAGATAGAGTACATATTGCTTGCCGCCCAGATGGAAAAGCTACCGGAGAGGCATACGTGGAGTTTGTTTCGGCAGAAGAGGCTAAAAAGGCAATGTCCAAGGACAAGATGATGATTGGGTCTAGGTATGTGGAGCTGTTTCCATCAACACCAGATGAAGCTCGACGGGCAGAATCCAGATCAAGGCAGTGA

Protein Analysis

267

Amino Acids

29.85

Weight (kDa)

8.83

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 182 - 248 8.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 51, 553
AciI CCGC 5 cut(s) 33, 141, 153, 499, 637
AclWI GGATC 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 5, 624
AfiI CCNNNNNNNGG 3 cut(s) 140, 190, 795
AluBI AGCT 7 cut(s) 163, 338, 435, 482, 653, 748, 773
AluI AGCT 7 cut(s) 163, 338, 435, 482, 653, 748, 773
Alw26I GTCTC 2 cut(s) 64, 191
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 111, 422
AspS9I GGNCC 2 cut(s) 181, 317
AvaII GGWCC 2 cut(s) 181, 317
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbvI GCAGC 2 cut(s) 123, 434
BccI CCATC 3 cut(s) 76, 638, 763
BcoDI GTCTC 2 cut(s) 64, 191
BfaI CTAG 1 cut(s) 735
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 572
BisI GCNGC 5 cut(s) 112, 142, 154, 423, 637
BlsI GCNGC 5 cut(s) 113, 143, 155, 424, 638
Bme18I GGWCC 2 cut(s) 181, 317
BmgT120I GGNCC 2 cut(s) 181, 317
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 670
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 177, 711
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 190, 795
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 27, 711
BseDI CCNNGG 2 cut(s) 177, 711
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 140, 190, 795
BseMI GCAATG 2 cut(s) 27, 711
BseMII CTCAG 3 cut(s) 202, 303, 522
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 2 cut(s) 123, 434
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 657
BslI CCNNNNNNNGG 3 cut(s) 140, 190, 795
BsmAI GTCTC 2 cut(s) 64, 191
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 8, 349, 572, 791
BspACI CCGC 5 cut(s) 33, 141, 153, 499, 637
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 3 cut(s) 201, 302, 523
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 27, 711
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 177, 711
BssMI GATC 4 cut(s) 8, 349, 572, 791
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 711
Bst6I CTCTTC 2 cut(s) 345, 684
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 670
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 3 cut(s) 188, 289, 531
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 4 cut(s) 11, 352, 575, 794
BstMAI GTCTC 2 cut(s) 64, 191
BstMBI GATC 4 cut(s) 8, 349, 572, 791
BstMWI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
BstNSI RCATGY 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 123, 434
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 528
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 181, 317
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 4, 623
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 2 cut(s) 361, 390
CviQI GTAC 2 cut(s) 4, 623
DdeI CTNAG 3 cut(s) 188, 289, 531
DpnI GATC 4 cut(s) 10, 351, 574, 793
DpnII GATC 4 cut(s) 8, 349, 572, 791
Eam1104I CTCTTC 2 cut(s) 345, 684
EarI CTCTTC 2 cut(s) 345, 684
Eco130I CCWWGG 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 181, 317
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 364, 393
FaiI YATR 9 cut(s) 147, 362, 375, 391, 438, 450, 627, 667, 741
FatI CATG 2 cut(s) 360, 389
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 2 cut(s) 51, 553
Fnu4HI GCNGC 5 cut(s) 112, 142, 154, 423, 637
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 112, 142, 154, 423, 637
FspBI CTAG 1 cut(s) 735
GluI GCNGC 5 cut(s) 112, 142, 154, 423, 637
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 657
HgaI GACGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 364, 393
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 86, 785
HpaII CCGG 1 cut(s) 657
Hpy166II GTNNAC 4 cut(s) 52, 271, 281, 554
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 12, 291, 789
Hpy8I GTNNAC 4 cut(s) 52, 271, 281, 554
Hpy99I CGWCG 1 cut(s) 780
HpyAV CCTTC 1 cut(s) 434
HpyCH4IV ACGT 2 cut(s) 48, 669
HpyCH4V TGCA 5 cut(s) 119, 210, 325, 393, 422
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
HpyF3I CTNAG 3 cut(s) 188, 289, 531
HpySE526I ACGT 2 cut(s) 48, 669
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 364, 393
Kzo9I GATC 4 cut(s) 8, 349, 572, 791
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 2 cut(s) 123, 434
MaeI CTAG 1 cut(s) 735
MaeII ACGT 2 cut(s) 48, 669
MalI GATC 4 cut(s) 10, 351, 574, 793
MboI GATC 4 cut(s) 8, 349, 572, 791
MboII GAAGA 4 cut(s) 217, 332, 626, 701
MflI RGATCY 1 cut(s) 572
MluCI AATT 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 1 cut(s) 657
MwoI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
NdeII GATC 4 cut(s) 8, 349, 572, 791
NlaIII CATG 2 cut(s) 364, 393
NspI RCATGY 1 cut(s) 393
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 86, 785
PkrI GCNGC 5 cut(s) 113, 143, 155, 424, 638
Ppu21I YACGTR 1 cut(s) 670
PspPI GGNCC 2 cut(s) 181, 317
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 2 cut(s) 5, 624
RsaNI GTAC 2 cut(s) 4, 623
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 5 cut(s) 112, 142, 154, 423, 637
Sau3AI GATC 4 cut(s) 8, 349, 572, 791
Sau96I GGNCC 2 cut(s) 181, 317
SinI GGWCC 2 cut(s) 181, 317
Sse9I AATT 1 cut(s) 579
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 5 cut(s) 33, 141, 153, 499, 637
SspMI CTAG 1 cut(s) 735
StuI AGGCCT 1 cut(s) 299
StyI CCWWGG 1 cut(s) 711
TaiI ACGT 2 cut(s) 51, 672
TaqI TCGA 1 cut(s) 775
TasI AATT 1 cut(s) 579
TatI WGTACW 1 cut(s) 622
TauI GCSGC 3 cut(s) 144, 156, 639
TfiI GAWTC 2 cut(s) 86, 785
TscAI CASTG 2 cut(s) 121, 535
TseI GCWGC 2 cut(s) 111, 422
TspDTI ATGAA 2 cut(s) 453, 783
TspGWI ACGGA 2 cut(s) 21, 173
TspRI CASTG 2 cut(s) 121, 535
VpaK11BI GGWCC 2 cut(s) 181, 317
XceI RCATGY 1 cut(s) 393
XmiI GTMKAC 2 cut(s) 51, 553
XspI CTAG 1 cut(s) 735
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.